fasta

Documentation

Index

• func AllAreEqual(alpha []Fasta, beta []Fasta) bool
• func AllAreEqualIgnoreOrder(alpha []Fasta, beta []Fasta) bool
• func AppendToName(record *Fasta, addition string)
• func AppendToNameAll(records []Fasta, addition string)
• func ReverseComplement(record *Fasta)
• func ReverseComplementAll(records []Fasta)
• func SortByName(seqs []Fasta)
• func SortBySeq(seqs []Fasta)
• func Write(filename string, records []Fasta) error
• func WriteGroups(filename string, groups [][]Fasta) error
• func WriteToFileHandle(file *os.File, records []Fasta, lineLength int) error
• type Fasta
  • func Read(filename string) ([]Fasta, error)

Functions

func AllAreEqual

func AllAreEqual(alpha []Fasta, beta []Fasta) bool

func AllAreEqualIgnoreOrder

func AllAreEqualIgnoreOrder(alpha []Fasta, beta []Fasta) bool

func AppendToName

func AppendToName(record *Fasta, addition string)

func AppendToNameAll

func AppendToNameAll(records []Fasta, addition string)

func ReverseComplement

func ReverseComplement(record *Fasta)

func ReverseComplementAll

func ReverseComplementAll(records []Fasta)

func SortByName

func SortByName(seqs []Fasta)

func SortBySeq

func SortBySeq(seqs []Fasta)

func Write

func Write(filename string, records []Fasta) error

func WriteGroups

func WriteGroups(filename string, groups [][]Fasta) error

func WriteToFileHandle

func WriteToFileHandle(file *os.File, records []Fasta, lineLength int) error

Types

type Fasta

type Fasta struct {
	Name string
	Seq  []dna.Base
}

func Read

func Read(filename string) ([]Fasta, error)