dbgenes

README

Module name: analysis-dbgenes

Generates a txt file of official genes used for SAINT

parameters	definition	default
uniprotdb	Uniprot Swiss-Prot database
outFile	output list of gene names	db-genes.txt

Example file formats

Download Uniprot file from: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2018_03/knowledgebase/uniprot_sprot-only2018_03.tar.gz

Unzip folder and use .dat file.

Output

• txt files with one gene names per line

Documentation

Overview

Package dbgenes generates a list of genes in sequence database

Index

• func List(fileOptions map[string]interface{})

Functions

func List

func List(fileOptions map[string]interface{})

List reads FASTA database and outputs gene names.