README
¶
convert
import "github.com/plantimals/2vcf/convert"
Overview
Package convert handles the merging of microarray genotype calls with the more detailed information required for a VCF.
Included is a VCF with the union of the loci included
in 23andme and ancestry.com microarray chips. The
convert package intersects this VCF with the sites in
the raw data by marker name, the rsid.
Index
Package files
type Client
type Client struct {
// contains filtered or unexported fields
}
func Newclient
func Newclient(inputFile string, outputFile string) *Client
Newclient returns a basic Client, with default reference path
func NewclientWithRef
func NewclientWithRef(inputFile string, outputFile string, vcfRef string) *Client
NewclientWithRef returns a new Client, containing the specified ref
func (*Client) Convert23AndMe
func (c *Client) Convert23AndMe()
func (*Client) ConvertAncestry
func (c *Client) ConvertAncestry()
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Documentation
¶
Overview ¶
Package convert handles the merging of microarray genotype calls with the more detailed information required for a VCF.
Included is a VCF with the union of the loci included in 23andme and ancestry.com microarray chips. The convert package intersects this VCF with the sites in the raw data by marker name, the `rsid`.
Index ¶
Constants ¶
This section is empty.
Variables ¶
This section is empty.
Functions ¶
This section is empty.
Types ¶
type Client ¶
type Client struct {
// contains filtered or unexported fields
}
func NewclientWithRef ¶
NewclientWithRef returns a new Client, containing the specified ref
func (*Client) Convert23AndMe ¶
func (c *Client) Convert23AndMe()
func (*Client) ConvertAncestry ¶
func (c *Client) ConvertAncestry()
Source Files