genomics

package
v0.78.0 Latest Latest
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 Go to latest Published: May 3, 2022 License: BSD-3-Clause Imports: 16 Imported by: 1

Documentation

Overview

Package genomics provides access to the Genomics API.

For product documentation, see: https://cloud.google.com/genomics

Creating a client

Usage example: 

import "google.golang.org/api/genomics/v2alpha1"
...
ctx := context.Background()
genomicsService, err := genomics.NewService(ctx)

In this example, Google Application Default Credentials are used for authentication.

For information on how to create and obtain Application Default Credentials, see https://developers.google.com/identity/protocols/application-default-credentials.

Other authentication options

By default, all available scopes (see "Constants") are used to authenticate. To restrict scopes, use option.WithScopes: 

genomicsService, err := genomics.NewService(ctx, option.WithScopes(genomics.GenomicsScope))

To use an API key for authentication (note: some APIs do not support API keys), use option.WithAPIKey: 

genomicsService, err := genomics.NewService(ctx, option.WithAPIKey("AIza..."))

To use an OAuth token (e.g., a user token obtained via a three-legged OAuth flow), use option.WithTokenSource: 

config := &oauth2.Config{...}
// ...
token, err := config.Exchange(ctx, ...)
genomicsService, err := genomics.NewService(ctx, option.WithTokenSource(config.TokenSource(ctx, token)))

See https://godoc.org/google.golang.org/api/option/ for details on options.

Index

Constants

View Source 
const (
	// See, edit, configure, and delete your Google Cloud data and see the
	// email address for your Google Account.
	CloudPlatformScope = "https://www.googleapis.com/auth/cloud-platform"

	// View and manage Genomics data
	GenomicsScope = "https://www.googleapis.com/auth/genomics"
)

OAuth2 scopes used by this API.

Variables

This section is empty.

Functions

This section is empty.

Types

type Accelerator 

type Accelerator struct {
	// Count: How many accelerators of this type to attach.
	Count int64 `json:"count,omitempty,string"`

	// Type: The accelerator type string (for example, "nvidia-tesla-k80").
	// Only NVIDIA GPU accelerators are currently supported. If an NVIDIA
	// GPU is attached, the required runtime libraries will be made
	// available to all containers under `/usr/local/nvidia`. The driver
	// version to install must be specified using the NVIDIA driver version
	// parameter on the virtual machine specification. Note that attaching a
	// GPU increases the worker VM startup time by a few minutes.
	Type string `json:"type,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Count") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Count") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Accelerator: Carries information about an accelerator that can be attached to a VM.

func (*Accelerator) MarshalJSON 

func (s *Accelerator) MarshalJSON() ([]byte, error)

type Action 

type Action struct {
	// Commands: If specified, overrides the `CMD` specified in the
	// container. If the container also has an `ENTRYPOINT` the values are
	// used as entrypoint arguments. Otherwise, they are used as a command
	// and arguments to run inside the container.
	Commands []string `json:"commands,omitempty"`

	// Credentials: If the specified image is hosted on a private registry
	// other than Google Container Registry, the credentials required to
	// pull the image must be specified here as an encrypted secret. The
	// secret must decrypt to a JSON-encoded dictionary containing both
	// `username` and `password` keys.
	Credentials *Secret `json:"credentials,omitempty"`

	// EncryptedEnvironment: The encrypted environment to pass into the
	// container. This environment is merged with values specified in the
	// google.genomics.v2alpha1.Pipeline message, overwriting any duplicate
	// values. The secret must decrypt to a JSON-encoded dictionary where
	// key-value pairs serve as environment variable names and their values.
	// The decoded environment variables can overwrite the values specified
	// by the `environment` field.
	EncryptedEnvironment *Secret `json:"encryptedEnvironment,omitempty"`

	// Entrypoint: If specified, overrides the `ENTRYPOINT` specified in the
	// container.
	Entrypoint string `json:"entrypoint,omitempty"`

	// Environment: The environment to pass into the container. This
	// environment is merged with values specified in the
	// google.genomics.v2alpha1.Pipeline message, overwriting any duplicate
	// values. In addition to the values passed here, a few other values are
	// automatically injected into the environment. These cannot be hidden
	// or overwritten. `GOOGLE_PIPELINE_FAILED` will be set to "1" if the
	// pipeline failed because an action has exited with a non-zero status
	// (and did not have the `IGNORE_EXIT_STATUS` flag set). This can be
	// used to determine if additional debug or logging actions should
	// execute. `GOOGLE_LAST_EXIT_STATUS` will be set to the exit status of
	// the last non-background action that executed. This can be used by
	// workflow engine authors to determine whether an individual action has
	// succeeded or failed.
	Environment map[string]string `json:"environment,omitempty"`

	// Flags: The set of flags to apply to this action.
	//
	// Possible values:
	//   "FLAG_UNSPECIFIED" - Unspecified flag.
	//   "IGNORE_EXIT_STATUS" - Normally, a non-zero exit status causes the
	// pipeline to fail. This flag allows execution of other actions to
	// continue instead.
	//   "RUN_IN_BACKGROUND" - This flag allows an action to continue
	// running in the background while executing subsequent actions. This is
	// useful to provide services to other actions (or to provide debugging
	// support tools like SSH servers).
	//   "ALWAYS_RUN" - By default, after an action fails, no further
	// actions are run. This flag indicates that this action must be run
	// even if the pipeline has already failed. This is useful for actions
	// that copy output files off of the VM or for debugging. Note that no
	// actions will be run if image prefetching fails.
	//   "ENABLE_FUSE" - Enable access to the FUSE device for this action.
	// Filesystems can then be mounted into disks shared with other actions.
	// The other actions do not need the `ENABLE_FUSE` flag to access the
	// mounted filesystem. This has the effect of causing the container to
	// be executed with `CAP_SYS_ADMIN` and exposes `/dev/fuse` to the
	// container, so use it only for containers you trust.
	//   "PUBLISH_EXPOSED_PORTS" - Exposes all ports specified by `EXPOSE`
	// statements in the container. To discover the host side port numbers,
	// consult the `ACTION_STARTED` event in the operation metadata.
	//   "DISABLE_IMAGE_PREFETCH" - All container images are typically
	// downloaded before any actions are executed. This helps prevent typos
	// in URIs or issues like lack of disk space from wasting large amounts
	// of compute resources. If set, this flag prevents the worker from
	// downloading the image until just before the action is executed.
	//   "DISABLE_STANDARD_ERROR_CAPTURE" - A small portion of the
	// container's standard error stream is typically captured and returned
	// inside the `ContainerStoppedEvent`. Setting this flag disables this
	// functionality.
	//   "BLOCK_EXTERNAL_NETWORK" - Prevents the container from accessing
	// the external network.
	Flags []string `json:"flags,omitempty"`

	// ImageUri: Required. The URI to pull the container image from. Note
	// that all images referenced by actions in the pipeline are pulled
	// before the first action runs. If multiple actions reference the same
	// image, it is only pulled once, ensuring that the same image is used
	// for all actions in a single pipeline. The image URI can be either a
	// complete host and image specification (e.g.,
	// quay.io/biocontainers/samtools), a library and image name (e.g.,
	// google/cloud-sdk) or a bare image name ('bash') to pull from the
	// default library. No schema is required in any of these cases. If the
	// specified image is not public, the service account specified for the
	// Virtual Machine must have access to pull the images from GCR, or
	// appropriate credentials must be specified in the
	// google.genomics.v2alpha1.Action.credentials field.
	ImageUri string `json:"imageUri,omitempty"`

	// Labels: Labels to associate with the action. This field is provided
	// to assist workflow engine authors in identifying actions (for
	// example, to indicate what sort of action they perform, such as
	// localization or debugging). They are returned in the operation
	// metadata, but are otherwise ignored.
	Labels map[string]string `json:"labels,omitempty"`

	// Mounts: A list of mounts to make available to the action. In addition
	// to the values specified here, every action has a special virtual disk
	// mounted under `/google` that contains log files and other operational
	// components. - /google/logs All logs written during the pipeline
	// execution. - /google/logs/output The combined standard output and
	// standard error of all actions run as part of the pipeline execution.
	// - /google/logs/action/*/stdout The complete contents of each
	// individual action's standard output. - /google/logs/action/*/stderr
	// The complete contents of each individual action's standard error
	// output.
	Mounts []*Mount `json:"mounts,omitempty"`

	// Name: An optional name for the container. The container hostname will
	// be set to this name, making it useful for inter-container
	// communication. The name must contain only upper and lowercase
	// alphanumeric characters and hyphens and cannot start with a hyphen.
	Name string `json:"name,omitempty"`

	// PidNamespace: An optional identifier for a PID namespace to run the
	// action inside. Multiple actions should use the same string to share a
	// namespace. If unspecified, a separate isolated namespace is used.
	PidNamespace string `json:"pidNamespace,omitempty"`

	// PortMappings: A map of containers to host port mappings for this
	// container. If the container already specifies exposed ports, use the
	// `PUBLISH_EXPOSED_PORTS` flag instead. The host port number must be
	// less than 65536. If it is zero, an unused random port is assigned. To
	// determine the resulting port number, consult the
	// `ContainerStartedEvent` in the operation metadata.
	PortMappings map[string]int64 `json:"portMappings,omitempty"`

	// Timeout: The maximum amount of time to give the action to complete.
	// If the action fails to complete before the timeout, it will be
	// terminated and the exit status will be non-zero. The pipeline will
	// continue or terminate based on the rules defined by the `ALWAYS_RUN`
	// and `IGNORE_EXIT_STATUS` flags.
	Timeout string `json:"timeout,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Commands") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Commands") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Action: Specifies a single action that runs a Docker container.

func (*Action) MarshalJSON 

func (s *Action) MarshalJSON() ([]byte, error)

type CancelOperationRequest 

type CancelOperationRequest struct {
}

CancelOperationRequest: The request message for Operations.CancelOperation.

type CheckInRequest 

type CheckInRequest struct {
	// DeadlineExpired: The deadline has expired and the worker needs more
	// time.
	DeadlineExpired *Empty `json:"deadlineExpired,omitempty"`

	// Event: A workflow specific event occurred.
	Event googleapi.RawMessage `json:"event,omitempty"`

	// Events: A list of timestamped events.
	Events []*TimestampedEvent `json:"events,omitempty"`

	// Result: The operation has finished with the given result.
	Result *Status `json:"result,omitempty"`

	// SosReport: An SOS report for an unexpected VM failure.
	SosReport string `json:"sosReport,omitempty"`

	// WorkerStatus: Data about the status of the worker VM.
	WorkerStatus *WorkerStatus `json:"workerStatus,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DeadlineExpired") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DeadlineExpired") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

CheckInRequest: The parameters to the CheckIn method.

func (*CheckInRequest) MarshalJSON 

func (s *CheckInRequest) MarshalJSON() ([]byte, error)

type CheckInResponse 

type CheckInResponse struct {
	// Deadline: The deadline by which the worker must request an extension.
	// The backend will allow for network transmission time and other
	// delays, but the worker must attempt to transmit the extension request
	// no later than the deadline.
	Deadline string `json:"deadline,omitempty"`

	// Features: Feature configuration for the operation.
	Features googleapi.RawMessage `json:"features,omitempty"`

	// Metadata: The metadata that describes the operation assigned to the
	// worker.
	Metadata googleapi.RawMessage `json:"metadata,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Deadline") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Deadline") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

CheckInResponse: The response to the CheckIn method.

func (*CheckInResponse) MarshalJSON 

func (s *CheckInResponse) MarshalJSON() ([]byte, error)

type ContainerKilledEvent 

type ContainerKilledEvent struct {
	// ActionId: The numeric ID of the action that started the container.
	ActionId int64 `json:"actionId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ActionId") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ActionId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ContainerKilledEvent: An event generated when a container is forcibly terminated by the worker. Currently, this only occurs when the container outlives the timeout specified by the user.

func (*ContainerKilledEvent) MarshalJSON 

func (s *ContainerKilledEvent) MarshalJSON() ([]byte, error)

type ContainerStartedEvent 

type ContainerStartedEvent struct {
	// ActionId: The numeric ID of the action that started this container.
	ActionId int64 `json:"actionId,omitempty"`

	// IpAddress: The public IP address that can be used to connect to the
	// container. This field is only populated when at least one port
	// mapping is present. If the instance was created with a private
	// address, this field will be empty even if port mappings exist.
	IpAddress string `json:"ipAddress,omitempty"`

	// PortMappings: The container-to-host port mappings installed for this
	// container. This set will contain any ports exposed using the
	// `PUBLISH_EXPOSED_PORTS` flag as well as any specified in the `Action`
	// definition.
	PortMappings map[string]int64 `json:"portMappings,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ActionId") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ActionId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ContainerStartedEvent: An event generated when a container starts.

func (*ContainerStartedEvent) MarshalJSON 

func (s *ContainerStartedEvent) MarshalJSON() ([]byte, error)

type ContainerStoppedEvent 

type ContainerStoppedEvent struct {
	// ActionId: The numeric ID of the action that started this container.
	ActionId int64 `json:"actionId,omitempty"`

	// ExitStatus: The exit status of the container.
	ExitStatus int64 `json:"exitStatus,omitempty"`

	// Stderr: The tail end of any content written to standard error by the
	// container. If the content emits large amounts of debugging noise or
	// contains sensitive information, you can prevent the content from
	// being printed by setting the `DISABLE_STANDARD_ERROR_CAPTURE` flag.
	// Note that only a small amount of the end of the stream is captured
	// here. The entire stream is stored in the `/google/logs` directory
	// mounted into each action, and can be copied off the machine as
	// described elsewhere.
	Stderr string `json:"stderr,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ActionId") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ActionId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ContainerStoppedEvent: An event generated when a container exits.

func (*ContainerStoppedEvent) MarshalJSON 

func (s *ContainerStoppedEvent) MarshalJSON() ([]byte, error)

type DelayedEvent 

type DelayedEvent struct {
	// Cause: A textual description of the cause of the delay. The string
	// can change without notice because it is often generated by another
	// service (such as Compute Engine).
	Cause string `json:"cause,omitempty"`

	// Metrics: If the delay was caused by a resource shortage, this field
	// lists the Compute Engine metrics that are preventing this operation
	// from running (for example, `CPUS` or `INSTANCES`). If the particular
	// metric is not known, a single `UNKNOWN` metric will be present.
	Metrics []string `json:"metrics,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Cause") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Cause") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

DelayedEvent: An event generated whenever a resource limitation or transient error delays execution of a pipeline that was otherwise ready to run.

func (*DelayedEvent) MarshalJSON 

func (s *DelayedEvent) MarshalJSON() ([]byte, error)

type Disk 

type Disk struct {
	// Name: A user-supplied name for the disk. Used when mounting the disk
	// into actions. The name must contain only upper and lowercase
	// alphanumeric characters and hyphens and cannot start with a hyphen.
	Name string `json:"name,omitempty"`

	// SizeGb: The size, in GB, of the disk to attach. If the size is not
	// specified, a default is chosen to ensure reasonable I/O performance.
	// If the disk type is specified as `local-ssd`, multiple local drives
	// are automatically combined to provide the requested size. Note,
	// however, that each physical SSD is 375GB in size, and no more than 8
	// drives can be attached to a single instance.
	SizeGb int64 `json:"sizeGb,omitempty"`

	// SourceImage: An optional image to put on the disk before attaching it
	// to the VM.
	SourceImage string `json:"sourceImage,omitempty"`

	// Type: The Compute Engine disk type. If unspecified, `pd-standard` is
	// used.
	Type string `json:"type,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Name") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Name") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Disk: Carries information about a disk that can be attached to a VM. See https://cloud.google.com/compute/docs/disks/performance for more information about disk type, size, and performance considerations. Specify either `Volume` or `Disk`, but not both.

func (*Disk) MarshalJSON 

func (s *Disk) MarshalJSON() ([]byte, error)

type DiskStatus 

type DiskStatus struct {
	// FreeSpaceBytes: Free disk space.
	FreeSpaceBytes uint64 `json:"freeSpaceBytes,omitempty,string"`

	// TotalSpaceBytes: Total disk space.
	TotalSpaceBytes uint64 `json:"totalSpaceBytes,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "FreeSpaceBytes") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "FreeSpaceBytes") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

DiskStatus: The status of a disk on a VM.

func (*DiskStatus) MarshalJSON 

func (s *DiskStatus) MarshalJSON() ([]byte, error)

type Empty 

type Empty struct {
	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`
}

Empty: A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance: service Foo { rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty); }

type Event 

type Event struct {
	// Description: A human-readable description of the event. Note that
	// these strings can change at any time without notice. Any application
	// logic must use the information in the `details` field.
	Description string `json:"description,omitempty"`

	// Details: Machine-readable details about the event.
	Details googleapi.RawMessage `json:"details,omitempty"`

	// Timestamp: The time at which the event occurred.
	Timestamp string `json:"timestamp,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Description") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Description") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Event: Carries information about events that occur during pipeline execution.

func (*Event) MarshalJSON 

func (s *Event) MarshalJSON() ([]byte, error)

type ExistingDisk added in v0.33.0 

type ExistingDisk struct {
	// Disk: If `disk` contains slashes, the Cloud Life Sciences API assumes
	// that it is a complete URL for the disk. If `disk` does not contain
	// slashes, the Cloud Life Sciences API assumes that the disk is a zonal
	// disk and a URL will be generated of the form `zones//disks/`, where
	// “ is the zone in which the instance is allocated. The disk must be
	// ext4 formatted. If all `Mount` references to this disk have the
	// `read_only` flag set to true, the disk will be attached in
	// `read-only` mode and can be shared with other instances. Otherwise,
	// the disk will be available for writing but cannot be shared.
	Disk string `json:"disk,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Disk") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Disk") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ExistingDisk: Configuration for an existing disk to be attached to the VM.

func (*ExistingDisk) MarshalJSON added in v0.33.0 

func (s *ExistingDisk) MarshalJSON() ([]byte, error)

type FailedEvent 

type FailedEvent struct {
	// Cause: The human-readable description of the cause of the failure.
	Cause string `json:"cause,omitempty"`

	// Code: The Google standard error code that best describes this
	// failure.
	//
	// Possible values:
	//   "OK" - Not an error; returned on success HTTP Mapping: 200 OK
	//   "CANCELLED" - The operation was cancelled, typically by the caller.
	// HTTP Mapping: 499 Client Closed Request
	//   "UNKNOWN" - Unknown error. For example, this error may be returned
	// when a `Status` value received from another address space belongs to
	// an error space that is not known in this address space. Also errors
	// raised by APIs that do not return enough error information may be
	// converted to this error. HTTP Mapping: 500 Internal Server Error
	//   "INVALID_ARGUMENT" - The client specified an invalid argument. Note
	// that this differs from `FAILED_PRECONDITION`. `INVALID_ARGUMENT`
	// indicates arguments that are problematic regardless of the state of
	// the system (e.g., a malformed file name). HTTP Mapping: 400 Bad
	// Request
	//   "DEADLINE_EXCEEDED" - The deadline expired before the operation
	// could complete. For operations that change the state of the system,
	// this error may be returned even if the operation has completed
	// successfully. For example, a successful response from a server could
	// have been delayed long enough for the deadline to expire. HTTP
	// Mapping: 504 Gateway Timeout
	//   "NOT_FOUND" - Some requested entity (e.g., file or directory) was
	// not found. Note to server developers: if a request is denied for an
	// entire class of users, such as gradual feature rollout or
	// undocumented allowlist, `NOT_FOUND` may be used. If a request is
	// denied for some users within a class of users, such as user-based
	// access control, `PERMISSION_DENIED` must be used. HTTP Mapping: 404
	// Not Found
	//   "ALREADY_EXISTS" - The entity that a client attempted to create
	// (e.g., file or directory) already exists. HTTP Mapping: 409 Conflict
	//   "PERMISSION_DENIED" - The caller does not have permission to
	// execute the specified operation. `PERMISSION_DENIED` must not be used
	// for rejections caused by exhausting some resource (use
	// `RESOURCE_EXHAUSTED` instead for those errors). `PERMISSION_DENIED`
	// must not be used if the caller can not be identified (use
	// `UNAUTHENTICATED` instead for those errors). This error code does not
	// imply the request is valid or the requested entity exists or
	// satisfies other pre-conditions. HTTP Mapping: 403 Forbidden
	//   "UNAUTHENTICATED" - The request does not have valid authentication
	// credentials for the operation. HTTP Mapping: 401 Unauthorized
	//   "RESOURCE_EXHAUSTED" - Some resource has been exhausted, perhaps a
	// per-user quota, or perhaps the entire file system is out of space.
	// HTTP Mapping: 429 Too Many Requests
	//   "FAILED_PRECONDITION" - The operation was rejected because the
	// system is not in a state required for the operation's execution. For
	// example, the directory to be deleted is non-empty, an rmdir operation
	// is applied to a non-directory, etc. Service implementors can use the
	// following guidelines to decide between `FAILED_PRECONDITION`,
	// `ABORTED`, and `UNAVAILABLE`: (a) Use `UNAVAILABLE` if the client can
	// retry just the failing call. (b) Use `ABORTED` if the client should
	// retry at a higher level. For example, when a client-specified
	// test-and-set fails, indicating the client should restart a
	// read-modify-write sequence. (c) Use `FAILED_PRECONDITION` if the
	// client should not retry until the system state has been explicitly
	// fixed. For example, if an "rmdir" fails because the directory is
	// non-empty, `FAILED_PRECONDITION` should be returned since the client
	// should not retry unless the files are deleted from the directory.
	// HTTP Mapping: 400 Bad Request
	//   "ABORTED" - The operation was aborted, typically due to a
	// concurrency issue such as a sequencer check failure or transaction
	// abort. See the guidelines above for deciding between
	// `FAILED_PRECONDITION`, `ABORTED`, and `UNAVAILABLE`. HTTP Mapping:
	// 409 Conflict
	//   "OUT_OF_RANGE" - The operation was attempted past the valid range.
	// E.g., seeking or reading past end-of-file. Unlike `INVALID_ARGUMENT`,
	// this error indicates a problem that may be fixed if the system state
	// changes. For example, a 32-bit file system will generate
	// `INVALID_ARGUMENT` if asked to read at an offset that is not in the
	// range [0,2^32-1], but it will generate `OUT_OF_RANGE` if asked to
	// read from an offset past the current file size. There is a fair bit
	// of overlap between `FAILED_PRECONDITION` and `OUT_OF_RANGE`. We
	// recommend using `OUT_OF_RANGE` (the more specific error) when it
	// applies so that callers who are iterating through a space can easily
	// look for an `OUT_OF_RANGE` error to detect when they are done. HTTP
	// Mapping: 400 Bad Request
	//   "UNIMPLEMENTED" - The operation is not implemented or is not
	// supported/enabled in this service. HTTP Mapping: 501 Not Implemented
	//   "INTERNAL" - Internal errors. This means that some invariants
	// expected by the underlying system have been broken. This error code
	// is reserved for serious errors. HTTP Mapping: 500 Internal Server
	// Error
	//   "UNAVAILABLE" - The service is currently unavailable. This is most
	// likely a transient condition, which can be corrected by retrying with
	// a backoff. Note that it is not always safe to retry non-idempotent
	// operations. See the guidelines above for deciding between
	// `FAILED_PRECONDITION`, `ABORTED`, and `UNAVAILABLE`. HTTP Mapping:
	// 503 Service Unavailable
	//   "DATA_LOSS" - Unrecoverable data loss or corruption. HTTP Mapping:
	// 500 Internal Server Error
	Code string `json:"code,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Cause") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Cause") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

FailedEvent: An event generated when the execution of a pipeline has failed. Note that other events can continue to occur after this event.

func (*FailedEvent) MarshalJSON 

func (s *FailedEvent) MarshalJSON() ([]byte, error)

type ListOperationsResponse 

type ListOperationsResponse struct {
	// NextPageToken: The standard List next-page token.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// Operations: A list of operations that matches the specified filter in
	// the request.
	Operations []*Operation `json:"operations,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ListOperationsResponse: The response message for Operations.ListOperations.

func (*ListOperationsResponse) MarshalJSON 

func (s *ListOperationsResponse) MarshalJSON() ([]byte, error)

type Metadata 

type Metadata struct {
	// CreateTime: The time at which the operation was created by the API.
	CreateTime string `json:"createTime,omitempty"`

	// EndTime: The time at which execution was completed and resources were
	// cleaned up.
	EndTime string `json:"endTime,omitempty"`

	// Events: The list of events that have happened so far during the
	// execution of this operation.
	Events []*Event `json:"events,omitempty"`

	// Labels: The user-defined labels associated with this operation.
	Labels map[string]string `json:"labels,omitempty"`

	// Pipeline: The pipeline this operation represents.
	Pipeline *Pipeline `json:"pipeline,omitempty"`

	// StartTime: The first time at which resources were allocated to
	// execute the pipeline.
	StartTime string `json:"startTime,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CreateTime") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CreateTime") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Metadata: Carries information about the pipeline execution that is returned in the long running operation's metadata field.

func (*Metadata) MarshalJSON 

func (s *Metadata) MarshalJSON() ([]byte, error)

type Mount 

type Mount struct {
	// Disk: The name of the disk to mount, as specified in the resources
	// section.
	Disk string `json:"disk,omitempty"`

	// Path: The path to mount the disk inside the container.
	Path string `json:"path,omitempty"`

	// ReadOnly: If true, the disk is mounted read-only inside the
	// container.
	ReadOnly bool `json:"readOnly,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Disk") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Disk") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Mount: Carries information about a particular disk mount inside a container.

func (*Mount) MarshalJSON 

func (s *Mount) MarshalJSON() ([]byte, error)

type NFSMount added in v0.35.0 

type NFSMount struct {
	// Target: A target NFS mount. The target must be specified as
	// `address:/mount".
	Target string `json:"target,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Target") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Target") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

NFSMount: Configuration for an `NFSMount` to be attached to the VM.

func (*NFSMount) MarshalJSON added in v0.35.0 

func (s *NFSMount) MarshalJSON() ([]byte, error)

type Network 

type Network struct {
	// Name: The network name to attach the VM's network interface to. The
	// value will be prefixed with `global/networks/` unless it contains a
	// `/`, in which case it is assumed to be a fully specified network
	// resource URL. If unspecified, the global default network is used.
	Name string `json:"name,omitempty"`

	// Subnetwork: If the specified network is configured for custom subnet
	// creation, the name of the subnetwork to attach the instance to must
	// be specified here. The value is prefixed with
	// `regions/*/subnetworks/` unless it contains a `/`, in which case it
	// is assumed to be a fully specified subnetwork resource URL. If the
	// `*` character appears in the value, it is replaced with the region
	// that the virtual machine has been allocated in.
	Subnetwork string `json:"subnetwork,omitempty"`

	// UsePrivateAddress: If set to true, do not attach a public IP address
	// to the VM. Note that without a public IP address, additional
	// configuration is required to allow the VM to access Google services.
	// See https://cloud.google.com/vpc/docs/configure-private-google-access
	// for more information.
	UsePrivateAddress bool `json:"usePrivateAddress,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Name") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Name") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Network: VM networking options.

func (*Network) MarshalJSON 

func (s *Network) MarshalJSON() ([]byte, error)

type Operation 

type Operation struct {
	// Done: If the value is `false`, it means the operation is still in
	// progress. If `true`, the operation is completed, and either `error`
	// or `response` is available.
	Done bool `json:"done,omitempty"`

	// Error: The error result of the operation in case of failure or
	// cancellation.
	Error *Status `json:"error,omitempty"`

	// Metadata: An OperationMetadata or Metadata object. This will always
	// be returned with the Operation.
	Metadata googleapi.RawMessage `json:"metadata,omitempty"`

	// Name: The server-assigned name, which is only unique within the same
	// service that originally returns it. For example:
	// `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
	Name string `json:"name,omitempty"`

	// Response: An Empty object.
	Response googleapi.RawMessage `json:"response,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Done") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Done") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Operation: This resource represents a long-running operation that is the result of a network API call.

func (*Operation) MarshalJSON 

func (s *Operation) MarshalJSON() ([]byte, error)

type PersistentDisk added in v0.33.0 

type PersistentDisk struct {
	// SizeGb: The size, in GB, of the disk to attach. If the size is not
	// specified, a default is chosen to ensure reasonable I/O performance.
	// If the disk type is specified as `local-ssd`, multiple local drives
	// are automatically combined to provide the requested size. Note,
	// however, that each physical SSD is 375GB in size, and no more than 8
	// drives can be attached to a single instance.
	SizeGb int64 `json:"sizeGb,omitempty"`

	// SourceImage: An image to put on the disk before attaching it to the
	// VM.
	SourceImage string `json:"sourceImage,omitempty"`

	// Type: The Compute Engine disk type. If unspecified, `pd-standard` is
	// used.
	Type string `json:"type,omitempty"`

	// ForceSendFields is a list of field names (e.g. "SizeGb") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "SizeGb") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

PersistentDisk: Configuration for a persistent disk to be attached to the VM. See https://cloud.google.com/compute/docs/disks/performance for more information about disk type, size, and performance considerations.

func (*PersistentDisk) MarshalJSON added in v0.33.0 

func (s *PersistentDisk) MarshalJSON() ([]byte, error)

type Pipeline 

type Pipeline struct {
	// Actions: The list of actions to execute, in the order they are
	// specified.
	Actions []*Action `json:"actions,omitempty"`

	// EncryptedEnvironment: The encrypted environment to pass into every
	// action. Each action can also specify its own encrypted environment.
	// The secret must decrypt to a JSON-encoded dictionary where key-value
	// pairs serve as environment variable names and their values. The
	// decoded environment variables can overwrite the values specified by
	// the `environment` field.
	EncryptedEnvironment *Secret `json:"encryptedEnvironment,omitempty"`

	// Environment: The environment to pass into every action. Each action
	// can also specify additional environment variables but cannot delete
	// an entry from this map (though they can overwrite it with a different
	// value).
	Environment map[string]string `json:"environment,omitempty"`

	// Resources: The resources required for execution.
	Resources *Resources `json:"resources,omitempty"`

	// Timeout: The maximum amount of time to give the pipeline to complete.
	// This includes the time spent waiting for a worker to be allocated. If
	// the pipeline fails to complete before the timeout, it will be
	// cancelled and the error code will be set to DEADLINE_EXCEEDED. If
	// unspecified, it will default to 7 days.
	Timeout string `json:"timeout,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Actions") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Actions") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Pipeline: Specifies a series of actions to execute, expressed as Docker containers.

func (*Pipeline) MarshalJSON 

func (s *Pipeline) MarshalJSON() ([]byte, error)

type PipelinesRunCall 

type PipelinesRunCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesRunCall) Context 

func (c *PipelinesRunCall) Context(ctx context.Context) *PipelinesRunCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesRunCall) Do 

func (c *PipelinesRunCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.pipelines.run" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesRunCall) Fields 

func (c *PipelinesRunCall) Fields(s ...googleapi.Field) *PipelinesRunCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesRunCall) Header 

func (c *PipelinesRunCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type PipelinesService 

type PipelinesService struct {
	// contains filtered or unexported fields
}

func NewPipelinesService 

func NewPipelinesService(s *Service) *PipelinesService

func (*PipelinesService) Run 

func (r *PipelinesService) Run(runpipelinerequest *RunPipelineRequest) *PipelinesRunCall

Run: Runs a pipeline. The returned Operation's metadata field will contain a google.genomics.v2alpha1.Metadata object describing the status of the pipeline execution. The [response] field will contain a google.genomics.v2alpha1.RunPipelineResponse object if the pipeline completes successfully. **Note:** Before you can use this method, the Genomics Service Agent must have access to your project. This is done automatically when the Cloud Genomics API is first enabled, but if you delete this permission, or if you enabled the Cloud Genomics API before the v2alpha1 API launch, you must disable and re-enable the API to grant the Genomics Service Agent the required permissions. Authorization requires the following Google IAM (https://cloud.google.com/iam/) permission: * `genomics.operations.create` [1]: /genomics/gsa

type ProjectsOperationsCancelCall 

type ProjectsOperationsCancelCall struct {
	// contains filtered or unexported fields
}

func (*ProjectsOperationsCancelCall) Context 

func (c *ProjectsOperationsCancelCall) Context(ctx context.Context) *ProjectsOperationsCancelCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ProjectsOperationsCancelCall) Do 

func (c *ProjectsOperationsCancelCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.projects.operations.cancel" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ProjectsOperationsCancelCall) Fields 

func (c *ProjectsOperationsCancelCall) Fields(s ...googleapi.Field) *ProjectsOperationsCancelCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ProjectsOperationsCancelCall) Header 

func (c *ProjectsOperationsCancelCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type ProjectsOperationsGetCall 

type ProjectsOperationsGetCall struct {
	// contains filtered or unexported fields
}

func (*ProjectsOperationsGetCall) Context 

func (c *ProjectsOperationsGetCall) Context(ctx context.Context) *ProjectsOperationsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ProjectsOperationsGetCall) Do 

func (c *ProjectsOperationsGetCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.projects.operations.get" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ProjectsOperationsGetCall) Fields 

func (c *ProjectsOperationsGetCall) Fields(s ...googleapi.Field) *ProjectsOperationsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ProjectsOperationsGetCall) Header 

func (c *ProjectsOperationsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ProjectsOperationsGetCall) IfNoneMatch 

func (c *ProjectsOperationsGetCall) IfNoneMatch(entityTag string) *ProjectsOperationsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type ProjectsOperationsListCall 

type ProjectsOperationsListCall struct {
	// contains filtered or unexported fields
}

func (*ProjectsOperationsListCall) Context 

func (c *ProjectsOperationsListCall) Context(ctx context.Context) *ProjectsOperationsListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ProjectsOperationsListCall) Do 

func (c *ProjectsOperationsListCall) Do(opts ...googleapi.CallOption) (*ListOperationsResponse, error)

Do executes the "genomics.projects.operations.list" call. Exactly one of *ListOperationsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListOperationsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ProjectsOperationsListCall) Fields 

func (c *ProjectsOperationsListCall) Fields(s ...googleapi.Field) *ProjectsOperationsListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ProjectsOperationsListCall) Filter 

func (c *ProjectsOperationsListCall) Filter(filter string) *ProjectsOperationsListCall

Filter sets the optional parameter "filter": A string for filtering Operations. In v2alpha1, the following filter fields are supported: * createTime: The time this job was created * events: The set of event (names) that have occurred while running the pipeline. The : operator can be used to determine if a particular event has occurred. * error: If the pipeline is running, this value is NULL. Once the pipeline finishes, the value is the standard Google error code. * labels.key or labels."key with space" where key is a label key. * done: If the pipeline is running, this value is false. Once the pipeline finishes, the value is true. Examples: * `projectId = my-project AND createTime >= 1432140000` * `projectId = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND status = RUNNING` * `projectId = my-project AND labels.color = *` * `projectId = my-project AND labels.color = red`

func (*ProjectsOperationsListCall) Header 

func (c *ProjectsOperationsListCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ProjectsOperationsListCall) IfNoneMatch 

func (c *ProjectsOperationsListCall) IfNoneMatch(entityTag string) *ProjectsOperationsListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*ProjectsOperationsListCall) PageSize 

func (c *ProjectsOperationsListCall) PageSize(pageSize int64) *ProjectsOperationsListCall

PageSize sets the optional parameter "pageSize": The maximum number of results to return. The maximum value is 256.

func (*ProjectsOperationsListCall) PageToken 

func (c *ProjectsOperationsListCall) PageToken(pageToken string) *ProjectsOperationsListCall

PageToken sets the optional parameter "pageToken": The standard list page token.

func (*ProjectsOperationsListCall) Pages 

func (c *ProjectsOperationsListCall) Pages(ctx context.Context, f func(*ListOperationsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type ProjectsOperationsService 

type ProjectsOperationsService struct {
	// contains filtered or unexported fields
}

func NewProjectsOperationsService 

func NewProjectsOperationsService(s *Service) *ProjectsOperationsService

func (*ProjectsOperationsService) Cancel 

func (r *ProjectsOperationsService) Cancel(name string, canceloperationrequest *CancelOperationRequest) *ProjectsOperationsCancelCall

Cancel: Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation. Authorization requires the following Google IAM (https://cloud.google.com/iam) permission: * `genomics.operations.cancel`

- name: The name of the operation resource to be cancelled.

func (*ProjectsOperationsService) Get 

func (r *ProjectsOperationsService) Get(name string) *ProjectsOperationsGetCall

Get: Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service. Authorization requires the following Google IAM (https://cloud.google.com/iam) permission: * `genomics.operations.get`

- name: The name of the operation resource.

func (*ProjectsOperationsService) List 

func (r *ProjectsOperationsService) List(name string) *ProjectsOperationsListCall

List: Lists operations that match the specified filter in the request. Authorization requires the following Google IAM (https://cloud.google.com/iam) permission: * `genomics.operations.list`

- name: The name of the operation's parent resource.

type ProjectsService 

type ProjectsService struct {
	Operations *ProjectsOperationsService

	Workers *ProjectsWorkersService
	// contains filtered or unexported fields
}

func NewProjectsService 

func NewProjectsService(s *Service) *ProjectsService

type ProjectsWorkersCheckInCall added in v0.23.0 

type ProjectsWorkersCheckInCall struct {
	// contains filtered or unexported fields
}

func (*ProjectsWorkersCheckInCall) Context added in v0.23.0 

func (c *ProjectsWorkersCheckInCall) Context(ctx context.Context) *ProjectsWorkersCheckInCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ProjectsWorkersCheckInCall) Do added in v0.23.0 

func (c *ProjectsWorkersCheckInCall) Do(opts ...googleapi.CallOption) (*CheckInResponse, error)

Do executes the "genomics.projects.workers.checkIn" call. Exactly one of *CheckInResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *CheckInResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ProjectsWorkersCheckInCall) Fields added in v0.23.0 

func (c *ProjectsWorkersCheckInCall) Fields(s ...googleapi.Field) *ProjectsWorkersCheckInCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ProjectsWorkersCheckInCall) Header added in v0.23.0 

func (c *ProjectsWorkersCheckInCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type ProjectsWorkersService added in v0.23.0 

type ProjectsWorkersService struct {
	// contains filtered or unexported fields
}

func NewProjectsWorkersService added in v0.23.0 

func NewProjectsWorkersService(s *Service) *ProjectsWorkersService

func (*ProjectsWorkersService) CheckIn added in v0.23.0 

func (r *ProjectsWorkersService) CheckIn(id string, checkinrequest *CheckInRequest) *ProjectsWorkersCheckInCall

CheckIn: The worker uses this method to retrieve the assigned operation and provide periodic status updates.

type PullStartedEvent 

type PullStartedEvent struct {
	// ImageUri: The URI of the image that was pulled.
	ImageUri string `json:"imageUri,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ImageUri") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ImageUri") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

PullStartedEvent: An event generated when the worker starts pulling an image.

func (*PullStartedEvent) MarshalJSON 

func (s *PullStartedEvent) MarshalJSON() ([]byte, error)

type PullStoppedEvent 

type PullStoppedEvent struct {
	// ImageUri: The URI of the image that was pulled.
	ImageUri string `json:"imageUri,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ImageUri") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ImageUri") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

PullStoppedEvent: An event generated when the worker stops pulling an image.

func (*PullStoppedEvent) MarshalJSON 

func (s *PullStoppedEvent) MarshalJSON() ([]byte, error)

type Resources 

type Resources struct {
	// ProjectId: The project ID to allocate resources in.
	ProjectId string `json:"projectId,omitempty"`

	// Regions: The list of regions allowed for VM allocation. If set, the
	// `zones` field must not be set.
	Regions []string `json:"regions,omitempty"`

	// VirtualMachine: The virtual machine specification.
	VirtualMachine *VirtualMachine `json:"virtualMachine,omitempty"`

	// Zones: The list of zones allowed for VM allocation. If set, the
	// `regions` field must not be set.
	Zones []string `json:"zones,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ProjectId") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ProjectId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Resources: The system resources for the pipeline run. At least one zone or region must be specified or the pipeline run will fail.

func (*Resources) MarshalJSON 

func (s *Resources) MarshalJSON() ([]byte, error)

type RunPipelineRequest 

type RunPipelineRequest struct {
	// Labels: User-defined labels to associate with the returned operation.
	// These labels are not propagated to any Google Cloud Platform
	// resources used by the operation, and can be modified at any time. To
	// associate labels with resources created while executing the
	// operation, see the appropriate resource message (for example,
	// `VirtualMachine`).
	Labels map[string]string `json:"labels,omitempty"`

	// Pipeline: Required. The description of the pipeline to run.
	Pipeline *Pipeline `json:"pipeline,omitempty"`

	// PubSubTopic: The name of an existing Pub/Sub topic. The server will
	// publish messages to this topic whenever the status of the operation
	// changes. The Genomics Service Agent account must have publisher
	// permissions to the specified topic or notifications will not be sent.
	PubSubTopic string `json:"pubSubTopic,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Labels") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Labels") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

RunPipelineRequest: The arguments to the `RunPipeline` method. The requesting user must have the `iam.serviceAccounts.actAs` permission for the Cloud Genomics service account or the request will fail.

func (*RunPipelineRequest) MarshalJSON 

func (s *RunPipelineRequest) MarshalJSON() ([]byte, error)

type RunPipelineResponse 

type RunPipelineResponse struct {
}

RunPipelineResponse: The response to the RunPipeline method, returned in the operation's result field on success.

type Secret 

type Secret struct {
	// CipherText: The value of the cipherText response from the `encrypt`
	// method. This field is intentionally unaudited.
	CipherText string `json:"cipherText,omitempty"`

	// KeyName: The name of the Cloud KMS key that will be used to decrypt
	// the secret value. The VM service account must have the required
	// permissions and authentication scopes to invoke the `decrypt` method
	// on the specified key.
	KeyName string `json:"keyName,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CipherText") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CipherText") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Secret: Holds encrypted information that is only decrypted and stored in RAM by the worker VM when running the pipeline.

func (*Secret) MarshalJSON 

func (s *Secret) MarshalJSON() ([]byte, error)

type Service 

type Service struct {
	BasePath  string // API endpoint base URL
	UserAgent string // optional additional User-Agent fragment

	Pipelines *PipelinesService

	Projects *ProjectsService

	Workers *WorkersService
	// contains filtered or unexported fields
}

func New deprecated 

func New(client *http.Client) (*Service, error)

New creates a new Service. It uses the provided http.Client for requests.

Deprecated: please use NewService instead. To provide a custom HTTP client, use option.WithHTTPClient. If you are using google.golang.org/api/googleapis/transport.APIKey, use option.WithAPIKey with NewService instead.

func NewService added in v0.3.0 

func NewService(ctx context.Context, opts ...option.ClientOption) (*Service, error)

NewService creates a new Service.

type ServiceAccount 

type ServiceAccount struct {
	// Email: Email address of the service account. If not specified, the
	// default Compute Engine service account for the project will be used.
	Email string `json:"email,omitempty"`

	// Scopes: List of scopes to be enabled for this service account on the
	// VM, in addition to the cloud-platform API scope that will be added by
	// default.
	Scopes []string `json:"scopes,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Email") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Email") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ServiceAccount: Carries information about a Google Cloud service account.

func (*ServiceAccount) MarshalJSON 

func (s *ServiceAccount) MarshalJSON() ([]byte, error)

type Status 

type Status struct {
	// Code: The status code, which should be an enum value of
	// google.rpc.Code.
	Code int64 `json:"code,omitempty"`

	// Details: A list of messages that carry the error details. There is a
	// common set of message types for APIs to use.
	Details []googleapi.RawMessage `json:"details,omitempty"`

	// Message: A developer-facing error message, which should be in
	// English. Any user-facing error message should be localized and sent
	// in the google.rpc.Status.details field, or localized by the client.
	Message string `json:"message,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Code") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Code") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Status: The `Status` type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by gRPC (https://github.com/grpc). Each `Status` message contains three pieces of data: error code, error message, and error details. You can find out more about this error model and how to work with it in the API Design Guide (https://cloud.google.com/apis/design/errors).

func (*Status) MarshalJSON 

func (s *Status) MarshalJSON() ([]byte, error)

type TimestampedEvent added in v0.14.0 

type TimestampedEvent struct {
	// Data: The event data.
	Data googleapi.RawMessage `json:"data,omitempty"`

	// Timestamp: The time when the event happened.
	Timestamp string `json:"timestamp,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Data") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Data") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

TimestampedEvent: An event that occured in the operation assigned to the worker and the time of occurance.

func (*TimestampedEvent) MarshalJSON added in v0.14.0 

func (s *TimestampedEvent) MarshalJSON() ([]byte, error)

type UnexpectedExitStatusEvent 

type UnexpectedExitStatusEvent struct {
	// ActionId: The numeric ID of the action that started the container.
	ActionId int64 `json:"actionId,omitempty"`

	// ExitStatus: The exit status of the container.
	ExitStatus int64 `json:"exitStatus,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ActionId") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ActionId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

UnexpectedExitStatusEvent: An event generated when the execution of a container results in a non-zero exit status that was not otherwise ignored. Execution will continue, but only actions that are flagged as `ALWAYS_RUN` will be executed. Other actions will be skipped.

func (*UnexpectedExitStatusEvent) MarshalJSON 

func (s *UnexpectedExitStatusEvent) MarshalJSON() ([]byte, error)

type VirtualMachine 

type VirtualMachine struct {
	// Accelerators: The list of accelerators to attach to the VM.
	Accelerators []*Accelerator `json:"accelerators,omitempty"`

	// BootDiskSizeGb: The size of the boot disk, in GB. The boot disk must
	// be large enough to accommodate all of the Docker images from each
	// action in the pipeline at the same time. If not specified, a small
	// but reasonable default value is used.
	BootDiskSizeGb int64 `json:"bootDiskSizeGb,omitempty"`

	// BootImage: The host operating system image to use. Currently, only
	// Container-Optimized OS images can be used. The default value is
	// `projects/cos-cloud/global/images/family/cos-stable`, which selects
	// the latest stable release of Container-Optimized OS. This option is
	// provided to allow testing against the beta release of the operating
	// system to ensure that the new version does not interact negatively
	// with production pipelines. To test a pipeline against the beta
	// release of Container-Optimized OS, use the value
	// `projects/cos-cloud/global/images/family/cos-beta`.
	BootImage string `json:"bootImage,omitempty"`

	// CpuPlatform: The CPU platform to request. An instance based on a
	// newer platform can be allocated, but never one with fewer
	// capabilities. The value of this parameter must be a valid Compute
	// Engine CPU platform name (such as "Intel Skylake"). This parameter is
	// only useful for carefully optimized work loads where the CPU platform
	// has a significant impact. For more information about the effect of
	// this parameter, see
	// https://cloud.google.com/compute/docs/instances/specify-min-cpu-platform.
	CpuPlatform string `json:"cpuPlatform,omitempty"`

	// Disks: The list of disks to create and attach to the VM. Specify
	// either the `volumes[]` field or the `disks[]` field, but not both.
	Disks []*Disk `json:"disks,omitempty"`

	// DockerCacheImages: The Compute Engine Disk Images to use as a Docker
	// cache. The disks will be mounted into the Docker folder in a way that
	// the images present in the cache will not need to be pulled. The
	// digests of the cached images must match those of the tags used or the
	// latest version will still be pulled. The root directory of the ext4
	// image must contain `image` and `overlay2` directories copied from the
	// Docker directory of a VM where the desired Docker images have already
	// been pulled. Any images pulled that are not cached will be stored on
	// the first cache disk instead of the boot disk. Only a single image is
	// supported.
	DockerCacheImages []string `json:"dockerCacheImages,omitempty"`

	// EnableStackdriverMonitoring: Whether Stackdriver monitoring should be
	// enabled on the VM.
	EnableStackdriverMonitoring bool `json:"enableStackdriverMonitoring,omitempty"`

	// Labels: Optional set of labels to apply to the VM and any attached
	// disk resources. These labels must adhere to the name and value
	// restrictions
	// (https://cloud.google.com/compute/docs/labeling-resources) on VM
	// labels imposed by Compute Engine. Labels keys with the prefix
	// 'google-' are reserved for use by Google. Labels applied at creation
	// time to the VM. Applied on a best-effort basis to attached disk
	// resources shortly after VM creation.
	Labels map[string]string `json:"labels,omitempty"`

	// MachineType: Required. The machine type of the virtual machine to
	// create. Must be the short name of a standard machine type (such as
	// "n1-standard-1") or a custom machine type (such as "custom-1-4096",
	// where "1" indicates the number of vCPUs and "4096" indicates the
	// memory in MB). See Creating an instance with a custom machine type
	// (https://cloud.google.com/compute/docs/instances/creating-instance-with-custom-machine-type#create)
	// for more specifications on creating a custom machine type.
	MachineType string `json:"machineType,omitempty"`

	// Network: The VM network configuration.
	Network *Network `json:"network,omitempty"`

	// NvidiaDriverVersion: The NVIDIA driver version to use when attaching
	// an NVIDIA GPU accelerator. The version specified here must be
	// compatible with the GPU libraries contained in the container being
	// executed, and must be one of the drivers hosted in the
	// `nvidia-drivers-us-public` bucket on Google Cloud Storage.
	NvidiaDriverVersion string `json:"nvidiaDriverVersion,omitempty"`

	// Preemptible: If true, allocate a preemptible VM.
	Preemptible bool `json:"preemptible,omitempty"`

	// Reservation: If specified, the VM will only be allocated inside the
	// matching reservation. It will fail if the VM parameters don't match
	// the reservation.
	Reservation string `json:"reservation,omitempty"`

	// ServiceAccount: The service account to install on the VM. This
	// account does not need any permissions other than those required by
	// the pipeline.
	ServiceAccount *ServiceAccount `json:"serviceAccount,omitempty"`

	// Volumes: The list of disks and other storage to create or attach to
	// the VM. Specify either the `volumes[]` field or the `disks[]` field,
	// but not both.
	Volumes []*Volume `json:"volumes,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Accelerators") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Accelerators") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

VirtualMachine: Carries information about a Compute Engine VM resource.

func (*VirtualMachine) MarshalJSON 

func (s *VirtualMachine) MarshalJSON() ([]byte, error)

type Volume added in v0.33.0 

type Volume struct {
	// ExistingDisk: Configuration for a existing disk.
	ExistingDisk *ExistingDisk `json:"existingDisk,omitempty"`

	// NfsMount: Configuration for an NFS mount.
	NfsMount *NFSMount `json:"nfsMount,omitempty"`

	// PersistentDisk: Configuration for a persistent disk.
	PersistentDisk *PersistentDisk `json:"persistentDisk,omitempty"`

	// Volume: A user-supplied name for the volume. Used when mounting the
	// volume into `Actions`. The name must contain only upper and lowercase
	// alphanumeric characters and hyphens and cannot start with a hyphen.
	Volume string `json:"volume,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ExistingDisk") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ExistingDisk") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Volume: Carries information about storage that can be attached to a VM. Specify either `Volume` or `Disk`, but not both.

func (*Volume) MarshalJSON added in v0.33.0 

func (s *Volume) MarshalJSON() ([]byte, error)

type WorkerAssignedEvent 

type WorkerAssignedEvent struct {
	// Instance: The worker's instance name.
	Instance string `json:"instance,omitempty"`

	// MachineType: The machine type that was assigned for the worker.
	MachineType string `json:"machineType,omitempty"`

	// Zone: The zone the worker is running in.
	Zone string `json:"zone,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Instance") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Instance") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

WorkerAssignedEvent: An event generated after a worker VM has been assigned to run the pipeline.

func (*WorkerAssignedEvent) MarshalJSON 

func (s *WorkerAssignedEvent) MarshalJSON() ([]byte, error)

type WorkerReleasedEvent 

type WorkerReleasedEvent struct {
	// Instance: The worker's instance name.
	Instance string `json:"instance,omitempty"`

	// Zone: The zone the worker was running in.
	Zone string `json:"zone,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Instance") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Instance") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

WorkerReleasedEvent: An event generated when the worker VM that was assigned to the pipeline has been released (deleted).

func (*WorkerReleasedEvent) MarshalJSON 

func (s *WorkerReleasedEvent) MarshalJSON() ([]byte, error)

type WorkerStatus 

type WorkerStatus struct {
	// AttachedDisks: Status of attached disks.
	AttachedDisks map[string]DiskStatus `json:"attachedDisks,omitempty"`

	// BootDisk: Status of the boot disk.
	BootDisk *DiskStatus `json:"bootDisk,omitempty"`

	// FreeRamBytes: Free RAM.
	FreeRamBytes uint64 `json:"freeRamBytes,omitempty,string"`

	// TotalRamBytes: Total RAM.
	TotalRamBytes uint64 `json:"totalRamBytes,omitempty,string"`

	// UptimeSeconds: System uptime.
	UptimeSeconds int64 `json:"uptimeSeconds,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "AttachedDisks") to
	// unconditionally include in API requests. By default, fields with
	// empty or default values are omitted from API requests. However, any
	// non-pointer, non-interface field appearing in ForceSendFields will be
	// sent to the server regardless of whether the field is empty or not.
	// This may be used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AttachedDisks") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

WorkerStatus: The status of the worker VM.

func (*WorkerStatus) MarshalJSON 

func (s *WorkerStatus) MarshalJSON() ([]byte, error)

type WorkersCheckInCall 

type WorkersCheckInCall struct {
	// contains filtered or unexported fields
}

func (*WorkersCheckInCall) Context 

func (c *WorkersCheckInCall) Context(ctx context.Context) *WorkersCheckInCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*WorkersCheckInCall) Do 

func (c *WorkersCheckInCall) Do(opts ...googleapi.CallOption) (*CheckInResponse, error)

Do executes the "genomics.workers.checkIn" call. Exactly one of *CheckInResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *CheckInResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*WorkersCheckInCall) Fields 

func (c *WorkersCheckInCall) Fields(s ...googleapi.Field) *WorkersCheckInCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*WorkersCheckInCall) Header 

func (c *WorkersCheckInCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type WorkersService 

type WorkersService struct {
	// contains filtered or unexported fields
}

func NewWorkersService 

func NewWorkersService(s *Service) *WorkersService

func (*WorkersService) CheckIn 

func (r *WorkersService) CheckIn(id string, checkinrequest *CheckInRequest) *WorkersCheckInCall

CheckIn: The worker uses this method to retrieve the assigned operation and provide periodic status updates.

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