biogo-igor

README

biogo-igor Benchmark

This directory contains a benchmark that takes pairwise alignment data as produced by PALS or krishna, and reports repeat feature family groupings in JSON format. Powered by the biogo bioinformatics library.

The benchmark is a modified form of the Igor example which may be found in the biogo examples repository and thus retains the BSD-3-clause license associated.

Documentation

Overview

igor is a tool that takes pairwise alignment data as produced by PALS or krishna and reports repeat feature family groupings in JSON format.