closest

Documentation

Overview

Package closest provides routines to find the closest sequences to a set of query sequences, by genetic distance

Index

• func Closest(query, target io.Reader, measure string, out io.Writer, threads int) error
• func ClosestN(catchmentSize int, maxdist float64, query, target io.Reader, measure string, ...) error

Functions

func Closest

func Closest(query, target io.Reader, measure string, out io.Writer, threads int) error

Closest finds the single closest sequence by genetic distance to a query/queries. It writes the results to stdout or to file. Ties for distance are broken by genome completeness

func ClosestN

func ClosestN(catchmentSize int, maxdist float64, query, target io.Reader, measure string, out io.Writer, table bool, threads int) error

ClosestN finds the closest sequence(s) by genetic distance to a query/queries. It writes the results to stdout or to file. Ties for distance are broken by genome completeness.