align

Documentation

Index

• func AffineGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, ...) (int64, []cigar)
• func AffineGapChunk(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, ...) (int64, []cigar)
• func AllSeqAffine(records []fasta.Fasta) []fasta.Fasta
• func AllSeqAffineChunk(records []fasta.Fasta, chunkSize int) []fasta.Fasta
• func ConstGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapPen int64) (int64, []cigar)
• func DrawAlignedChunks(aln []fasta.Fasta, chunkSize int, chunkPixelWidth int, chunkPixelHeight int, ...) (*image.RGBA, error)
• func View(alpha []dna.Base, beta []dna.Base, operations []cigar) string

Functions

func AffineGap

func AffineGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, gapExtend int64) (int64, []cigar)

func AffineGapChunk

func AffineGapChunk(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, gapExtend int64, chunkSize int64) (int64, []cigar)

func AllSeqAffine

func AllSeqAffine(records []fasta.Fasta) []fasta.Fasta

func AllSeqAffineChunk

func AllSeqAffineChunk(records []fasta.Fasta, chunkSize int) []fasta.Fasta

func ConstGap

func ConstGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapPen int64) (int64, []cigar)

func DrawAlignedChunks

func DrawAlignedChunks(aln []fasta.Fasta, chunkSize int, chunkPixelWidth int, chunkPixelHeight int, border int, seqPixelSpacing int) (*image.RGBA, error)

func View

func View(alpha []dna.Base, beta []dna.Base, operations []cigar) string