Directories
¶
| Path | Synopsis |
|---|---|
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Package cluster clusters a matrix
|
Package cluster clusters a matrix |
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Package function returns functions defined from input arguments
|
Package function returns functions defined from input arguments |
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image
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file
Package file has methods for opening and writing to a file for creating images
|
Package file has methods for opening and writing to a file for creating images |
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svg/heatmap
Package heatmap creates svg files for various image types.
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Package heatmap creates svg files for various image types. |
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Package localization contains functions for assessing localizations
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Package localization contains functions for assessing localizations |
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Package nmf implements common functions for NMF analysis.
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Package nmf implements common functions for NMF analysis. |
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read
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bioplex
Package bioplex reads a Bioplex interaction file
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Package bioplex reads a Bioplex interaction file |
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csv
Package csv reads a csv file
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Package csv reads a csv file |
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database
Package database reads a fasta database to an array.
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Package database reads a fasta database to an array. |
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geneontology
Package geneontology contains functions for reading and parsing Gene Ontology (GO) files.
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Package geneontology contains functions for reading and parsing Gene Ontology (GO) files. |
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interactions
Package interactions reads interactions from BioGRID and/or Intact
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Package interactions reads interactions from BioGRID and/or Intact |
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matrix
Package matrix reads matrix from txt file.
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Package matrix reads matrix from txt file. |
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nmf
Package nmf reads NMF output files and assesses localizations
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Package nmf reads NMF output files and assesses localizations |
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pfam
Package pfam reads domain and motif information from a file.
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Package pfam reads domain and motif information from a file. |
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safe
Package safe read SAFE output files
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Package safe read SAFE output files |
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saint
Package saint reads and parses SAINT-related files.
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Package saint reads and parses SAINT-related files. |
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tsne
Package tsne reads t-SNE coordinate file.
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Package tsne reads t-SNE coordinate file. |
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uniprot
Package uniprot reads a uniprot database.
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Package uniprot reads a uniprot database. |
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