field

package
v1.0.4 Latest Latest
Warning

This package is not in the latest version of its module.

 Go to latest Published: Apr 27, 2021 License: Apache-2.0 Imports: 7 Imported by: 0

Documentation

Index

Constants

View Source 
const (
	MaxBestHitOverhang float64 = 0.5
	MinBestHitOverhang float64 = 0
)
View Source 
const (
	MaxBestHitScoreEdge float64 = 0.5
	MinBestHitScoreEdge float64 = 0
)
View Source 
const (
	MaxPercentIdentity float64 = 100
	MinPercentIdentity float64 = 0
)
View Source 
const (
	MaxQueryCoverageHSPPercent float64 = 100
	MinQueryCoverageHSPPercent float64 = 0
)
View Source 
const DefaultBlastNTaskType = BlastNTaskTypeMegablast
View Source 
const DefaultBlastPTaskType = BlastPTaskTypeBlastP
View Source 
const DefaultBlastXTaskType = BlastXTaskTypeBlastX
View Source 
const DefaultDBGenCode uint8 = 1
View Source 
const DefaultDomainInclusionEThreshold float64 = 0.05
View Source 
const DefaultExpectValue = "10"
View Source 
const DefaultFullCompBasedStats = FullCompBasedStatsScoreAdjustment
View Source 
const DefaultGapTrigger float64 = 22
View Source 
const DefaultInclusionEThreshold float64 = 0.002
View Source 
const DefaultLineLength uint16 = 60
View Source 
const DefaultMTModeValue = MTModeSplitByDBVolumes
View Source 
const DefaultNumAlignments uint32 = 250
View Source 
const DefaultNumDescriptions uint32 = 500
View Source 
const DefaultNumIterations uint32 = 1
View Source 
const DefaultOutFile = "-"
View Source 
const DefaultQueryFile = "-"
View Source 
const DefaultQueryGenCode uint8 = 1
View Source 
const DefaultShortCompBasedStats = ShortCompBasedStatsStatistics
View Source 
const DefaultStrandType = StrandTypeBoth
View Source 
const DefaultTBlastNTaskType = TBlastNTaskTBlastN
View Source 
const DefaultThreadCount uint8 = 1
View Source 
const DefaultThreadModeValue = ThreadModeDisable
View Source 
const MaxPenalty int32 = 0
View Source 
const (
	MaxSearchSpace uint8 = 127
)

Variables

This section is empty.

Functions

func DecodeJSONArchiveFile 

func DecodeJSONArchiveFile(dec *gojay.Decoder, val *ArchiveFile) error

func DecodeJSONBestHitOverhang 

func DecodeJSONBestHitOverhang(dec *gojay.Decoder, val *BestHitOverhang) error

func DecodeJSONBestHitScoreEdge 

func DecodeJSONBestHitScoreEdge(dec *gojay.Decoder, val *BestHitScoreEdge) error

func DecodeJSONBlastNTask 

func DecodeJSONBlastNTask(dec *gojay.Decoder, val *BlastNTask) error

func DecodeJSONBlastPTask 

func DecodeJSONBlastPTask(dec *gojay.Decoder, val *BlastPTask) error

func DecodeJSONBlastXTask 

func DecodeJSONBlastXTask(dec *gojay.Decoder, val *BlastXTask) error

func DecodeJSONCullingLimit 

func DecodeJSONCullingLimit(dec *gojay.Decoder, val *CullingLimit) error

func DecodeJSONDBFile 

func DecodeJSONDBFile(dec *gojay.Decoder, val *DBFile) error

func DecodeJSONDBGenCode 

func DecodeJSONDBGenCode(dec *gojay.Decoder, val *DBGenCode) error

func DecodeJSONDBHardMask 

func DecodeJSONDBHardMask(dec *gojay.Decoder, val *DBHardMask) error

func DecodeJSONDBSize 

func DecodeJSONDBSize(dec *gojay.Decoder, val *DBSize) error

func DecodeJSONDBSoftMask 

func DecodeJSONDBSoftMask(dec *gojay.Decoder, val *DBSoftMask) error

func DecodeJSONDomainInclusionEThreshold 

func DecodeJSONDomainInclusionEThreshold(dec *gojay.Decoder, val *DomainInclusionEThreshold) error

func DecodeJSONEntrezQuery 

func DecodeJSONEntrezQuery(dec *gojay.Decoder, val *EntrezQuery) error

func DecodeJSONExpectValue 

func DecodeJSONExpectValue(dec *gojay.Decoder, val *ExpectValue) error

func DecodeJSONExportSearchStrategy 

func DecodeJSONExportSearchStrategy(dec *gojay.Decoder, val *ExportSearchStrategy) error

func DecodeJSONExtensionDropoffFinalGapped 

func DecodeJSONExtensionDropoffFinalGapped(dec *gojay.Decoder, val *ExtensionDropoffFinalGapped) error

func DecodeJSONExtensionDropoffPrelimGapped 

func DecodeJSONExtensionDropoffPrelimGapped(dec *gojay.Decoder, val *ExtensionDropoffPrelimGapped) error

func DecodeJSONExtensionDropoffUngapped 

func DecodeJSONExtensionDropoffUngapped(dec *gojay.Decoder, val *ExtensionDropoffUngapped) error

func DecodeJSONFilteringDB 

func DecodeJSONFilteringDB(dec *gojay.Decoder, val *FilteringDB) error

func DecodeJSONFullCompBasedStats 

func DecodeJSONFullCompBasedStats(dec *gojay.Decoder, val *FullCompBasedStats) error

func DecodeJSONGIList 

func DecodeJSONGIList(dec *gojay.Decoder, val *GIList) error

func DecodeJSONGapExtend 

func DecodeJSONGapExtend(dec *gojay.Decoder, val *GapExtend) error

func DecodeJSONGapOpen 

func DecodeJSONGapOpen(dec *gojay.Decoder, val *GapOpen) error

func DecodeJSONGapTrigger 

func DecodeJSONGapTrigger(dec *gojay.Decoder, val *GapTrigger) error

func DecodeJSONHSPSorting 

func DecodeJSONHSPSorting(dec *gojay.Decoder, val *HSPSorting) error

func DecodeJSONHTML 

func DecodeJSONHTML(dec *gojay.Decoder, val *HTML) error

func DecodeJSONHitSorting 

func DecodeJSONHitSorting(dec *gojay.Decoder, val *HitSorting) error

func DecodeJSONIPGList 

func DecodeJSONIPGList(dec *gojay.Decoder, val *IPGList) error

func DecodeJSONIgnoreMSAMaster 

func DecodeJSONIgnoreMSAMaster(dec *gojay.Decoder, val *IgnoreMSAMaster) error

func DecodeJSONImportSearchStrategy 

func DecodeJSONImportSearchStrategy(dec *gojay.Decoder, val *ImportSearchStrategy) error

func DecodeJSONInMSAFile 

func DecodeJSONInMSAFile(dec *gojay.Decoder, val *InMSAFile) error

func DecodeJSONInPSSMFile 

func DecodeJSONInPSSMFile(dec *gojay.Decoder, val *InPSSMFile) error

func DecodeJSONInclusionEThreshold 

func DecodeJSONInclusionEThreshold(dec *gojay.Decoder, val *InclusionEThreshold) error

func DecodeJSONIndexName 

func DecodeJSONIndexName(dec *gojay.Decoder, val *IndexName) error

func DecodeJSONLineLength 

func DecodeJSONLineLength(dec *gojay.Decoder, val *LineLength) error

func DecodeJSONLongHelp 

func DecodeJSONLongHelp(dec *gojay.Decoder, val *LongHelp) error

func DecodeJSONLowercaseMasking 

func DecodeJSONLowercaseMasking(dec *gojay.Decoder, val *LowercaseMasking) error

func DecodeJSONMSAMasterIDX 

func DecodeJSONMSAMasterIDX(dec *gojay.Decoder, val *MSAMasterIDX) error

func DecodeJSONMTMode 

func DecodeJSONMTMode(dec *gojay.Decoder, val *MTMode) error

func DecodeJSONMatrix 

func DecodeJSONMatrix(dec *gojay.Decoder, val *Matrix) error

func DecodeJSONMaxHSPs 

func DecodeJSONMaxHSPs(dec *gojay.Decoder, val *MaxHSPs) error

func DecodeJSONMaxIntronLength 

func DecodeJSONMaxIntronLength(dec *gojay.Decoder, val *MaxIntronLength) error

func DecodeJSONMaxTargetSequences 

func DecodeJSONMaxTargetSequences(dec *gojay.Decoder, val *MaxTargetSequences) error

func DecodeJSONMinRawGappedScore 

func DecodeJSONMinRawGappedScore(dec *gojay.Decoder, val *MinRawGappedScore) error

func DecodeJSONNegativeGIList 

func DecodeJSONNegativeGIList(dec *gojay.Decoder, val *NegativeGIList) error

func DecodeJSONNegativeIPGList 

func DecodeJSONNegativeIPGList(dec *gojay.Decoder, val *NegativeIPGList) error

func DecodeJSONNegativeSequenceIDList 

func DecodeJSONNegativeSequenceIDList(dec *gojay.Decoder, val *NegativeSequenceIDList) error

func DecodeJSONNegativeTaxIDList 

func DecodeJSONNegativeTaxIDList(dec *gojay.Decoder, val *NegativeTaxIDList) error

func DecodeJSONNegativeTaxIDs 

func DecodeJSONNegativeTaxIDs(dec *gojay.Decoder, val *NegativeTaxIDs) error

func DecodeJSONNonGreedy 

func DecodeJSONNonGreedy(dec *gojay.Decoder, val *NonGreedy) error

func DecodeJSONNumAlignments 

func DecodeJSONNumAlignments(dec *gojay.Decoder, val *NumAlignments) error

func DecodeJSONNumDescriptions 

func DecodeJSONNumDescriptions(dec *gojay.Decoder, val *NumDescriptions) error

func DecodeJSONNumIterations 

func DecodeJSONNumIterations(dec *gojay.Decoder, val *NumIterations) error

func DecodeJSONOffDiagonalRange 

func DecodeJSONOffDiagonalRange(dec *gojay.Decoder, val *OffDiagonalRange) error

func DecodeJSONOutASCIIPSSMFile 

func DecodeJSONOutASCIIPSSMFile(dec *gojay.Decoder, val *OutASCIIPSSMFile) error

func DecodeJSONOutFile 

func DecodeJSONOutFile(dec *gojay.Decoder, val *OutFile) error

func DecodeJSONOutFormat 

func DecodeJSONOutFormat(dec *gojay.Decoder, val *Format) error

func DecodeJSONOutPSSMFile 

func DecodeJSONOutPSSMFile(dec *gojay.Decoder, val *OutPSSMFile) error

func DecodeJSONParseDefLines 

func DecodeJSONParseDefLines(dec *gojay.Decoder, val *ParseDefLines) error

func DecodeJSONPenalty 

func DecodeJSONPenalty(dec *gojay.Decoder, val *Penalty) error

func DecodeJSONPercentIdentity 

func DecodeJSONPercentIdentity(dec *gojay.Decoder, val *PercentIdentity) error

func DecodeJSONPhiPatternFile 

func DecodeJSONPhiPatternFile(dec *gojay.Decoder, val *PhiPatternFile) error

func DecodeJSONPseudocount 

func DecodeJSONPseudocount(dec *gojay.Decoder, val *Pseudocount) error

func DecodeJSONQueryCoverageHSPPercent 

func DecodeJSONQueryCoverageHSPPercent(dec *gojay.Decoder, val *QueryCoverageHSPPercent) error

func DecodeJSONQueryFile 

func DecodeJSONQueryFile(dec *gojay.Decoder, val *QueryFile) error

func DecodeJSONQueryGenCode 

func DecodeJSONQueryGenCode(dec *gojay.Decoder, val *QueryGenCode) error

func DecodeJSONQueryLocation 

func DecodeJSONQueryLocation(dec *gojay.Decoder, val *QueryLocation) error

func DecodeJSONRPSDBFile 

func DecodeJSONRPSDBFile(dec *gojay.Decoder, val *RPSDBFile) error

func DecodeJSONRemote 

func DecodeJSONRemote(dec *gojay.Decoder, val *Remote) error

func DecodeJSONRequestID 

func DecodeJSONRequestID(dec *gojay.Decoder, val *RequestID) error

func DecodeJSONReward 

func DecodeJSONReward(dec *gojay.Decoder, val *Reward) error

func DecodeJSONSaveEachPSSM 

func DecodeJSONSaveEachPSSM(dec *gojay.Decoder, val *SaveEachPSSM) error

func DecodeJSONSavePSSMAfterLastRound 

func DecodeJSONSavePSSMAfterLastRound(dec *gojay.Decoder, val *SavePSSMAfterLastRound) error

func DecodeJSONSearchSpace 

func DecodeJSONSearchSpace(dec *gojay.Decoder, val *SearchSpace) error

func DecodeJSONSequenceIDList 

func DecodeJSONSequenceIDList(dec *gojay.Decoder, val *SequenceIDList) error

func DecodeJSONShortCompBasedStats 

func DecodeJSONShortCompBasedStats(dec *gojay.Decoder, val *ShortCompBasedStats) error

func DecodeJSONShortHelp 

func DecodeJSONShortHelp(dec *gojay.Decoder, val *ShortHelp) error

func DecodeJSONShowDomainHits 

func DecodeJSONShowDomainHits(dec *gojay.Decoder, val *ShowDomainHits) error

func DecodeJSONShowGIs 

func DecodeJSONShowGIs(dec *gojay.Decoder, val *ShowGIs) error

func DecodeJSONSoftMasking 

func DecodeJSONSoftMasking(dec *gojay.Decoder, val *SoftMasking) error

func DecodeJSONStrand 

func DecodeJSONStrand(dec *gojay.Decoder, val *Strand) error

func DecodeJSONSubjectBestHit 

func DecodeJSONSubjectBestHit(dec *gojay.Decoder, val *SubjectBestHit) error

func DecodeJSONSubjectFile 

func DecodeJSONSubjectFile(dec *gojay.Decoder, val *SubjectFile) error

func DecodeJSONSubjectLocation 

func DecodeJSONSubjectLocation(dec *gojay.Decoder, val *SubjectLocation) error

func DecodeJSONSumStats 

func DecodeJSONSumStats(dec *gojay.Decoder, val *SumStats) error

func DecodeJSONTBlastNTask 

func DecodeJSONTBlastNTask(dec *gojay.Decoder, val *TBlastNTask) error

func DecodeJSONTaxIDList 

func DecodeJSONTaxIDList(dec *gojay.Decoder, val *TaxIDList) error

func DecodeJSONTaxIDs 

func DecodeJSONTaxIDs(dec *gojay.Decoder, val *TaxIDs) error

func DecodeJSONTemplateLength 

func DecodeJSONTemplateLength(dec *gojay.Decoder, val *TemplateLength) error

func DecodeJSONTemplateType 

func DecodeJSONTemplateType(dec *gojay.Decoder, val *TemplateType) error

func DecodeJSONThreadCount 

func DecodeJSONThreadCount(dec *gojay.Decoder, val *ThreadCount) error

func DecodeJSONThreadMode 

func DecodeJSONThreadMode(dec *gojay.Decoder, val *ThreadMode) error

func DecodeJSONThreshold 

func DecodeJSONThreshold(dec *gojay.Decoder, val *Threshold) error

func DecodeJSONUngappedAlignmentsOnly 

func DecodeJSONUngappedAlignmentsOnly(dec *gojay.Decoder, val *UngappedAlignmentsOnly) error

func DecodeJSONUseIndex 

func DecodeJSONUseIndex(dec *gojay.Decoder, val *UseIndex) error

func DecodeJSONUseSmithWatermanTraceback 

func DecodeJSONUseSmithWatermanTraceback(dec *gojay.Decoder, val *UseSmithWatermanTraceback) error

func DecodeJSONVersion 

func DecodeJSONVersion(dec *gojay.Decoder, val *Version) error

func DecodeJSONWindowMaskerDB 

func DecodeJSONWindowMaskerDB(dec *gojay.Decoder, val *WindowMaskerDB) error

func DecodeJSONWindowMaskerTaxID 

func DecodeJSONWindowMaskerTaxID(dec *gojay.Decoder, val *WindowMaskerTaxID) error

func DecodeJSONWindowSize 

func DecodeJSONWindowSize(dec *gojay.Decoder, val *WindowSize) error

func DecodeJSONWordSize 

func DecodeJSONWordSize(dec *gojay.Decoder, val *WordSize) error

Types

type ArchiveFile 

type ArchiveFile struct {
	// contains filtered or unexported fields
}

func NewArchiveFile 

func NewArchiveFile(val string) ArchiveFile

func NewEmptyArchiveFile 

func NewEmptyArchiveFile() ArchiveFile

func (ArchiveFile) Flag 

func (q ArchiveFile) Flag() string

func (ArchiveFile) FlagString 

func (q ArchiveFile) FlagString() string

func (ArchiveFile) Get 

func (q ArchiveFile) Get() string

func (ArchiveFile) IsDefault 

func (q ArchiveFile) IsDefault() bool

func (ArchiveFile) IsSet 

func (q ArchiveFile) IsSet() bool

func (*ArchiveFile) Set 

func (q *ArchiveFile) Set(val string)

func (*ArchiveFile) Unset 

func (q *ArchiveFile) Unset()

type BestHitOverhang 

type BestHitOverhang struct {
	// contains filtered or unexported fields
}

func NewBestHitOverhang 

func NewBestHitOverhang(val float64) BestHitOverhang

func NewEmptyBestHitOverhang 

func NewEmptyBestHitOverhang() BestHitOverhang

func (BestHitOverhang) ArgString 

func (b BestHitOverhang) ArgString() string

func (BestHitOverhang) Flag 

func (b BestHitOverhang) Flag() string

func (BestHitOverhang) FlagString 

func (b BestHitOverhang) FlagString() string

func (BestHitOverhang) Get 

func (b BestHitOverhang) Get() float64

func (BestHitOverhang) IsDefault 

func (b BestHitOverhang) IsDefault() bool

func (BestHitOverhang) IsSet 

func (b BestHitOverhang) IsSet() bool

func (*BestHitOverhang) Set 

func (b *BestHitOverhang) Set(val float64)

func (*BestHitOverhang) Unset 

func (b *BestHitOverhang) Unset()

type BestHitScoreEdge 

type BestHitScoreEdge struct {
	// contains filtered or unexported fields
}

func NewBestHitScoreEdge 

func NewBestHitScoreEdge(val float64) BestHitScoreEdge

func NewEmptyBestHitScoreEdge 

func NewEmptyBestHitScoreEdge() BestHitScoreEdge

func (BestHitScoreEdge) ArgString 

func (b BestHitScoreEdge) ArgString() string

func (BestHitScoreEdge) Flag 

func (b BestHitScoreEdge) Flag() string

func (BestHitScoreEdge) FlagString 

func (b BestHitScoreEdge) FlagString() string

func (BestHitScoreEdge) Get 

func (b BestHitScoreEdge) Get() float64

func (BestHitScoreEdge) IsDefault 

func (b BestHitScoreEdge) IsDefault() bool

func (BestHitScoreEdge) IsSet 

func (b BestHitScoreEdge) IsSet() bool

func (*BestHitScoreEdge) Set 

func (b *BestHitScoreEdge) Set(val float64)

func (*BestHitScoreEdge) Unset 

func (b *BestHitScoreEdge) Unset()

type BlastNTask 

type BlastNTask struct {
	// contains filtered or unexported fields
}

func NewBlastNTask 

func NewBlastNTask(val BlastNTaskType) BlastNTask

func NewEmptyBlastNTask 

func NewEmptyBlastNTask() BlastNTask

func (BlastNTask) Flag 

func (b BlastNTask) Flag() string

func (BlastNTask) FlagString 

func (b BlastNTask) FlagString() string

func (BlastNTask) Get 

func (b BlastNTask) Get() BlastNTaskType

func (BlastNTask) IsDefault 

func (b BlastNTask) IsDefault() bool

func (BlastNTask) IsSet 

func (b BlastNTask) IsSet() bool

func (*BlastNTask) Set 

func (b *BlastNTask) Set(val BlastNTaskType)

func (*BlastNTask) Unset 

func (b *BlastNTask) Unset()

type BlastNTaskType 

type BlastNTaskType string
const (
	BlastNTaskTypeBlastN                 BlastNTaskType = "blastn"
	BlastNTaskTypeBlastNShort            BlastNTaskType = "blastn-short"
	BlastNTaskTypeDiscontiguousMegablast BlastNTaskType = "dc-megablast"
	BlastNTaskTypeMegablast              BlastNTaskType = "megablast"
	BlastNTaskTypeRMBlastN               BlastNTaskType = "rmblastn"
)

func (BlastNTaskType) String 

func (b BlastNTaskType) String() string

type BlastPTask 

type BlastPTask struct {
	// contains filtered or unexported fields
}

func (BlastPTask) Flag 

func (b BlastPTask) Flag() string

func (BlastPTask) FlagString 

func (b BlastPTask) FlagString() string

func (BlastPTask) Get 

func (b BlastPTask) Get() BlastPTaskType

func (BlastPTask) IsDefault 

func (b BlastPTask) IsDefault() bool

func (BlastPTask) IsSet 

func (b BlastPTask) IsSet() bool

func (*BlastPTask) Set 

func (b *BlastPTask) Set(val BlastPTaskType)

func (*BlastPTask) Unset 

func (b *BlastPTask) Unset()

type BlastPTaskType 

type BlastPTaskType string
const (
	BlastPTaskTypeBlastP      BlastPTaskType = "blastp"
	BlastPTaskTypeBlastPFast  BlastPTaskType = "blastp-fast"
	BlastPTaskTypeBlastPShort BlastPTaskType = "blastp-short"
)

func (BlastPTaskType) String 

func (b BlastPTaskType) String() string

type BlastXTask 

type BlastXTask struct {
	// contains filtered or unexported fields
}

func (BlastXTask) Flag 

func (b BlastXTask) Flag() string

func (BlastXTask) FlagString 

func (b BlastXTask) FlagString() string

func (BlastXTask) Get 

func (b BlastXTask) Get() BlastXTaskType

func (BlastXTask) IsDefault 

func (b BlastXTask) IsDefault() bool

func (BlastXTask) IsSet 

func (b BlastXTask) IsSet() bool

func (*BlastXTask) Set 

func (b *BlastXTask) Set(val BlastXTaskType)

func (*BlastXTask) Unset 

func (b *BlastXTask) Unset()

type BlastXTaskType 

type BlastXTaskType string
const (
	BlastXTaskTypeBlastX     BlastXTaskType = "blastx"
	BlastXTaskTypeBlastXFast BlastXTaskType = "blastx-fast"
)

func (BlastXTaskType) String 

func (b BlastXTaskType) String() string

type CullingLimit 

type CullingLimit struct {
	// contains filtered or unexported fields
}

func NewCullingLimit 

func NewCullingLimit(val uint32) CullingLimit

func NewEmptyCullingLimit 

func NewEmptyCullingLimit() CullingLimit

func (CullingLimit) ArgString 

func (m CullingLimit) ArgString() string

func (CullingLimit) Flag 

func (m CullingLimit) Flag() string

func (CullingLimit) FlagString 

func (m CullingLimit) FlagString() string

func (CullingLimit) Get 

func (m CullingLimit) Get() uint32

func (CullingLimit) IsDefault 

func (m CullingLimit) IsDefault() bool

func (CullingLimit) IsSet 

func (m CullingLimit) IsSet() bool

func (*CullingLimit) Set 

func (m *CullingLimit) Set(val uint32)

func (*CullingLimit) Unset 

func (m *CullingLimit) Unset()

type DBFile 

type DBFile struct {
	// contains filtered or unexported fields
}

func NewDBFile 

func NewDBFile(val string) DBFile

func NewEmptyDBFile 

func NewEmptyDBFile() DBFile

func (DBFile) Flag 

func (q DBFile) Flag() string

func (DBFile) FlagString 

func (q DBFile) FlagString() string

func (DBFile) Get 

func (q DBFile) Get() string

func (DBFile) IsDefault 

func (q DBFile) IsDefault() bool

func (DBFile) IsSet 

func (q DBFile) IsSet() bool

func (*DBFile) Set 

func (q *DBFile) Set(val string)

func (*DBFile) Unset 

func (q *DBFile) Unset()

type DBGenCode 

type DBGenCode struct {
	// contains filtered or unexported fields
}

func (DBGenCode) Flag 

func (q DBGenCode) Flag() string

func (DBGenCode) FlagString 

func (q DBGenCode) FlagString() string

func (DBGenCode) Get 

func (q DBGenCode) Get() uint8

func (DBGenCode) IsDefault 

func (q DBGenCode) IsDefault() bool

func (DBGenCode) IsSet 

func (q DBGenCode) IsSet() bool

func (*DBGenCode) Set 

func (q *DBGenCode) Set(val uint8)

func (*DBGenCode) Unset 

func (q *DBGenCode) Unset()

type DBHardMask 

type DBHardMask struct {
	// contains filtered or unexported fields
}

func NewDBHardMask 

func NewDBHardMask(val string) DBHardMask

func NewEmptyDBHardMask 

func NewEmptyDBHardMask() DBHardMask

func (DBHardMask) Flag 

func (q DBHardMask) Flag() string

func (DBHardMask) FlagString 

func (q DBHardMask) FlagString() string

func (DBHardMask) Get 

func (q DBHardMask) Get() string

func (DBHardMask) IsDefault 

func (q DBHardMask) IsDefault() bool

func (DBHardMask) IsSet 

func (q DBHardMask) IsSet() bool

func (*DBHardMask) Set 

func (q *DBHardMask) Set(val string)

func (*DBHardMask) Unset 

func (q *DBHardMask) Unset()

type DBSize 

type DBSize struct {
	// contains filtered or unexported fields
}

func NewDBSize 

func NewDBSize(val int8) DBSize

func NewEmptyDBSize 

func NewEmptyDBSize() DBSize

func (DBSize) ArgString 

func (s DBSize) ArgString() string

func (DBSize) Flag 

func (s DBSize) Flag() string

func (DBSize) FlagString 

func (s DBSize) FlagString() string

func (DBSize) Get 

func (s DBSize) Get() int8

func (DBSize) IsDefault 

func (s DBSize) IsDefault() bool

func (DBSize) IsSet 

func (s DBSize) IsSet() bool

func (*DBSize) Set 

func (s *DBSize) Set(val int8)

func (*DBSize) Unset 

func (s *DBSize) Unset()

type DBSoftMask 

type DBSoftMask struct {
	// contains filtered or unexported fields
}

func NewDBSoftMask 

func NewDBSoftMask(val string) DBSoftMask

func NewEmptyDBSoftMask 

func NewEmptyDBSoftMask() DBSoftMask

func (DBSoftMask) Flag 

func (q DBSoftMask) Flag() string

func (DBSoftMask) FlagString 

func (q DBSoftMask) FlagString() string

func (DBSoftMask) Get 

func (q DBSoftMask) Get() string

func (DBSoftMask) IsDefault 

func (q DBSoftMask) IsDefault() bool

func (DBSoftMask) IsSet 

func (q DBSoftMask) IsSet() bool

func (*DBSoftMask) Set 

func (q *DBSoftMask) Set(val string)

func (*DBSoftMask) Unset 

func (q *DBSoftMask) Unset()

type DomainInclusionEThreshold 

type DomainInclusionEThreshold struct {
	// contains filtered or unexported fields
}

func NewDomainInclusionEThreshold 

func NewDomainInclusionEThreshold(val float64) DomainInclusionEThreshold

func NewEmptyDomainInclusionEThreshold 

func NewEmptyDomainInclusionEThreshold() DomainInclusionEThreshold

func (DomainInclusionEThreshold) ArgString 

func (b DomainInclusionEThreshold) ArgString() string

func (DomainInclusionEThreshold) Flag 

func (b DomainInclusionEThreshold) Flag() string

func (DomainInclusionEThreshold) FlagString 

func (b DomainInclusionEThreshold) FlagString() string

func (DomainInclusionEThreshold) Get 

func (b DomainInclusionEThreshold) Get() float64

func (DomainInclusionEThreshold) IsDefault 

func (b DomainInclusionEThreshold) IsDefault() bool

func (DomainInclusionEThreshold) IsSet 

func (b DomainInclusionEThreshold) IsSet() bool

func (*DomainInclusionEThreshold) Set 

func (b *DomainInclusionEThreshold) Set(val float64)

func (*DomainInclusionEThreshold) Unset 

func (b *DomainInclusionEThreshold) Unset()

type Dust 

type Dust interface {
	cli.Appender
	IsYes() bool
	IsNo() bool
	IsLWL() bool

	Level() int32
	Window() int32
	Linker() int32
}

func DecodeJSONDust 

func DecodeJSONDust(dec *gojay.Decoder) (Dust, error)

func NewLWLDust 

func NewLWLDust(level, window, linker int32) Dust

func NewNoDust 

func NewNoDust() Dust

func NewYesDust 

func NewYesDust() Dust

type EntrezQuery 

type EntrezQuery struct {
	// contains filtered or unexported fields
}

func NewEmptyEntrezQuery 

func NewEmptyEntrezQuery() EntrezQuery

func NewEntrezQuery 

func NewEntrezQuery(val string) EntrezQuery

func (EntrezQuery) Flag 

func (q EntrezQuery) Flag() string

func (EntrezQuery) FlagString 

func (q EntrezQuery) FlagString() string

func (EntrezQuery) Get 

func (q EntrezQuery) Get() string

func (EntrezQuery) IsDefault 

func (q EntrezQuery) IsDefault() bool

func (EntrezQuery) IsSet 

func (q EntrezQuery) IsSet() bool

func (*EntrezQuery) Set 

func (q *EntrezQuery) Set(val string)

func (*EntrezQuery) Unset 

func (q *EntrezQuery) Unset()

type ExpectValue 

type ExpectValue struct {
	// contains filtered or unexported fields
}

func NewEmptyExpectValue 

func NewEmptyExpectValue() ExpectValue

func NewExpectValue 

func NewExpectValue(val string) ExpectValue

func (ExpectValue) Flag 

func (q ExpectValue) Flag() string

func (ExpectValue) FlagString 

func (q ExpectValue) FlagString() string

func (ExpectValue) Get 

func (q ExpectValue) Get() string

func (ExpectValue) IsDefault 

func (q ExpectValue) IsDefault() bool

func (ExpectValue) IsSet 

func (q ExpectValue) IsSet() bool

func (*ExpectValue) Set 

func (q *ExpectValue) Set(val string)

func (*ExpectValue) Unset 

func (q *ExpectValue) Unset()

type ExportSearchStrategy 

type ExportSearchStrategy struct {
	// contains filtered or unexported fields
}

func NewEmptyExportSearchStrategy 

func NewEmptyExportSearchStrategy() ExportSearchStrategy

func NewExportSearchStrategy 

func NewExportSearchStrategy(val string) ExportSearchStrategy

func (ExportSearchStrategy) Flag 

func (q ExportSearchStrategy) Flag() string

func (ExportSearchStrategy) FlagString 

func (q ExportSearchStrategy) FlagString() string

func (ExportSearchStrategy) Get 

func (q ExportSearchStrategy) Get() string

func (ExportSearchStrategy) IsDefault 

func (q ExportSearchStrategy) IsDefault() bool

func (ExportSearchStrategy) IsSet 

func (q ExportSearchStrategy) IsSet() bool

func (*ExportSearchStrategy) Set 

func (q *ExportSearchStrategy) Set(val string)

func (*ExportSearchStrategy) Unset 

func (q *ExportSearchStrategy) Unset()

type ExtensionDropoffFinalGapped 

type ExtensionDropoffFinalGapped struct {
	// contains filtered or unexported fields
}

func NewEmptyExtensionDropoffFinalGapped 

func NewEmptyExtensionDropoffFinalGapped() ExtensionDropoffFinalGapped

func NewExtensionDropoffFinalGapped 

func NewExtensionDropoffFinalGapped(val float64) ExtensionDropoffFinalGapped

func (ExtensionDropoffFinalGapped) ArgString 

func (b ExtensionDropoffFinalGapped) ArgString() string

func (ExtensionDropoffFinalGapped) Flag 

func (b ExtensionDropoffFinalGapped) Flag() string

func (ExtensionDropoffFinalGapped) FlagString 

func (b ExtensionDropoffFinalGapped) FlagString() string

func (ExtensionDropoffFinalGapped) Get 

func (b ExtensionDropoffFinalGapped) Get() float64

func (ExtensionDropoffFinalGapped) IsDefault 

func (b ExtensionDropoffFinalGapped) IsDefault() bool

func (ExtensionDropoffFinalGapped) IsSet 

func (b ExtensionDropoffFinalGapped) IsSet() bool

func (*ExtensionDropoffFinalGapped) Set 

func (b *ExtensionDropoffFinalGapped) Set(val float64)

func (*ExtensionDropoffFinalGapped) Unset 

func (b *ExtensionDropoffFinalGapped) Unset()

type ExtensionDropoffPrelimGapped 

type ExtensionDropoffPrelimGapped struct {
	// contains filtered or unexported fields
}

func NewEmptyExtensionDropoffPrelimGapped 

func NewEmptyExtensionDropoffPrelimGapped() ExtensionDropoffPrelimGapped

func NewExtensionDropoffPrelimGapped 

func NewExtensionDropoffPrelimGapped(val float64) ExtensionDropoffPrelimGapped

func (ExtensionDropoffPrelimGapped) ArgString 

func (b ExtensionDropoffPrelimGapped) ArgString() string

func (ExtensionDropoffPrelimGapped) Flag 

func (b ExtensionDropoffPrelimGapped) Flag() string

func (ExtensionDropoffPrelimGapped) FlagString 

func (b ExtensionDropoffPrelimGapped) FlagString() string

func (ExtensionDropoffPrelimGapped) Get 

func (b ExtensionDropoffPrelimGapped) Get() float64

func (ExtensionDropoffPrelimGapped) IsDefault 

func (b ExtensionDropoffPrelimGapped) IsDefault() bool

func (ExtensionDropoffPrelimGapped) IsSet 

func (b ExtensionDropoffPrelimGapped) IsSet() bool

func (*ExtensionDropoffPrelimGapped) Set 

func (b *ExtensionDropoffPrelimGapped) Set(val float64)

func (*ExtensionDropoffPrelimGapped) Unset 

func (b *ExtensionDropoffPrelimGapped) Unset()

type ExtensionDropoffUngapped 

type ExtensionDropoffUngapped struct {
	// contains filtered or unexported fields
}

func NewEmptyExtensionDropoffUngapped 

func NewEmptyExtensionDropoffUngapped() ExtensionDropoffUngapped

func NewExtensionDropoffUngapped 

func NewExtensionDropoffUngapped(val float64) ExtensionDropoffUngapped

func (ExtensionDropoffUngapped) ArgString 

func (b ExtensionDropoffUngapped) ArgString() string

func (ExtensionDropoffUngapped) Flag 

func (b ExtensionDropoffUngapped) Flag() string

func (ExtensionDropoffUngapped) FlagString 

func (b ExtensionDropoffUngapped) FlagString() string

func (ExtensionDropoffUngapped) Get 

func (b ExtensionDropoffUngapped) Get() float64

func (ExtensionDropoffUngapped) IsDefault 

func (b ExtensionDropoffUngapped) IsDefault() bool

func (ExtensionDropoffUngapped) IsSet 

func (b ExtensionDropoffUngapped) IsSet() bool

func (*ExtensionDropoffUngapped) Set 

func (b *ExtensionDropoffUngapped) Set(val float64)

func (*ExtensionDropoffUngapped) Unset 

func (b *ExtensionDropoffUngapped) Unset()

type FilteringDB 

type FilteringDB struct {
	// contains filtered or unexported fields
}

func NewEmptyFilteringDB 

func NewEmptyFilteringDB() FilteringDB

func NewFilteringDB 

func NewFilteringDB(val string) FilteringDB

func (FilteringDB) Flag 

func (q FilteringDB) Flag() string

func (FilteringDB) FlagString 

func (q FilteringDB) FlagString() string

func (FilteringDB) Get 

func (q FilteringDB) Get() string

func (FilteringDB) IsDefault 

func (q FilteringDB) IsDefault() bool

func (FilteringDB) IsSet 

func (q FilteringDB) IsSet() bool

func (*FilteringDB) Set 

func (q *FilteringDB) Set(val string)

func (*FilteringDB) Unset 

func (q *FilteringDB) Unset()

type Format 

type Format struct {
	Type      FormatType
	Delimiter byte
	Fields    FormatFieldSlice
}

func (Format) ArgString 

func (f Format) ArgString() string

func (Format) Flag 

func (f Format) Flag() string

func (Format) FlagString 

func (f Format) FlagString() string

func (Format) IsDefault 

func (f Format) IsDefault() bool

func (Format) NKeys 

func (f Format) NKeys() int

func (Format) UnmarshalJSONObject 

func (f Format) UnmarshalJSONObject(dec *gojay.Decoder, key string) error

type FormatField 

type FormatField string
const (
	FormatFieldQuerySeqID                         FormatField = "qseqid"
	FormatFieldQueryGI                            FormatField = "qgi"
	FormatFieldQueryAccession                     FormatField = "qacc"
	FormatFieldQueryAccessionVersion              FormatField = "qaccver"
	FormatFieldQuerySequenceLength                FormatField = "qlen"
	FormatFieldSubjectSeqID                       FormatField = "sseqid"
	FormatFieldAllSubjectSeqIDs                   FormatField = "sallseqid"
	FormatFieldSubjectGI                          FormatField = "sgi"
	FormatFieldAllSubjectGIs                      FormatField = "sallgi"
	FormatFieldSubjectAccession                   FormatField = "sacc"
	FormatFieldSubjectAccessionVersion            FormatField = "saccver"
	FormatFieldAllSubjectAccessions               FormatField = "sallacc"
	FormatFieldSubjectSequenceLength              FormatField = "slen"
	FormatFieldStartOfAlignmentInQuery            FormatField = "qstart"
	FormatFieldEndOfAlignmentInQuery              FormatField = "qend"
	FormatFieldStartOfAlignmentInSubject          FormatField = "sstart"
	FormatFieldEndOfAlignmentInSubject            FormatField = "send"
	FormatFieldAlignedPartOfQuerySequence         FormatField = "qseq"
	FormatFieldAlignedPartOfSubjectSequence       FormatField = "sseq"
	FormatFieldExpectValue                        FormatField = "evalue"
	FormatFieldBitScore                           FormatField = "bitscore"
	FormatFieldRawScore                           FormatField = "score"
	FormatFieldAlignmentLength                    FormatField = "length"
	FormatFieldPercentageOfIdenticalMatches       FormatField = "pident"
	FormatFieldNumberOfIdenticalMatches           FormatField = "nident"
	FormatFieldNumberOfMismatches                 FormatField = "mismatch"
	FormatFieldNumberOfPositiveScoringMatches     FormatField = "positive"
	FormatFieldNumberOfGapOpenings                FormatField = "gapopen"
	FormatFieldTotalNumberOfGaps                  FormatField = "gaps"
	FormatFieldPercentageOfPositiveScoringMatches FormatField = "ppos"
	FormatFieldQueryAndSubjectFrames              FormatField = "frames"
	FormatFieldQueryFrame                         FormatField = "qframe"
	FormatFieldSubjectFrame                       FormatField = "sframe"
	FormatFieldBlastTracebackOperations           FormatField = "btop"
	FormatFieldSubjectTaxonomyID                  FormatField = "staxid"
	FormatFieldSubjectScientificName              FormatField = "ssciname"
	FormatFieldSubjectCommonName                  FormatField = "scomname"
	FormatFieldSubjectBlastName                   FormatField = "sblastname"
	FormatFieldSubjectSuperKingdom                FormatField = "sskingdom"
	FormatFieldUniqueSubjectTaxonomyIDs           FormatField = "staxids"
	FormatFieldUniqueSubjectScientificNames       FormatField = "sscinames"
	FormatFieldUniqueSubjectCommonNames           FormatField = "scomnames"
	FormatFieldUniqueSubjectBlastNames            FormatField = "sblastnames"
	FormatFieldUniqueSubjectSuperKingdoms         FormatField = "sskingdoms"
	FormatFieldSubjectTitle                       FormatField = "stitle"
	FormatFieldAllSubjectTitles                   FormatField = "salltitles"
	FormatFieldSubjectStrand                      FormatField = "sstrand"
	FormatFieldQueryCoveragePerSubject            FormatField = "qcovs"
	FormatFieldQueryCoveragePerHSP                FormatField = "qcovhsp"
	FormatFieldQueryCoveragePerUniqueSubject      FormatField = "qcovus"
	FormatFieldIncludeSequenceData                FormatField = "SQ"
	FormatFieldSubjectAsReferenceSeq              FormatField = "SR"
	FormatFieldStandardFields                     FormatField = "std"
)

func (FormatField) IsDefault 

func (f FormatField) IsDefault() bool

func (FormatField) String 

func (f FormatField) String() string

type FormatFieldSlice 

type FormatFieldSlice []FormatField

func (*FormatFieldSlice) UnmarshalJSONArray 

func (f *FormatFieldSlice) UnmarshalJSONArray(dec *gojay.Decoder) error

type FormatType 

type FormatType uint8
const (
	FormatTypePairwise FormatType = iota
	FormatTypeQueryAnchoredShowingIdentities
	FormatTypeQueryAnchoredNoIdentities
	FormatTypeFlatQueryAnchoredShowingIdentities
	FormatTypeFlatQueryAnchoredNoIdentities
	FormatTypeBlastXML
	FormatTypeTabular
	FormatTypeTabularWithCommentLines
	FormatTypeSeqAlignTextASN1
	FormatTypeSeqAlignBinaryASN1
	FormatTypeCommaSeparatedValues
	FormatTypeBlastArchiveASN1
	FormatTypeSeqAlignJSON
	FormatTypeMultipleFileBlastJSON
	FormatTypeMultipleFileBlastXML2
	FormatTypeSingleFileBlastJSON
	FormatTypeSingleFileBlastXML2
	FormatTypeSequenceAlignmentMap
	FormatTypeOrganismReport
)

func (FormatType) IsDefault 

func (f FormatType) IsDefault() bool

func (FormatType) String 

func (f FormatType) String() string

type FullCompBasedStats 

type FullCompBasedStats struct {
	// contains filtered or unexported fields
}

func (FullCompBasedStats) Flag 

func (f FullCompBasedStats) Flag() string

func (FullCompBasedStats) FlagString 

func (f FullCompBasedStats) FlagString() string

func (FullCompBasedStats) Get 

func (f FullCompBasedStats) Get() FullCompBasedStatsEnum

func (FullCompBasedStats) IsDefault 

func (f FullCompBasedStats) IsDefault() bool

func (FullCompBasedStats) IsSet 

func (f FullCompBasedStats) IsSet() bool

func (*FullCompBasedStats) Set 

func (f *FullCompBasedStats) Set(val FullCompBasedStatsEnum)

func (*FullCompBasedStats) Unset 

func (f *FullCompBasedStats) Unset()

type FullCompBasedStatsEnum 

type FullCompBasedStatsEnum uint8
const (
	FullCompBasedStatsNone FullCompBasedStatsEnum = iota
	FullCompBasedStatsStatistics
	FullCompBasedStatsScoreAdjustment
	FullCompBasedStatsScoreAdjustmentUnconditional
)

func (FullCompBasedStatsEnum) String 

func (f FullCompBasedStatsEnum) String() string

type GIList 

type GIList struct {
	// contains filtered or unexported fields
}

func (GIList) Flag 

func (q GIList) Flag() string

func (GIList) FlagString 

func (q GIList) FlagString() string

func (GIList) Get 

func (q GIList) Get() string

func (GIList) IsDefault 

func (q GIList) IsDefault() bool

func (GIList) IsSet 

func (q GIList) IsSet() bool

func (*GIList) Set 

func (q *GIList) Set(val string)

func (*GIList) Unset 

func (q *GIList) Unset()

type GapExtend 

type GapExtend struct {
	// contains filtered or unexported fields
}

func NewEmptyGapExtend 

func NewEmptyGapExtend() GapExtend

func NewGapExtend 

func NewGapExtend(val int32) GapExtend

func (GapExtend) ArgString 

func (b GapExtend) ArgString() string

func (GapExtend) Flag 

func (b GapExtend) Flag() string

func (GapExtend) FlagString 

func (b GapExtend) FlagString() string

func (GapExtend) Get 

func (b GapExtend) Get() int32

func (GapExtend) IsDefault 

func (b GapExtend) IsDefault() bool

func (GapExtend) IsSet 

func (b GapExtend) IsSet() bool

func (*GapExtend) Set 

func (b *GapExtend) Set(val int32)

func (*GapExtend) Unset 

func (b *GapExtend) Unset()

type GapOpen 

type GapOpen struct {
	// contains filtered or unexported fields
}

func NewEmptyGapOpen 

func NewEmptyGapOpen() GapOpen

func NewGapOpen 

func NewGapOpen(val int32) GapOpen

func (GapOpen) ArgString 

func (b GapOpen) ArgString() string

func (GapOpen) Flag 

func (b GapOpen) Flag() string

func (GapOpen) FlagString 

func (b GapOpen) FlagString() string

func (GapOpen) Get 

func (b GapOpen) Get() int32

func (GapOpen) IsDefault 

func (b GapOpen) IsDefault() bool

func (GapOpen) IsSet 

func (b GapOpen) IsSet() bool

func (*GapOpen) Set 

func (b *GapOpen) Set(val int32)

func (*GapOpen) Unset 

func (b *GapOpen) Unset()

type GapTrigger 

type GapTrigger struct {
	// contains filtered or unexported fields
}

func NewEmptyGapTrigger 

func NewEmptyGapTrigger() GapTrigger

func NewGapTrigger 

func NewGapTrigger(val float64) GapTrigger

func (GapTrigger) ArgString 

func (b GapTrigger) ArgString() string

func (GapTrigger) Flag 

func (b GapTrigger) Flag() string

func (GapTrigger) FlagString 

func (b GapTrigger) FlagString() string

func (GapTrigger) Get 

func (b GapTrigger) Get() float64

func (GapTrigger) IsDefault 

func (b GapTrigger) IsDefault() bool

func (GapTrigger) IsSet 

func (b GapTrigger) IsSet() bool

func (*GapTrigger) Set 

func (b *GapTrigger) Set(val float64)

func (*GapTrigger) Unset 

func (b *GapTrigger) Unset()

type HSPSorting 

type HSPSorting struct {
	// contains filtered or unexported fields
}

func NewEmptyHSPSorting 

func NewEmptyHSPSorting() HSPSorting

func NewHSPSorting 

func NewHSPSorting(val HSPSortingType) HSPSorting

func (HSPSorting) Flag 

func (h HSPSorting) Flag() string

func (HSPSorting) FlagString 

func (h HSPSorting) FlagString() string

func (HSPSorting) Get 

func (h HSPSorting) Get() HSPSortingType

func (HSPSorting) IsDefault 

func (h HSPSorting) IsDefault() bool

func (HSPSorting) IsSet 

func (h HSPSorting) IsSet() bool

func (*HSPSorting) Set 

func (h *HSPSorting) Set(kind HSPSortingType)

func (*HSPSorting) Unset 

func (h *HSPSorting) Unset()

type HSPSortingType 

type HSPSortingType uint8
const (
	HSPSortingTypeByHSPExpectValue HSPSortingType = iota
	HSPSortingTypeByHSPScore
	HSPSortingTypeByHSPQueryStart
	HSPSortingTypeByHSPPercentIdentity
	HSPSortingTypeByHSPSubjectStart
)

func (HSPSortingType) String 

func (h HSPSortingType) String() string

type HTML 

type HTML struct {
	// contains filtered or unexported fields
}

func NewEmptyHTML 

func NewEmptyHTML() HTML

func NewHTML 

func NewHTML(val bool) HTML

func (HTML) Flag 

func (s HTML) Flag() string

func (HTML) FlagString 

func (s HTML) FlagString() string

func (HTML) Get 

func (s HTML) Get() bool

func (HTML) IsDefault 

func (s HTML) IsDefault() bool

func (HTML) IsSet 

func (s HTML) IsSet() bool

func (*HTML) Set 

func (s *HTML) Set(val bool)

func (*HTML) Unset 

func (s *HTML) Unset()

type HitSorting 

type HitSorting struct {
	// contains filtered or unexported fields
}

func NewEmptyHitSorting 

func NewEmptyHitSorting() HitSorting

func NewHitSorting 

func NewHitSorting(val HitSortingType) HitSorting

func (HitSorting) Flag 

func (h HitSorting) Flag() string

func (HitSorting) FlagString 

func (h HitSorting) FlagString() string

func (HitSorting) Get 

func (h HitSorting) Get() HitSortingType

func (HitSorting) IsDefault 

func (h HitSorting) IsDefault() bool

func (HitSorting) IsSet 

func (h HitSorting) IsSet() bool

func (*HitSorting) Set 

func (h *HitSorting) Set(kind HitSortingType)

func (*HitSorting) Unset 

func (h *HitSorting) Unset()

type HitSortingType 

type HitSortingType uint8
const (
	HitSortingTypeByExpectValue HitSortingType = iota
	HitSortingTypeByBitScore
	HitSortingTypeByTotalScore
	HitSortingTypeByPercentIdentity
	HitSortingTypeByQueryCoverage
)

func (HitSortingType) String 

func (h HitSortingType) String() string

type IPGList 

type IPGList struct {
	// contains filtered or unexported fields
}

func (IPGList) Flag 

func (q IPGList) Flag() string

func (IPGList) FlagString 

func (q IPGList) FlagString() string

func (IPGList) Get 

func (q IPGList) Get() string

func (IPGList) IsDefault 

func (q IPGList) IsDefault() bool

func (IPGList) IsSet 

func (q IPGList) IsSet() bool

func (*IPGList) Set 

func (q *IPGList) Set(val string)

func (*IPGList) Unset 

func (q *IPGList) Unset()

type IgnoreMSAMaster 

type IgnoreMSAMaster struct {
	// contains filtered or unexported fields
}

func NewEmptyIgnoreMSAMaster 

func NewEmptyIgnoreMSAMaster() IgnoreMSAMaster

func NewIgnoreMSAMaster 

func NewIgnoreMSAMaster(val bool) IgnoreMSAMaster

func (IgnoreMSAMaster) Flag 

func (s IgnoreMSAMaster) Flag() string

func (IgnoreMSAMaster) FlagString 

func (s IgnoreMSAMaster) FlagString() string

func (IgnoreMSAMaster) Get 

func (s IgnoreMSAMaster) Get() bool

func (IgnoreMSAMaster) IsDefault 

func (s IgnoreMSAMaster) IsDefault() bool

func (IgnoreMSAMaster) IsSet 

func (s IgnoreMSAMaster) IsSet() bool

func (*IgnoreMSAMaster) Set 

func (s *IgnoreMSAMaster) Set(val bool)

func (*IgnoreMSAMaster) Unset 

func (s *IgnoreMSAMaster) Unset()

type ImportSearchStrategy 

type ImportSearchStrategy struct {
	// contains filtered or unexported fields
}

func NewEmptyImportSearchStrategy 

func NewEmptyImportSearchStrategy() ImportSearchStrategy

func NewImportSearchStrategy 

func NewImportSearchStrategy(val string) ImportSearchStrategy

func (ImportSearchStrategy) Flag 

func (q ImportSearchStrategy) Flag() string

func (ImportSearchStrategy) FlagString 

func (q ImportSearchStrategy) FlagString() string

func (ImportSearchStrategy) Get 

func (q ImportSearchStrategy) Get() string

func (ImportSearchStrategy) IsDefault 

func (q ImportSearchStrategy) IsDefault() bool

func (ImportSearchStrategy) IsSet 

func (q ImportSearchStrategy) IsSet() bool

func (*ImportSearchStrategy) Set 

func (q *ImportSearchStrategy) Set(val string)

func (*ImportSearchStrategy) Unset 

func (q *ImportSearchStrategy) Unset()

type InMSAFile 

type InMSAFile struct {
	// contains filtered or unexported fields
}

func NewEmptyInMSAFile 

func NewEmptyInMSAFile() InMSAFile

func NewInMSAFile 

func NewInMSAFile(val string) InMSAFile

func (InMSAFile) Flag 

func (q InMSAFile) Flag() string

func (InMSAFile) FlagString 

func (q InMSAFile) FlagString() string

func (InMSAFile) Get 

func (q InMSAFile) Get() string

func (InMSAFile) IsDefault 

func (q InMSAFile) IsDefault() bool

func (InMSAFile) IsSet 

func (q InMSAFile) IsSet() bool

func (*InMSAFile) Set 

func (q *InMSAFile) Set(val string)

func (*InMSAFile) Unset 

func (q *InMSAFile) Unset()

type InPSSMFile 

type InPSSMFile struct {
	// contains filtered or unexported fields
}

func NewEmptyInPSSMFile 

func NewEmptyInPSSMFile() InPSSMFile

func NewInPSSMFile 

func NewInPSSMFile(val string) InPSSMFile

func (InPSSMFile) Flag 

func (q InPSSMFile) Flag() string

func (InPSSMFile) FlagString 

func (q InPSSMFile) FlagString() string

func (InPSSMFile) Get 

func (q InPSSMFile) Get() string

func (InPSSMFile) IsDefault 

func (q InPSSMFile) IsDefault() bool

func (InPSSMFile) IsSet 

func (q InPSSMFile) IsSet() bool

func (*InPSSMFile) Set 

func (q *InPSSMFile) Set(val string)

func (*InPSSMFile) Unset 

func (q *InPSSMFile) Unset()

type InclusionEThreshold 

type InclusionEThreshold struct {
	// contains filtered or unexported fields
}

func NewEmptyInclusionEThreshold 

func NewEmptyInclusionEThreshold() InclusionEThreshold

func NewInclusionEThreshold 

func NewInclusionEThreshold(val float64) InclusionEThreshold

func (InclusionEThreshold) ArgString 

func (b InclusionEThreshold) ArgString() string

func (InclusionEThreshold) Flag 

func (b InclusionEThreshold) Flag() string

func (InclusionEThreshold) FlagString 

func (b InclusionEThreshold) FlagString() string

func (InclusionEThreshold) Get 

func (b InclusionEThreshold) Get() float64

func (InclusionEThreshold) IsDefault 

func (b InclusionEThreshold) IsDefault() bool

func (InclusionEThreshold) IsSet 

func (b InclusionEThreshold) IsSet() bool

func (*InclusionEThreshold) Set 

func (b *InclusionEThreshold) Set(val float64)

func (*InclusionEThreshold) Unset 

func (b *InclusionEThreshold) Unset()

type IndexName 

type IndexName struct {
	// contains filtered or unexported fields
}

func NewEmptyIndexName 

func NewEmptyIndexName() IndexName

func NewIndexName 

func NewIndexName(val string) IndexName

func (IndexName) Flag 

func (q IndexName) Flag() string

func (IndexName) FlagString 

func (q IndexName) FlagString() string

func (IndexName) Get 

func (q IndexName) Get() string

func (IndexName) IsDefault 

func (q IndexName) IsDefault() bool

func (IndexName) IsSet 

func (q IndexName) IsSet() bool

func (*IndexName) Set 

func (q *IndexName) Set(val string)

func (*IndexName) Unset 

func (q *IndexName) Unset()

type LineLength 

type LineLength struct {
	// contains filtered or unexported fields
}

func NewEmptyLineLength 

func NewEmptyLineLength() LineLength

func NewLineLength 

func NewLineLength(val uint16) LineLength

func (LineLength) ArgString 

func (b LineLength) ArgString() string

func (LineLength) Flag 

func (b LineLength) Flag() string

func (LineLength) FlagString 

func (b LineLength) FlagString() string

func (LineLength) Get 

func (b LineLength) Get() uint16

func (LineLength) IsDefault 

func (b LineLength) IsDefault() bool

func (LineLength) IsSet 

func (b LineLength) IsSet() bool

func (*LineLength) Set 

func (b *LineLength) Set(val uint16)

func (*LineLength) Unset 

func (b *LineLength) Unset()

type LongHelp 

type LongHelp struct {
	// contains filtered or unexported fields
}

func NewEmptyLongHelp 

func NewEmptyLongHelp() LongHelp

func NewLongHelp 

func NewLongHelp(val bool) LongHelp

func (LongHelp) Flag 

func (s LongHelp) Flag() string

func (LongHelp) FlagString 

func (s LongHelp) FlagString() string

func (LongHelp) Get 

func (s LongHelp) Get() bool

func (LongHelp) IsDefault 

func (s LongHelp) IsDefault() bool

func (LongHelp) IsSet 

func (s LongHelp) IsSet() bool

func (*LongHelp) Set 

func (s *LongHelp) Set(val bool)

func (*LongHelp) Unset 

func (s *LongHelp) Unset()

type LowercaseMasking 

type LowercaseMasking struct {
	// contains filtered or unexported fields
}

func NewEmptyLowercaseMasking 

func NewEmptyLowercaseMasking() LowercaseMasking

func NewLowercaseMasking 

func NewLowercaseMasking(val bool) LowercaseMasking

func (LowercaseMasking) Flag 

func (s LowercaseMasking) Flag() string

func (LowercaseMasking) FlagString 

func (s LowercaseMasking) FlagString() string

func (LowercaseMasking) Get 

func (s LowercaseMasking) Get() bool

func (LowercaseMasking) IsDefault 

func (s LowercaseMasking) IsDefault() bool

func (LowercaseMasking) IsSet 

func (s LowercaseMasking) IsSet() bool

func (*LowercaseMasking) Set 

func (s *LowercaseMasking) Set(val bool)

func (*LowercaseMasking) Unset 

func (s *LowercaseMasking) Unset()

type MSAMasterIDX 

type MSAMasterIDX struct {
	// contains filtered or unexported fields
}

func NewEmptyMSAMasterIDX 

func NewEmptyMSAMasterIDX() MSAMasterIDX

func NewMSAMasterIDX 

func NewMSAMasterIDX(val uint32) MSAMasterIDX

func (MSAMasterIDX) ArgString 

func (m MSAMasterIDX) ArgString() string

func (MSAMasterIDX) Flag 

func (MSAMasterIDX) Flag() string

func (MSAMasterIDX) FlagString 

func (m MSAMasterIDX) FlagString() string

func (MSAMasterIDX) Get 

func (m MSAMasterIDX) Get() uint32

func (MSAMasterIDX) IsDefault 

func (m MSAMasterIDX) IsDefault() bool

func (MSAMasterIDX) IsSet 

func (m MSAMasterIDX) IsSet() bool

func (*MSAMasterIDX) Set 

func (m *MSAMasterIDX) Set(val uint32)

func (*MSAMasterIDX) Unset 

func (m *MSAMasterIDX) Unset()

type MTMode 

type MTMode struct {
	// contains filtered or unexported fields
}

func (MTMode) Flag 

func (m MTMode) Flag() string

func (MTMode) FlagString 

func (m MTMode) FlagString() string

func (MTMode) Get 

func (m MTMode) Get() MTModeValue

func (MTMode) IsDefault 

func (m MTMode) IsDefault() bool

func (MTMode) IsSet 

func (m MTMode) IsSet() bool

func (*MTMode) Set 

func (m *MTMode) Set(val MTModeValue)

func (*MTMode) Unset 

func (m *MTMode) Unset()

type MTModeValue 

type MTModeValue uint8
const (
	MTModeSplitByDBVolumes MTModeValue = iota
	MTModeSplitByQueries
)

func (MTModeValue) String 

func (m MTModeValue) String() string

type Matrix 

type Matrix struct {
	// contains filtered or unexported fields
}

func NewEmptyMatrix 

func NewEmptyMatrix() Matrix

func NewMatrix 

func NewMatrix(val string) Matrix

func (Matrix) Flag 

func (q Matrix) Flag() string

func (Matrix) FlagString 

func (q Matrix) FlagString() string

func (Matrix) Get 

func (q Matrix) Get() string

func (Matrix) IsDefault 

func (q Matrix) IsDefault() bool

func (Matrix) IsSet 

func (q Matrix) IsSet() bool

func (*Matrix) Set 

func (q *Matrix) Set(val string)

func (*Matrix) Unset 

func (q *Matrix) Unset()

type MaxHSPs 

type MaxHSPs struct {
	// contains filtered or unexported fields
}

func NewEmptyMaxHSPs 

func NewEmptyMaxHSPs() MaxHSPs

func NewMaxHSPs 

func NewMaxHSPs(val uint32) MaxHSPs

func (MaxHSPs) ArgString 

func (m MaxHSPs) ArgString() string

func (MaxHSPs) Flag 

func (m MaxHSPs) Flag() string

func (MaxHSPs) FlagString 

func (m MaxHSPs) FlagString() string

func (MaxHSPs) Get 

func (m MaxHSPs) Get() uint32

func (MaxHSPs) IsDefault 

func (m MaxHSPs) IsDefault() bool

func (MaxHSPs) IsSet 

func (m MaxHSPs) IsSet() bool

func (*MaxHSPs) Set 

func (m *MaxHSPs) Set(val uint32)

func (*MaxHSPs) Unset 

func (m *MaxHSPs) Unset()

type MaxIntronLength 

type MaxIntronLength struct {
	// contains filtered or unexported fields
}

func NewEmptyMaxIntronLength 

func NewEmptyMaxIntronLength() MaxIntronLength

func NewMaxIntronLength 

func NewMaxIntronLength(val uint32) MaxIntronLength

func (MaxIntronLength) ArgString 

func (b MaxIntronLength) ArgString() string

func (MaxIntronLength) Flag 

func (b MaxIntronLength) Flag() string

func (MaxIntronLength) FlagString 

func (b MaxIntronLength) FlagString() string

func (MaxIntronLength) Get 

func (b MaxIntronLength) Get() uint32

func (MaxIntronLength) IsDefault 

func (b MaxIntronLength) IsDefault() bool

func (MaxIntronLength) IsSet 

func (b MaxIntronLength) IsSet() bool

func (*MaxIntronLength) Set 

func (b *MaxIntronLength) Set(val uint32)

func (*MaxIntronLength) Unset 

func (b *MaxIntronLength) Unset()

type MaxTargetSequences 

type MaxTargetSequences struct {
	// contains filtered or unexported fields
}

func NewEmptyMaxTargetSequences 

func NewEmptyMaxTargetSequences() MaxTargetSequences

func NewMaxTargetSequences 

func NewMaxTargetSequences(val uint32) MaxTargetSequences

func (MaxTargetSequences) ArgString 

func (m MaxTargetSequences) ArgString() string

func (MaxTargetSequences) Flag 

func (MaxTargetSequences) Flag() string

func (MaxTargetSequences) FlagString 

func (m MaxTargetSequences) FlagString() string

func (MaxTargetSequences) Get 

func (m MaxTargetSequences) Get() uint32

func (MaxTargetSequences) IsDefault 

func (m MaxTargetSequences) IsDefault() bool

func (MaxTargetSequences) IsSet 

func (m MaxTargetSequences) IsSet() bool

func (*MaxTargetSequences) Set 

func (m *MaxTargetSequences) Set(val uint32)

func (*MaxTargetSequences) Unset 

func (m *MaxTargetSequences) Unset()

type MinRawGappedScore 

type MinRawGappedScore struct {
	// contains filtered or unexported fields
}

func NewEmptyMinRawGappedScore 

func NewEmptyMinRawGappedScore() MinRawGappedScore

func NewMinRawGappedScore 

func NewMinRawGappedScore(val int32) MinRawGappedScore

func (MinRawGappedScore) ArgString 

func (b MinRawGappedScore) ArgString() string

func (MinRawGappedScore) Flag 

func (b MinRawGappedScore) Flag() string

func (MinRawGappedScore) FlagString 

func (b MinRawGappedScore) FlagString() string

func (MinRawGappedScore) Get 

func (b MinRawGappedScore) Get() int32

func (MinRawGappedScore) IsDefault 

func (b MinRawGappedScore) IsDefault() bool

func (MinRawGappedScore) IsSet 

func (b MinRawGappedScore) IsSet() bool

func (*MinRawGappedScore) Set 

func (b *MinRawGappedScore) Set(val int32)

func (*MinRawGappedScore) Unset 

func (b *MinRawGappedScore) Unset()

type NegativeGIList 

type NegativeGIList struct {
	// contains filtered or unexported fields
}

func (NegativeGIList) Flag 

func (q NegativeGIList) Flag() string

func (NegativeGIList) FlagString 

func (q NegativeGIList) FlagString() string

func (NegativeGIList) Get 

func (q NegativeGIList) Get() string

func (NegativeGIList) IsDefault 

func (q NegativeGIList) IsDefault() bool

func (NegativeGIList) IsSet 

func (q NegativeGIList) IsSet() bool

func (*NegativeGIList) Set 

func (q *NegativeGIList) Set(val string)

func (*NegativeGIList) Unset 

func (q *NegativeGIList) Unset()

type NegativeIPGList 

type NegativeIPGList struct {
	// contains filtered or unexported fields
}

func (NegativeIPGList) Flag 

func (q NegativeIPGList) Flag() string

func (NegativeIPGList) FlagString 

func (q NegativeIPGList) FlagString() string

func (NegativeIPGList) Get 

func (q NegativeIPGList) Get() string

func (NegativeIPGList) IsDefault 

func (q NegativeIPGList) IsDefault() bool

func (NegativeIPGList) IsSet 

func (q NegativeIPGList) IsSet() bool

func (*NegativeIPGList) Set 

func (q *NegativeIPGList) Set(val string)

func (*NegativeIPGList) Unset 

func (q *NegativeIPGList) Unset()

type NegativeSequenceIDList 

type NegativeSequenceIDList struct {
	// contains filtered or unexported fields
}

func (NegativeSequenceIDList) Flag 

func (q NegativeSequenceIDList) Flag() string

func (NegativeSequenceIDList) FlagString 

func (q NegativeSequenceIDList) FlagString() string

func (NegativeSequenceIDList) Get 

func (q NegativeSequenceIDList) Get() string

func (NegativeSequenceIDList) IsDefault 

func (q NegativeSequenceIDList) IsDefault() bool

func (NegativeSequenceIDList) IsSet 

func (q NegativeSequenceIDList) IsSet() bool

func (*NegativeSequenceIDList) Set 

func (q *NegativeSequenceIDList) Set(val string)

func (*NegativeSequenceIDList) Unset 

func (q *NegativeSequenceIDList) Unset()

type NegativeTaxIDList 

type NegativeTaxIDList struct {
	// contains filtered or unexported fields
}

func (NegativeTaxIDList) Flag 

func (q NegativeTaxIDList) Flag() string

func (NegativeTaxIDList) FlagString 

func (q NegativeTaxIDList) FlagString() string

func (NegativeTaxIDList) Get 

func (q NegativeTaxIDList) Get() string

func (NegativeTaxIDList) IsDefault 

func (q NegativeTaxIDList) IsDefault() bool

func (NegativeTaxIDList) IsSet 

func (q NegativeTaxIDList) IsSet() bool

func (*NegativeTaxIDList) Set 

func (q *NegativeTaxIDList) Set(val string)

func (*NegativeTaxIDList) Unset 

func (q *NegativeTaxIDList) Unset()

type NegativeTaxIDs 

type NegativeTaxIDs []string

func (NegativeTaxIDs) Flag 

func (t NegativeTaxIDs) Flag() string

func (NegativeTaxIDs) FlagString 

func (t NegativeTaxIDs) FlagString() string

func (NegativeTaxIDs) IsDefault 

func (t NegativeTaxIDs) IsDefault() bool

func (*NegativeTaxIDs) UnmarshalJSONArray 

func (t *NegativeTaxIDs) UnmarshalJSONArray(dec *gojay.Decoder) error

type NonGreedy 

type NonGreedy struct {
	// contains filtered or unexported fields
}

func NewEmptyNonGreedy 

func NewEmptyNonGreedy() NonGreedy

func NewNonGreedy 

func NewNonGreedy(val bool) NonGreedy

func (NonGreedy) ArgString 

func (s NonGreedy) ArgString() string

func (NonGreedy) Flag 

func (s NonGreedy) Flag() string

func (NonGreedy) FlagString 

func (s NonGreedy) FlagString() string

func (NonGreedy) Get 

func (s NonGreedy) Get() bool

func (NonGreedy) IsDefault 

func (s NonGreedy) IsDefault() bool

func (NonGreedy) IsSet 

func (s NonGreedy) IsSet() bool

func (*NonGreedy) Set 

func (s *NonGreedy) Set(val bool)

func (*NonGreedy) Unset 

func (s *NonGreedy) Unset()

type NumAlignments 

type NumAlignments struct {
	// contains filtered or unexported fields
}

func NewEmptyNumAlignments 

func NewEmptyNumAlignments() NumAlignments

func NewNumAlignments 

func NewNumAlignments(val uint32) NumAlignments

func (NumAlignments) ArgString 

func (b NumAlignments) ArgString() string

func (NumAlignments) Flag 

func (b NumAlignments) Flag() string

func (NumAlignments) FlagString 

func (b NumAlignments) FlagString() string

func (NumAlignments) Get 

func (b NumAlignments) Get() uint32

func (NumAlignments) IsDefault 

func (b NumAlignments) IsDefault() bool

func (NumAlignments) IsSet 

func (b NumAlignments) IsSet() bool

func (*NumAlignments) Set 

func (b *NumAlignments) Set(val uint32)

func (*NumAlignments) Unset 

func (b *NumAlignments) Unset()

type NumDescriptions 

type NumDescriptions struct {
	// contains filtered or unexported fields
}

func NewEmptyNumDescriptions 

func NewEmptyNumDescriptions() NumDescriptions

func NewNumDescriptions 

func NewNumDescriptions(val uint32) NumDescriptions

func (NumDescriptions) ArgString 

func (b NumDescriptions) ArgString() string

func (NumDescriptions) Flag 

func (b NumDescriptions) Flag() string

func (NumDescriptions) FlagString 

func (b NumDescriptions) FlagString() string

func (NumDescriptions) Get 

func (b NumDescriptions) Get() uint32

func (NumDescriptions) IsDefault 

func (b NumDescriptions) IsDefault() bool

func (NumDescriptions) IsSet 

func (b NumDescriptions) IsSet() bool

func (*NumDescriptions) Set 

func (b *NumDescriptions) Set(val uint32)

func (*NumDescriptions) Unset 

func (b *NumDescriptions) Unset()

type NumIterations 

type NumIterations struct {
	// contains filtered or unexported fields
}

func NewEmptyNumIterations 

func NewEmptyNumIterations() NumIterations

func NewNumIterations 

func NewNumIterations(val uint32) NumIterations

func (NumIterations) ArgString 

func (b NumIterations) ArgString() string

func (NumIterations) Flag 

func (b NumIterations) Flag() string

func (NumIterations) FlagString 

func (b NumIterations) FlagString() string

func (NumIterations) Get 

func (b NumIterations) Get() uint32

func (NumIterations) IsDefault 

func (b NumIterations) IsDefault() bool

func (NumIterations) IsSet 

func (b NumIterations) IsSet() bool

func (*NumIterations) Set 

func (b *NumIterations) Set(val uint32)

func (*NumIterations) Unset 

func (b *NumIterations) Unset()

type OffDiagonalRange 

type OffDiagonalRange struct {
	// contains filtered or unexported fields
}

func NewEmptyOffDiagonalRange 

func NewEmptyOffDiagonalRange() OffDiagonalRange

func NewOffDiagonalRange 

func NewOffDiagonalRange(val uint32) OffDiagonalRange

func (OffDiagonalRange) ArgString 

func (m OffDiagonalRange) ArgString() string

func (OffDiagonalRange) Flag 

func (OffDiagonalRange) Flag() string

func (OffDiagonalRange) FlagString 

func (m OffDiagonalRange) FlagString() string

func (OffDiagonalRange) Get 

func (m OffDiagonalRange) Get() uint32

func (OffDiagonalRange) IsDefault 

func (m OffDiagonalRange) IsDefault() bool

func (OffDiagonalRange) IsSet 

func (m OffDiagonalRange) IsSet() bool

func (*OffDiagonalRange) Set 

func (m *OffDiagonalRange) Set(val uint32)

func (*OffDiagonalRange) Unset 

func (m *OffDiagonalRange) Unset()

type OutASCIIPSSMFile 

type OutASCIIPSSMFile struct {
	// contains filtered or unexported fields
}

func NewEmptyOutASCIIPSSMFile 

func NewEmptyOutASCIIPSSMFile() OutASCIIPSSMFile

func NewOutASCIIPSSMFile 

func NewOutASCIIPSSMFile(val string) OutASCIIPSSMFile

func (OutASCIIPSSMFile) Flag 

func (q OutASCIIPSSMFile) Flag() string

func (OutASCIIPSSMFile) FlagString 

func (q OutASCIIPSSMFile) FlagString() string

func (OutASCIIPSSMFile) Get 

func (q OutASCIIPSSMFile) Get() string

func (OutASCIIPSSMFile) IsDefault 

func (q OutASCIIPSSMFile) IsDefault() bool

func (OutASCIIPSSMFile) IsSet 

func (q OutASCIIPSSMFile) IsSet() bool

func (*OutASCIIPSSMFile) Set 

func (q *OutASCIIPSSMFile) Set(val string)

func (*OutASCIIPSSMFile) Unset 

func (q *OutASCIIPSSMFile) Unset()

type OutFile 

type OutFile struct {
	// contains filtered or unexported fields
}

func NewEmptyOutFile 

func NewEmptyOutFile() OutFile

func NewOutFile 

func NewOutFile(val string) OutFile

func (OutFile) Flag 

func (q OutFile) Flag() string

func (OutFile) FlagString 

func (q OutFile) FlagString() string

func (OutFile) Get 

func (q OutFile) Get() string

func (OutFile) IsDefault 

func (q OutFile) IsDefault() bool

func (OutFile) IsSet 

func (q OutFile) IsSet() bool

func (*OutFile) Set 

func (q *OutFile) Set(val string)

func (*OutFile) Unset 

func (q *OutFile) Unset()

type OutPSSMFile 

type OutPSSMFile struct {
	// contains filtered or unexported fields
}

func NewEmptyOutPSSMFile 

func NewEmptyOutPSSMFile() OutPSSMFile

func NewOutPSSMFile 

func NewOutPSSMFile(val string) OutPSSMFile

func (OutPSSMFile) Flag 

func (q OutPSSMFile) Flag() string

func (OutPSSMFile) FlagString 

func (q OutPSSMFile) FlagString() string

func (OutPSSMFile) Get 

func (q OutPSSMFile) Get() string

func (OutPSSMFile) IsDefault 

func (q OutPSSMFile) IsDefault() bool

func (OutPSSMFile) IsSet 

func (q OutPSSMFile) IsSet() bool

func (*OutPSSMFile) Set 

func (q *OutPSSMFile) Set(val string)

func (*OutPSSMFile) Unset 

func (q *OutPSSMFile) Unset()

type ParseDefLines 

type ParseDefLines struct {
	// contains filtered or unexported fields
}

func NewEmptyParseDefLines 

func NewEmptyParseDefLines() ParseDefLines

func NewParseDefLines 

func NewParseDefLines(val bool) ParseDefLines

func (ParseDefLines) ArgString 

func (s ParseDefLines) ArgString() string

func (ParseDefLines) Flag 

func (s ParseDefLines) Flag() string

func (ParseDefLines) FlagString 

func (s ParseDefLines) FlagString() string

func (ParseDefLines) Get 

func (s ParseDefLines) Get() bool

func (ParseDefLines) IsDefault 

func (s ParseDefLines) IsDefault() bool

func (ParseDefLines) IsSet 

func (s ParseDefLines) IsSet() bool

func (*ParseDefLines) Set 

func (s *ParseDefLines) Set(val bool)

func (*ParseDefLines) Unset 

func (s *ParseDefLines) Unset()

type Penalty 

type Penalty struct {
	// contains filtered or unexported fields
}

func NewEmptyPenalty 

func NewEmptyPenalty() Penalty

func NewPenalty 

func NewPenalty(val int32) Penalty

func (Penalty) ArgString 

func (b Penalty) ArgString() string

func (Penalty) Flag 

func (b Penalty) Flag() string

func (Penalty) FlagString 

func (b Penalty) FlagString() string

func (Penalty) Get 

func (b Penalty) Get() int32

func (Penalty) IsDefault 

func (b Penalty) IsDefault() bool

func (Penalty) IsSet 

func (b Penalty) IsSet() bool

func (*Penalty) Set 

func (b *Penalty) Set(val int32)

func (*Penalty) Unset 

func (b *Penalty) Unset()

type PercentIdentity 

type PercentIdentity struct {
	// contains filtered or unexported fields
}

func NewEmptyPercentIdentity 

func NewEmptyPercentIdentity() PercentIdentity

func NewPercentIdentity 

func NewPercentIdentity(val float64) PercentIdentity

func (PercentIdentity) ArgString 

func (b PercentIdentity) ArgString() string

func (PercentIdentity) Flag 

func (b PercentIdentity) Flag() string

func (PercentIdentity) FlagString 

func (b PercentIdentity) FlagString() string

func (PercentIdentity) Get 

func (b PercentIdentity) Get() float64

func (PercentIdentity) IsDefault 

func (b PercentIdentity) IsDefault() bool

func (PercentIdentity) IsSet 

func (b PercentIdentity) IsSet() bool

func (*PercentIdentity) Set 

func (b *PercentIdentity) Set(val float64)

func (*PercentIdentity) Unset 

func (b *PercentIdentity) Unset()

type PhiPatternFile 

type PhiPatternFile struct {
	// contains filtered or unexported fields
}

func NewEmptyPhiPatternFile 

func NewEmptyPhiPatternFile() PhiPatternFile

func NewPhiPatternFile 

func NewPhiPatternFile(val string) PhiPatternFile

func (PhiPatternFile) Flag 

func (q PhiPatternFile) Flag() string

func (PhiPatternFile) FlagString 

func (q PhiPatternFile) FlagString() string

func (PhiPatternFile) Get 

func (q PhiPatternFile) Get() string

func (PhiPatternFile) IsDefault 

func (q PhiPatternFile) IsDefault() bool

func (PhiPatternFile) IsSet 

func (q PhiPatternFile) IsSet() bool

func (*PhiPatternFile) Set 

func (q *PhiPatternFile) Set(val string)

func (*PhiPatternFile) Unset 

func (q *PhiPatternFile) Unset()

type Pseudocount 

type Pseudocount struct {
	// contains filtered or unexported fields
}

func NewEmptyPseudocount 

func NewEmptyPseudocount() Pseudocount

func NewPseudocount 

func NewPseudocount(val int32) Pseudocount

func (Pseudocount) ArgString 

func (b Pseudocount) ArgString() string

func (Pseudocount) Flag 

func (b Pseudocount) Flag() string

func (Pseudocount) FlagString 

func (b Pseudocount) FlagString() string

func (Pseudocount) Get 

func (b Pseudocount) Get() int32

func (Pseudocount) IsDefault 

func (b Pseudocount) IsDefault() bool

func (Pseudocount) IsSet 

func (b Pseudocount) IsSet() bool

func (*Pseudocount) Set 

func (b *Pseudocount) Set(val int32)

func (*Pseudocount) Unset 

func (b *Pseudocount) Unset()

type QueryCoverageHSPPercent 

type QueryCoverageHSPPercent struct {
	// contains filtered or unexported fields
}

func NewEmptyQueryCoverageHSPPercent 

func NewEmptyQueryCoverageHSPPercent() QueryCoverageHSPPercent

func NewQueryCoverageHSPPercent 

func NewQueryCoverageHSPPercent(val float64) QueryCoverageHSPPercent

func (QueryCoverageHSPPercent) ArgString 

func (b QueryCoverageHSPPercent) ArgString() string

func (QueryCoverageHSPPercent) Flag 

func (b QueryCoverageHSPPercent) Flag() string

func (QueryCoverageHSPPercent) FlagString 

func (b QueryCoverageHSPPercent) FlagString() string

func (QueryCoverageHSPPercent) Get 

func (b QueryCoverageHSPPercent) Get() float64

func (QueryCoverageHSPPercent) IsDefault 

func (b QueryCoverageHSPPercent) IsDefault() bool

func (QueryCoverageHSPPercent) IsSet 

func (b QueryCoverageHSPPercent) IsSet() bool

func (*QueryCoverageHSPPercent) Set 

func (b *QueryCoverageHSPPercent) Set(val float64)

func (*QueryCoverageHSPPercent) Unset 

func (b *QueryCoverageHSPPercent) Unset()

type QueryFile 

type QueryFile struct {
	// contains filtered or unexported fields
}

func NewEmptyQueryFile 

func NewEmptyQueryFile() QueryFile

func NewQueryFile 

func NewQueryFile(val string) QueryFile

func (QueryFile) Flag 

func (q QueryFile) Flag() string

func (QueryFile) FlagString 

func (q QueryFile) FlagString() string

func (QueryFile) Get 

func (q QueryFile) Get() string

func (QueryFile) IsDefault 

func (q QueryFile) IsDefault() bool

func (QueryFile) IsSet 

func (q QueryFile) IsSet() bool

func (*QueryFile) Set 

func (q *QueryFile) Set(val string)

func (*QueryFile) Unset 

func (q *QueryFile) Unset()

type QueryGenCode 

type QueryGenCode struct {
	// contains filtered or unexported fields
}

func (QueryGenCode) Flag 

func (q QueryGenCode) Flag() string

func (QueryGenCode) FlagString 

func (q QueryGenCode) FlagString() string

func (QueryGenCode) Get 

func (q QueryGenCode) Get() uint8

func (QueryGenCode) IsDefault 

func (q QueryGenCode) IsDefault() bool

func (QueryGenCode) IsSet 

func (q QueryGenCode) IsSet() bool

func (*QueryGenCode) Set 

func (q *QueryGenCode) Set(val uint8)

func (*QueryGenCode) Unset 

func (q *QueryGenCode) Unset()

type QueryLocation 

type QueryLocation struct {
	// contains filtered or unexported fields
}

func NewEmptyQueryLocation 

func NewEmptyQueryLocation() QueryLocation

func NewQueryLocation 

func NewQueryLocation(start, stop uint32) QueryLocation

func (QueryLocation) ArgString 

func (l QueryLocation) ArgString() string

func (QueryLocation) Flag 

func (q QueryLocation) Flag() string

func (QueryLocation) FlagString 

func (q QueryLocation) FlagString() string

func (QueryLocation) IsDefault 

func (l QueryLocation) IsDefault() bool

func (*QueryLocation) NKeys 

func (l *QueryLocation) NKeys() int

func (*QueryLocation) UnmarshalJSONObject 

func (l *QueryLocation) UnmarshalJSONObject(dec *gojay.Decoder, key string) error

type RPSDBFile 

type RPSDBFile struct {
	// contains filtered or unexported fields
}

func NewEmptyRPSDBFile 

func NewEmptyRPSDBFile() RPSDBFile

func NewRPSDBFile 

func NewRPSDBFile(val string) RPSDBFile

func (RPSDBFile) Flag 

func (q RPSDBFile) Flag() string

func (RPSDBFile) FlagString 

func (q RPSDBFile) FlagString() string

func (RPSDBFile) Get 

func (q RPSDBFile) Get() string

func (RPSDBFile) IsDefault 

func (q RPSDBFile) IsDefault() bool

func (RPSDBFile) IsSet 

func (q RPSDBFile) IsSet() bool

func (*RPSDBFile) Set 

func (q *RPSDBFile) Set(val string)

func (*RPSDBFile) Unset 

func (q *RPSDBFile) Unset()

type Remote 

type Remote struct {
	// contains filtered or unexported fields
}

func NewEmptyRemote 

func NewEmptyRemote() Remote

func NewRemote 

func NewRemote(val bool) Remote

func (Remote) Flag 

func (s Remote) Flag() string

func (Remote) FlagString 

func (s Remote) FlagString() string

func (Remote) Get 

func (s Remote) Get() bool

func (Remote) IsDefault 

func (s Remote) IsDefault() bool

func (Remote) IsSet 

func (s Remote) IsSet() bool

func (*Remote) Set 

func (s *Remote) Set(val bool)

func (*Remote) Unset 

func (s *Remote) Unset()

type RequestID 

type RequestID struct {
	// contains filtered or unexported fields
}

func NewEmptyRequestID 

func NewEmptyRequestID() RequestID

func NewRequestID 

func NewRequestID(val string) RequestID

func (RequestID) Flag 

func (q RequestID) Flag() string

func (RequestID) FlagString 

func (q RequestID) FlagString() string

func (RequestID) Get 

func (q RequestID) Get() string

func (RequestID) IsDefault 

func (q RequestID) IsDefault() bool

func (RequestID) IsSet 

func (q RequestID) IsSet() bool

func (*RequestID) Set 

func (q *RequestID) Set(val string)

func (*RequestID) Unset 

func (q *RequestID) Unset()

type Reward 

type Reward struct {
	// contains filtered or unexported fields
}

func NewEmptyReward 

func NewEmptyReward() Reward

func NewReward 

func NewReward(val uint32) Reward

func (Reward) ArgString 

func (b Reward) ArgString() string

func (Reward) Flag 

func (b Reward) Flag() string

func (Reward) FlagString 

func (b Reward) FlagString() string

func (Reward) Get 

func (b Reward) Get() uint32

func (Reward) IsDefault 

func (b Reward) IsDefault() bool

func (Reward) IsSet 

func (b Reward) IsSet() bool

func (*Reward) Set 

func (b *Reward) Set(val uint32)

func (*Reward) Unset 

func (b *Reward) Unset()

type SaveEachPSSM 

type SaveEachPSSM struct {
	// contains filtered or unexported fields
}

func NewEmptySaveEachPSSM 

func NewEmptySaveEachPSSM() SaveEachPSSM

func NewSaveEachPSSM 

func NewSaveEachPSSM(val bool) SaveEachPSSM

func (SaveEachPSSM) Flag 

func (s SaveEachPSSM) Flag() string

func (SaveEachPSSM) FlagString 

func (s SaveEachPSSM) FlagString() string

func (SaveEachPSSM) Get 

func (s SaveEachPSSM) Get() bool

func (SaveEachPSSM) IsDefault 

func (s SaveEachPSSM) IsDefault() bool

func (SaveEachPSSM) IsSet 

func (s SaveEachPSSM) IsSet() bool

func (*SaveEachPSSM) Set 

func (s *SaveEachPSSM) Set(val bool)

func (*SaveEachPSSM) Unset 

func (s *SaveEachPSSM) Unset()

type SavePSSMAfterLastRound 

type SavePSSMAfterLastRound struct {
	// contains filtered or unexported fields
}

func NewEmptySavePSSMAfterLastRound 

func NewEmptySavePSSMAfterLastRound() SavePSSMAfterLastRound

func NewSavePSSMAfterLastRound 

func NewSavePSSMAfterLastRound(val bool) SavePSSMAfterLastRound

func (SavePSSMAfterLastRound) Flag 

func (s SavePSSMAfterLastRound) Flag() string

func (SavePSSMAfterLastRound) FlagString 

func (s SavePSSMAfterLastRound) FlagString() string

func (SavePSSMAfterLastRound) Get 

func (s SavePSSMAfterLastRound) Get() bool

func (SavePSSMAfterLastRound) IsDefault 

func (s SavePSSMAfterLastRound) IsDefault() bool

func (SavePSSMAfterLastRound) IsSet 

func (s SavePSSMAfterLastRound) IsSet() bool

func (*SavePSSMAfterLastRound) Set 

func (s *SavePSSMAfterLastRound) Set(val bool)

func (*SavePSSMAfterLastRound) Unset 

func (s *SavePSSMAfterLastRound) Unset()

type SearchSpace 

type SearchSpace struct {
	// contains filtered or unexported fields
}

func NewEmptySearchSpace 

func NewEmptySearchSpace() SearchSpace

func NewSearchSpace 

func NewSearchSpace(val uint8) SearchSpace

func (SearchSpace) ArgString 

func (s SearchSpace) ArgString() string

func (SearchSpace) Flag 

func (s SearchSpace) Flag() string

func (SearchSpace) FlagString 

func (s SearchSpace) FlagString() string

func (SearchSpace) Get 

func (s SearchSpace) Get() uint8

func (SearchSpace) IsDefault 

func (s SearchSpace) IsDefault() bool

func (SearchSpace) IsSet 

func (s SearchSpace) IsSet() bool

func (*SearchSpace) Set 

func (s *SearchSpace) Set(val uint8)

func (*SearchSpace) Unset 

func (s *SearchSpace) Unset()

type Seg 

type Seg interface {
	cli.Appender

	IsYes() bool
	IsNo() bool
	IsWLH() bool

	Window() int32
	Locut() float64
	Hicut() float64
}

func DecodeJSONSeg 

func DecodeJSONSeg(dec *gojay.Decoder) (Seg, error)

func NewNoSeg 

func NewNoSeg() Seg

func NewSeg 

func NewSeg(window int32, locut, hicut float64) Seg

func NewYesSeg 

func NewYesSeg() Seg

type SequenceIDList 

type SequenceIDList struct {
	// contains filtered or unexported fields
}

func (SequenceIDList) Flag 

func (q SequenceIDList) Flag() string

func (SequenceIDList) FlagString 

func (q SequenceIDList) FlagString() string

func (SequenceIDList) Get 

func (q SequenceIDList) Get() string

func (SequenceIDList) IsDefault 

func (q SequenceIDList) IsDefault() bool

func (SequenceIDList) IsSet 

func (q SequenceIDList) IsSet() bool

func (*SequenceIDList) Set 

func (q *SequenceIDList) Set(val string)

func (*SequenceIDList) Unset 

func (q *SequenceIDList) Unset()

type ShortCompBasedStats 

type ShortCompBasedStats struct {
	// contains filtered or unexported fields
}

func (ShortCompBasedStats) Flag 

func (f ShortCompBasedStats) Flag() string

func (ShortCompBasedStats) FlagString 

func (f ShortCompBasedStats) FlagString() string

func (ShortCompBasedStats) Get 

func (f ShortCompBasedStats) Get() ShortCompBasedStatsEnum

func (ShortCompBasedStats) IsDefault 

func (f ShortCompBasedStats) IsDefault() bool

func (ShortCompBasedStats) IsSet 

func (f ShortCompBasedStats) IsSet() bool

func (*ShortCompBasedStats) Set 

func (f *ShortCompBasedStats) Set(val ShortCompBasedStatsEnum)

func (*ShortCompBasedStats) Unset 

func (f *ShortCompBasedStats) Unset()

type ShortCompBasedStatsEnum 

type ShortCompBasedStatsEnum uint8
const (
	ShortCompBasedStatsNone ShortCompBasedStatsEnum = iota
	ShortCompBasedStatsStatistics
)

func (ShortCompBasedStatsEnum) String 

func (f ShortCompBasedStatsEnum) String() string

type ShortHelp 

type ShortHelp struct {
	// contains filtered or unexported fields
}

func NewEmptyShortHelp 

func NewEmptyShortHelp() ShortHelp

func NewShortHelp 

func NewShortHelp(val bool) ShortHelp

func (ShortHelp) Flag 

func (s ShortHelp) Flag() string

func (ShortHelp) FlagString 

func (s ShortHelp) FlagString() string

func (ShortHelp) Get 

func (s ShortHelp) Get() bool

func (ShortHelp) IsDefault 

func (s ShortHelp) IsDefault() bool

func (ShortHelp) IsSet 

func (s ShortHelp) IsSet() bool

func (*ShortHelp) Set 

func (s *ShortHelp) Set(val bool)

func (*ShortHelp) Unset 

func (s *ShortHelp) Unset()

type ShowDomainHits 

type ShowDomainHits struct {
	// contains filtered or unexported fields
}

func NewEmptyShowDomainHits 

func NewEmptyShowDomainHits() ShowDomainHits

func NewShowDomainHits 

func NewShowDomainHits(val bool) ShowDomainHits

func (ShowDomainHits) Flag 

func (s ShowDomainHits) Flag() string

func (ShowDomainHits) FlagString 

func (s ShowDomainHits) FlagString() string

func (ShowDomainHits) Get 

func (s ShowDomainHits) Get() bool

func (ShowDomainHits) IsDefault 

func (s ShowDomainHits) IsDefault() bool

func (ShowDomainHits) IsSet 

func (s ShowDomainHits) IsSet() bool

func (*ShowDomainHits) Set 

func (s *ShowDomainHits) Set(val bool)

func (*ShowDomainHits) Unset 

func (s *ShowDomainHits) Unset()

type ShowGIs 

type ShowGIs struct {
	// contains filtered or unexported fields
}

func NewEmptyShowGIs 

func NewEmptyShowGIs() ShowGIs

func NewShowGIs 

func NewShowGIs(val bool) ShowGIs

func (ShowGIs) Flag 

func (s ShowGIs) Flag() string

func (ShowGIs) FlagString 

func (s ShowGIs) FlagString() string

func (ShowGIs) Get 

func (s ShowGIs) Get() bool

func (ShowGIs) IsDefault 

func (s ShowGIs) IsDefault() bool

func (ShowGIs) IsSet 

func (s ShowGIs) IsSet() bool

func (*ShowGIs) Set 

func (s *ShowGIs) Set(val bool)

func (*ShowGIs) Unset 

func (s *ShowGIs) Unset()

type SoftMasking 

type SoftMasking struct {
	// contains filtered or unexported fields
}

func NewEmptySoftMasking 

func NewEmptySoftMasking() SoftMasking

func NewSoftMasking 

func NewSoftMasking(val bool) SoftMasking

func (SoftMasking) ArgString 

func (s SoftMasking) ArgString() string

func (SoftMasking) Flag 

func (SoftMasking) Flag() string

func (SoftMasking) FlagString 

func (s SoftMasking) FlagString() string

func (SoftMasking) Get 

func (s SoftMasking) Get() bool

func (SoftMasking) IsDefault 

func (s SoftMasking) IsDefault() bool

func (SoftMasking) IsSet 

func (s SoftMasking) IsSet() bool

func (*SoftMasking) Set 

func (s *SoftMasking) Set(val bool)

func (*SoftMasking) Unset 

func (s *SoftMasking) Unset()

type Strand 

type Strand struct {
	// contains filtered or unexported fields
}

func NewEmptyStrand 

func NewEmptyStrand() Strand

func NewStrand 

func NewStrand(val StrandType) Strand

func (Strand) Flag 

func (s Strand) Flag() string

func (Strand) FlagString 

func (s Strand) FlagString() string

func (Strand) Get 

func (s Strand) Get() StrandType

func (Strand) IsDefault 

func (s Strand) IsDefault() bool

func (Strand) IsSet 

func (s Strand) IsSet() bool

func (*Strand) Set 

func (s *Strand) Set(val StrandType)

func (*Strand) Unset 

func (s *Strand) Unset()

type StrandType 

type StrandType string
const (
	StrandTypeBoth  StrandType = "both"
	StrandTypeMinus StrandType = "minus"
	StrandTypePlus  StrandType = "plus"
)

func (StrandType) String 

func (s StrandType) String() string

type SubjectBestHit 

type SubjectBestHit struct {
	// contains filtered or unexported fields
}

func NewEmptySubjectBestHit 

func NewEmptySubjectBestHit() SubjectBestHit

func NewSubjectBestHit 

func NewSubjectBestHit(val bool) SubjectBestHit

func (SubjectBestHit) ArgString 

func (s SubjectBestHit) ArgString() string

func (SubjectBestHit) Flag 

func (s SubjectBestHit) Flag() string

func (SubjectBestHit) FlagString 

func (s SubjectBestHit) FlagString() string

func (SubjectBestHit) Get 

func (s SubjectBestHit) Get() bool

func (SubjectBestHit) IsDefault 

func (s SubjectBestHit) IsDefault() bool

func (SubjectBestHit) IsSet 

func (s SubjectBestHit) IsSet() bool

func (*SubjectBestHit) Set 

func (s *SubjectBestHit) Set(val bool)

func (*SubjectBestHit) Unset 

func (s *SubjectBestHit) Unset()

type SubjectFile 

type SubjectFile struct {
	// contains filtered or unexported fields
}

func NewEmptySubjectFile 

func NewEmptySubjectFile() SubjectFile

func NewSubjectFile 

func NewSubjectFile(val string) SubjectFile

func (SubjectFile) Flag 

func (q SubjectFile) Flag() string

func (SubjectFile) FlagString 

func (q SubjectFile) FlagString() string

func (SubjectFile) Get 

func (q SubjectFile) Get() string

func (SubjectFile) IsDefault 

func (q SubjectFile) IsDefault() bool

func (SubjectFile) IsSet 

func (q SubjectFile) IsSet() bool

func (*SubjectFile) Set 

func (q *SubjectFile) Set(val string)

func (*SubjectFile) Unset 

func (q *SubjectFile) Unset()

type SubjectLocation 

type SubjectLocation struct {
	// contains filtered or unexported fields
}

func NewEmptySubjectLocation 

func NewEmptySubjectLocation() SubjectLocation

func NewSubjectLocation 

func NewSubjectLocation(start, stop uint32) SubjectLocation

func (SubjectLocation) ArgString 

func (l SubjectLocation) ArgString() string

func (SubjectLocation) Flag 

func (s SubjectLocation) Flag() string

func (SubjectLocation) FlagString 

func (s SubjectLocation) FlagString() string

func (SubjectLocation) IsDefault 

func (l SubjectLocation) IsDefault() bool

func (*SubjectLocation) NKeys 

func (l *SubjectLocation) NKeys() int

func (*SubjectLocation) UnmarshalJSONObject 

func (l *SubjectLocation) UnmarshalJSONObject(dec *gojay.Decoder, key string) error

type SumStats 

type SumStats struct {
	// contains filtered or unexported fields
}

func NewEmptySumStats 

func NewEmptySumStats() SumStats

func NewSumStats 

func NewSumStats(val bool) SumStats

func (SumStats) Flag 

func (s SumStats) Flag() string

func (SumStats) FlagString 

func (s SumStats) FlagString() string

func (SumStats) Get 

func (s SumStats) Get() bool

func (SumStats) IsDefault 

func (s SumStats) IsDefault() bool

func (SumStats) IsSet 

func (s SumStats) IsSet() bool

func (*SumStats) Set 

func (s *SumStats) Set(val bool)

func (*SumStats) Unset 

func (s *SumStats) Unset()

type TBlastNTask 

type TBlastNTask struct {
	// contains filtered or unexported fields
}

func (TBlastNTask) Flag 

func (t TBlastNTask) Flag() string

func (TBlastNTask) FlagString 

func (t TBlastNTask) FlagString() string

func (TBlastNTask) Get 

func (t TBlastNTask) Get() TBlastNTaskType

func (TBlastNTask) IsDefault 

func (t TBlastNTask) IsDefault() bool

func (TBlastNTask) IsSet 

func (t TBlastNTask) IsSet() bool

func (*TBlastNTask) Set 

func (t *TBlastNTask) Set(val TBlastNTaskType)

func (*TBlastNTask) Unset 

func (t *TBlastNTask) Unset()

type TBlastNTaskType 

type TBlastNTaskType string
const (
	TBlastNTaskTBlastN     TBlastNTaskType = "tblastn"
	TBlastNTaskTBlastNFast TBlastNTaskType = "tblastn-fast"
)

func (TBlastNTaskType) String 

func (t TBlastNTaskType) String() string

type TaxIDList 

type TaxIDList struct {
	// contains filtered or unexported fields
}

func (TaxIDList) Flag 

func (q TaxIDList) Flag() string

func (TaxIDList) FlagString 

func (q TaxIDList) FlagString() string

func (TaxIDList) Get 

func (q TaxIDList) Get() string

func (TaxIDList) IsDefault 

func (q TaxIDList) IsDefault() bool

func (TaxIDList) IsSet 

func (q TaxIDList) IsSet() bool

func (*TaxIDList) Set 

func (q *TaxIDList) Set(val string)

func (*TaxIDList) Unset 

func (q *TaxIDList) Unset()

type TaxIDs 

type TaxIDs []string

func (TaxIDs) Flag 

func (t TaxIDs) Flag() string

func (TaxIDs) FlagString 

func (t TaxIDs) FlagString() string

func (TaxIDs) IsDefault 

func (t TaxIDs) IsDefault() bool

func (*TaxIDs) UnmarshalJSONArray 

func (t *TaxIDs) UnmarshalJSONArray(dec *gojay.Decoder) error

type TemplateLength 

type TemplateLength struct {
	// contains filtered or unexported fields
}

func (TemplateLength) Flag 

func (t TemplateLength) Flag() string

func (TemplateLength) FlagString 

func (t TemplateLength) FlagString() string

func (TemplateLength) Get 

func (t TemplateLength) Get() TemplateLengthEnum

func (TemplateLength) IsDefault 

func (t TemplateLength) IsDefault() bool

func (TemplateLength) IsSet 

func (t TemplateLength) IsSet() bool

func (*TemplateLength) Set 

func (t *TemplateLength) Set(val TemplateLengthEnum)

func (*TemplateLength) Unset 

func (t *TemplateLength) Unset()

type TemplateLengthEnum 

type TemplateLengthEnum uint8
const (
	TemplateLengthEnum16 TemplateLengthEnum = 16
	TemplateLengthEnum18 TemplateLengthEnum = 18
	TemplateLengthEnum21 TemplateLengthEnum = 21
)

type TemplateType 

type TemplateType struct {
	// contains filtered or unexported fields
}

func (TemplateType) Flag 

func (t TemplateType) Flag() string

func (TemplateType) FlagString 

func (t TemplateType) FlagString() string

func (TemplateType) Get 

func (t TemplateType) Get() TemplateTypeEnum

func (TemplateType) IsDefault 

func (t TemplateType) IsDefault() bool

func (TemplateType) IsSet 

func (t TemplateType) IsSet() bool

func (*TemplateType) Set 

func (t *TemplateType) Set(enum TemplateTypeEnum)

func (*TemplateType) Unset 

func (t *TemplateType) Unset()

type TemplateTypeEnum 

type TemplateTypeEnum string
const (
	TemplateTypeEnumCoding           TemplateTypeEnum = "coding"
	TemplateTypeEnumCodingAndOptimal TemplateTypeEnum = "coding_and_optimal"
	TemplateTypeEnumOptimal          TemplateTypeEnum = "optimal"
)

type ThreadCount 

type ThreadCount struct {
	// contains filtered or unexported fields
}

func NewEmptyThreadCount 

func NewEmptyThreadCount() ThreadCount

func NewThreadCount 

func NewThreadCount(val uint8) ThreadCount

func (ThreadCount) ArgString 

func (s ThreadCount) ArgString() string

func (ThreadCount) Flag 

func (s ThreadCount) Flag() string

func (ThreadCount) FlagString 

func (s ThreadCount) FlagString() string

func (ThreadCount) Get 

func (s ThreadCount) Get() uint8

func (ThreadCount) IsDefault 

func (s ThreadCount) IsDefault() bool

func (ThreadCount) IsSet 

func (s ThreadCount) IsSet() bool

func (*ThreadCount) Set 

func (s *ThreadCount) Set(val uint8)

func (*ThreadCount) Unset 

func (s *ThreadCount) Unset()

type ThreadMode 

type ThreadMode struct {
	// contains filtered or unexported fields
}

func (ThreadMode) Flag 

func (t ThreadMode) Flag() string

func (ThreadMode) FlagString 

func (t ThreadMode) FlagString() string

func (ThreadMode) Get 

func (t ThreadMode) Get() ThreadModeValue

func (ThreadMode) IsDefault 

func (t ThreadMode) IsDefault() bool

func (ThreadMode) IsSet 

func (t ThreadMode) IsSet() bool

func (*ThreadMode) Set 

func (t *ThreadMode) Set(val ThreadModeValue)

func (*ThreadMode) Unset 

func (t *ThreadMode) Unset()

type ThreadModeValue 

type ThreadModeValue uint8
const (
	ThreadModeAuto ThreadModeValue = iota
	ThreadModeDisable
)

func (ThreadModeValue) String 

func (t ThreadModeValue) String() string

type Threshold 

type Threshold struct {
	// contains filtered or unexported fields
}

func NewEmptyThreshold 

func NewEmptyThreshold() Threshold

func NewThreshold 

func NewThreshold(val float64) Threshold

func (Threshold) ArgString 

func (b Threshold) ArgString() string

func (Threshold) Flag 

func (b Threshold) Flag() string

func (Threshold) FlagString 

func (b Threshold) FlagString() string

func (Threshold) Get 

func (b Threshold) Get() float64

func (Threshold) IsDefault 

func (b Threshold) IsDefault() bool

func (Threshold) IsSet 

func (b Threshold) IsSet() bool

func (*Threshold) Set 

func (b *Threshold) Set(val float64)

func (*Threshold) Unset 

func (b *Threshold) Unset()

type UngappedAlignmentsOnly 

type UngappedAlignmentsOnly struct {
	// contains filtered or unexported fields
}

func NewEmptyUngappedAlignmentsOnly 

func NewEmptyUngappedAlignmentsOnly() UngappedAlignmentsOnly

func NewUngappedAlignmentsOnly 

func NewUngappedAlignmentsOnly(val bool) UngappedAlignmentsOnly

func (UngappedAlignmentsOnly) ArgString 

func (s UngappedAlignmentsOnly) ArgString() string

func (UngappedAlignmentsOnly) Flag 

func (s UngappedAlignmentsOnly) Flag() string

func (UngappedAlignmentsOnly) FlagString 

func (s UngappedAlignmentsOnly) FlagString() string

func (UngappedAlignmentsOnly) Get 

func (s UngappedAlignmentsOnly) Get() bool

func (UngappedAlignmentsOnly) IsDefault 

func (s UngappedAlignmentsOnly) IsDefault() bool

func (UngappedAlignmentsOnly) IsSet 

func (s UngappedAlignmentsOnly) IsSet() bool

func (*UngappedAlignmentsOnly) Set 

func (s *UngappedAlignmentsOnly) Set(val bool)

func (*UngappedAlignmentsOnly) Unset 

func (s *UngappedAlignmentsOnly) Unset()

type UseIndex 

type UseIndex struct {
	// contains filtered or unexported fields
}

func NewEmptyUseIndex 

func NewEmptyUseIndex() UseIndex

func NewUseIndex 

func NewUseIndex(val bool) UseIndex

func (UseIndex) ArgString 

func (s UseIndex) ArgString() string

func (UseIndex) Flag 

func (UseIndex) Flag() string

func (UseIndex) FlagString 

func (s UseIndex) FlagString() string

func (UseIndex) Get 

func (s UseIndex) Get() bool

func (UseIndex) IsDefault 

func (s UseIndex) IsDefault() bool

func (UseIndex) IsSet 

func (s UseIndex) IsSet() bool

func (*UseIndex) Set 

func (s *UseIndex) Set(val bool)

func (*UseIndex) Unset 

func (s *UseIndex) Unset()

type UseSmithWatermanTraceback 

type UseSmithWatermanTraceback struct {
	// contains filtered or unexported fields
}

func NewEmptyUseSmithWatermanTraceback 

func NewEmptyUseSmithWatermanTraceback() UseSmithWatermanTraceback

func NewUseSmithWatermanTraceback 

func NewUseSmithWatermanTraceback(val bool) UseSmithWatermanTraceback

func (UseSmithWatermanTraceback) Flag 

func (s UseSmithWatermanTraceback) Flag() string

func (UseSmithWatermanTraceback) FlagString 

func (s UseSmithWatermanTraceback) FlagString() string

func (UseSmithWatermanTraceback) Get 

func (s UseSmithWatermanTraceback) Get() bool

func (UseSmithWatermanTraceback) IsDefault 

func (s UseSmithWatermanTraceback) IsDefault() bool

func (UseSmithWatermanTraceback) IsSet 

func (s UseSmithWatermanTraceback) IsSet() bool

func (*UseSmithWatermanTraceback) Set 

func (s *UseSmithWatermanTraceback) Set(val bool)

func (*UseSmithWatermanTraceback) Unset 

func (s *UseSmithWatermanTraceback) Unset()

type Version 

type Version struct {
	// contains filtered or unexported fields
}

func NewEmptyVersion 

func NewEmptyVersion() Version

func NewVersion 

func NewVersion(val bool) Version

func (Version) Flag 

func (s Version) Flag() string

func (Version) FlagString 

func (s Version) FlagString() string

func (Version) Get 

func (s Version) Get() bool

func (Version) IsDefault 

func (s Version) IsDefault() bool

func (Version) IsSet 

func (s Version) IsSet() bool

func (*Version) Set 

func (s *Version) Set(val bool)

func (*Version) Unset 

func (s *Version) Unset()

type WindowMaskerDB 

type WindowMaskerDB struct {
	// contains filtered or unexported fields
}

func NewEmptyWindowMaskerDB 

func NewEmptyWindowMaskerDB() WindowMaskerDB

func NewWindowMaskerDB 

func NewWindowMaskerDB(val string) WindowMaskerDB

func (WindowMaskerDB) Flag 

func (q WindowMaskerDB) Flag() string

func (WindowMaskerDB) FlagString 

func (q WindowMaskerDB) FlagString() string

func (WindowMaskerDB) Get 

func (q WindowMaskerDB) Get() string

func (WindowMaskerDB) IsDefault 

func (q WindowMaskerDB) IsDefault() bool

func (WindowMaskerDB) IsSet 

func (q WindowMaskerDB) IsSet() bool

func (*WindowMaskerDB) Set 

func (q *WindowMaskerDB) Set(val string)

func (*WindowMaskerDB) Unset 

func (q *WindowMaskerDB) Unset()

type WindowMaskerTaxID 

type WindowMaskerTaxID struct {
	// contains filtered or unexported fields
}

func NewEmptyWindowMaskerTaxID 

func NewEmptyWindowMaskerTaxID() WindowMaskerTaxID

func NewWindowMaskerTaxID 

func NewWindowMaskerTaxID(val int32) WindowMaskerTaxID

func (WindowMaskerTaxID) ArgString 

func (b WindowMaskerTaxID) ArgString() string

func (WindowMaskerTaxID) Flag 

func (b WindowMaskerTaxID) Flag() string

func (WindowMaskerTaxID) FlagString 

func (b WindowMaskerTaxID) FlagString() string

func (WindowMaskerTaxID) Get 

func (b WindowMaskerTaxID) Get() int32

func (WindowMaskerTaxID) IsDefault 

func (b WindowMaskerTaxID) IsDefault() bool

func (WindowMaskerTaxID) IsSet 

func (b WindowMaskerTaxID) IsSet() bool

func (*WindowMaskerTaxID) Set 

func (b *WindowMaskerTaxID) Set(val int32)

func (*WindowMaskerTaxID) Unset 

func (b *WindowMaskerTaxID) Unset()

type WindowSize 

type WindowSize struct {
	// contains filtered or unexported fields
}

func NewEmptyWindowSize 

func NewEmptyWindowSize() WindowSize

func NewWindowSize 

func NewWindowSize(val uint32) WindowSize

func (WindowSize) ArgString 

func (m WindowSize) ArgString() string

func (WindowSize) Flag 

func (WindowSize) Flag() string

func (WindowSize) FlagString 

func (m WindowSize) FlagString() string

func (WindowSize) Get 

func (m WindowSize) Get() uint32

func (WindowSize) IsDefault 

func (m WindowSize) IsDefault() bool

func (WindowSize) IsSet 

func (m WindowSize) IsSet() bool

func (*WindowSize) Set 

func (m *WindowSize) Set(val uint32)

func (*WindowSize) Unset 

func (m *WindowSize) Unset()

type WordSize 

type WordSize struct {
	// contains filtered or unexported fields
}

func NewEmptyWordSize 

func NewEmptyWordSize() WordSize

func NewWordSize 

func NewWordSize(val uint32) WordSize

func (WordSize) ArgString 

func (b WordSize) ArgString() string

func (WordSize) Flag 

func (b WordSize) Flag() string

func (WordSize) FlagString 

func (b WordSize) FlagString() string

func (WordSize) Get 

func (b WordSize) Get() uint32

func (WordSize) IsDefault 

func (b WordSize) IsDefault() bool

func (WordSize) IsSet 

func (b WordSize) IsSet() bool

func (*WordSize) Set 

func (b *WordSize) Set(val uint32)

func (*WordSize) Unset 

func (b *WordSize) Unset()

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