dataImportHelpers

Documentation

Overview

Example (ParseBeamLocationHeaders)

Output:

[{777 4 5} {3027 6 7}]|-1|<nil>
[{777 5 6} {3027 7 8}]|4|<nil>
[{777 4 5} {3027 7 8}]|6|<nil>
[]|6|Unexpected count of i/j columns
[]|-1|Expected column image_i, got: PMC_777_MCC_i
[{444 4 5}]|-1|<nil>
[{444 4 5}]|-1|<nil>
[]|-1|Expected column image_j, got: SCLK
[]|-1|Unexpected column header PMC_3027_MCC_i after PMC_777_MCC_i
[]|-1|Unexpected count of i/j columns
[]|-1|Unexpected column: SCLK
[]|-1|Expected column x, got: SCLK

Example (ParseBeamLocationRow)

Output:

33,{1.1 1.2 1.3 0 map[20:{55.1 55.2}]}|<nil>
33,{1.1 1.2 1.3 0 map[320:{8.1 8.2} 777:{55.1 55.2}]}|<nil>
33,{1.1 1.2 1.3 0.983 map[320:{8.1 8.2} 777:{55.1 55.2}]}|<nil>

Example (ParseBeamLocations)

Output:

map[33:{1.1 1.2 1.3 0 map[222:{55.1 55.2}]}]|<nil>
map[33:{31.1 31.2 31.3 0 map[22:{355.1 355.2} 62:{3121.4 3121.5}]} 66:{91.1 91.2 91.3 0 map[22:{955.1 955.2} 62:{9121.4 9121.5}]}]|<nil>
map[33:{31.1 31.2 31.3 1.03 map[22:{355.1 355.2} 62:{3121.4 3121.5}]} 66:{91.1 91.2 91.3 0.99 map[22:{955.1 955.2} 62:{9121.4 9121.5}]}]|<nil>
map[33:{31.1 31.2 31.3 1.03 map[22:{355.1 355.2} 62:{3121.4 3121.5}]} 66:{91.1 91.2 91.3 0.99 map[22:{955.1 955.2} 62:{9121.4 9121.5}]}]|<nil>

Example (SplitColumnHeader)

Output:

333,corr,i|<nil>
777,MCC,j|<nil>
0,,|Unexpected column: PMC_777_MC_j
0,,|Unexpected column: PMC_bob_MCC_j
0,,|Unexpected column: PMC_777_MCC_k
0,,|Unexpected column: PMc_777_MCC_j
0,,|Unexpected column: nan

Index

• func ReadBeamLocationsFile(beamPath string, expectMultipleIJ bool, mainImagePMC int32, ...) (dataConvertModels.BeamLocationByPMC, error)
• func ReadCSV(filePath string, headerIdx int, sep rune, jobLog logger.ILogger) ([][]string, error)

Examples

• Package (ParseBeamLocationHeaders)
• Package (ParseBeamLocationRow)
• Package (ParseBeamLocations)
• Package (SplitColumnHeader)

Functions

func ReadBeamLocationsFile

func ReadBeamLocationsFile(beamPath string, expectMultipleIJ bool, mainImagePMC int32, ignoreColumns []string, jobLog logger.ILogger) (dataConvertModels.BeamLocationByPMC, error)

ReadBeamLocationsFile - Reads beam location CSV. Old style (expectMultipleIJ=false) or new multi-image IJ coord CSVs.

func ReadCSV

func ReadCSV(filePath string, headerIdx int, sep rune, jobLog logger.ILogger) ([][]string, error)