alphabet

Documentation

Overview

Package alphabet provides mappings between codons and amino acids

Index

• Variables
• func Complement(nuc string) string
• func MakeCodonDict() map[string]string
• func MakeCompArray() [256]byte
• func MakeEncodedCompArray() [256]byte
• func ReverseComplement(nuc string) string
• func Translate(nuc string, strict bool) (string, error)

Variables

var ErrorCDSNotModThree error = errors.New("Translation error: Nucleotide sequence not divisible by 3")

Functions

func Complement

func Complement(nuc string) string

func MakeCodonDict

func MakeCodonDict() map[string]string

MakeCodonDict returns a map from codon (string) to amino acid code (string)

func MakeCompArray

func MakeCompArray() [256]byte

func MakeEncodedCompArray

func MakeEncodedCompArray() [256]byte

func ReverseComplement

func ReverseComplement(nuc string) string

func Translate

func Translate(nuc string, strict bool) (string, error)

Translate a nucleotide sequence to a protein sequence Codons with ambiguous nucleotides are resolved if it can only possibly represent one amino acid