minimizer

Documentation

Overview

Package minimizer takes a sequence and finds the minimizers (for w consecutive k-mers) NOTE: currently it uses mapset to store the minimizers - this is unordered, which is fine for HULK but the minimizer sketch isn't that useful for anything else yet

Index

• func NewMinimizerSketch(k, w uint, seq []byte) (*minimizerSketch, error)

Functions

func NewMinimizerSketch

func NewMinimizerSketch(k, w uint, seq []byte) (*minimizerSketch, error)

NewMinimizerSketch is the constructor for a minimizerSketch