cmd

Documentation

Overview

Package cmd is built to run the cobra CLI.

Index

• func CleanRunner() error
• func ConvertFileData(newFileType string) error
• func Execute()
• func ExtractRunner(cmd *cobra.Command, fName string, strictStatus bool)
• func ExtractServerRunner(fName string, idCol string, targetCol string, strictStatus bool) error
• func FindColIndex(headers []string, colName string) (int, error)
• func ReadCsvFile(filePath string) ([]string, [][]string)

Functions

func CleanRunner

func CleanRunner() error

CleanRunner executes on the 'clean' command, it removes all the files specified.

func ConvertFileData

func ConvertFileData(newFileType string) error

ConvertFileData converts the ".jsonl" output to either ".json" or ".csv" output.

func Execute

func Execute()

Execute adds all child commands to the root command and sets flags appropriately. This is called by main.main(). It only needs to happen once to the rootCmd.

func ExtractRunner

func ExtractRunner(cmd *cobra.Command, fName string, strictStatus bool)

ExtractRunner executes on the `extract` command. This function reads the specified csv file, and checks the target-column for Drug instances using ScanDrugs.

func ExtractServerRunner

func ExtractServerRunner(fName string, idCol string, targetCol string, strictStatus bool) error

ExtractServerRunner runs the extract command in server mode.

func FindColIndex

func FindColIndex(headers []string, colName string) (int, error)

FindColIndex finds the index of the targeted column amongst the headers. Returns the integer index of the column.

func ReadCsvFile

func ReadCsvFile(filePath string) ([]string, [][]string)

ReadCsvFile reads the user-provided csv input file. Returns the headers of the file and the data contained in the file.