dataImportHelpers

package
v4.30.0 Latest Latest
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 Go to latest Published: Aug 26, 2024 License: Apache-2.0 Imports: 11 Imported by: 0

Documentation

Overview

Example (ParseBeamLocationHeaders) 
cols, geom_corr, err := parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "PMC_777_MCC_i", "PMC_777_MCC_j", "PMC_3027_MCC_i", "PMC_3027_MCC_j"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

// With optional geom_corr
cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "geom_corr", "PMC_777_MCC_i", "PMC_777_MCC_j", "PMC_3027_MCC_i", "PMC_3027_MCC_j"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

// With optional geom_corr mixed amongst ijs (We used to expect this to fail, but parser now accepts geom_corr anywhere)
cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "PMC_777_MCC_i", "PMC_777_MCC_j", "geom_corr", "PMC_3027_MCC_i", "PMC_3027_MCC_j"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

// With optional geom_corr and another mixed amongst ijs (SHOULD FAIL)
cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "PMC_777_MCC_i", "PMC_777_MCC_j", "geom_corr", "PMC_3027_MCC_i", "SCLK", "PMC_3027_MCC_j"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "PMC_777_MCC_i", "PMC_777_MCC_j", "PMC_3027_MCC_i", "PMC_3027_MCC_j"}, false, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "image_i", "image_j"}, false, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "image_i", "image_j", "SCLK"}, false, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "image_i", "SCLK", "image_j"}, false, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "PMC_777_MCC_i", "PMC_3027_MCC_i", "PMC_777_MCC_j", "PMC_3027_MCC_j"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "PMC_777_MCC_i", "PMC_777_MCC_j", "PMC_3027_MCC_i"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "x", "y", "z", "SCLK", "PMC_777_MCC_i", "PMC_777_MCC_j", "PMC_3027_MCC_i"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

cols, geom_corr, err = parseBeamLocationHeaders([]string{"PMC", "SCLK", "y", "z", "PMC_777_MCC_i", "PMC_777_MCC_j"}, true, 444, []string{})
fmt.Printf("%v|%v|%v\n", cols, geom_corr, err)

Output:

[{777 4 5} {3027 6 7}]|-1|<nil>
[{777 5 6} {3027 7 8}]|4|<nil>
[{777 4 5} {3027 7 8}]|6|<nil>
[]|6|Unexpected count of i/j columns
[]|-1|Expected column image_i, got: PMC_777_MCC_i
[{444 4 5}]|-1|<nil>
[{444 4 5}]|-1|<nil>
[]|-1|Expected column image_j, got: SCLK
[]|-1|Unexpected column header PMC_3027_MCC_i after PMC_777_MCC_i
[]|-1|Unexpected count of i/j columns
[]|-1|Unexpected column: SCLK
[]|-1|Expected column x, got: SCLK
Example (ParseBeamLocationRow) 
pmc, beam, err := parseBeamLocationRow([]string{"33", "1.1", "1.2", "1.3", "55.1", "55.2"}, []pmcColIdxs{{20, 4, 5}}, -1)
fmt.Printf("%v,%v|%v\n", pmc, beam, err)

pmc, beam, err = parseBeamLocationRow([]string{"33", "1.1", "1.2", "1.3", "55.1", "55.2", "444", "8.1", "lala", "8.2"}, []pmcColIdxs{{777, 4, 5}, {320, 7, 9}}, -1)
fmt.Printf("%v,%v|%v\n", pmc, beam, err)

pmc, beam, err = parseBeamLocationRow([]string{"33", "1.1", "1.2", "1.3", "0.983", "55.1", "55.2", "444", "8.1", "lala", "8.2"}, []pmcColIdxs{{777, 5, 6}, {320, 8, 10}}, 4)
fmt.Printf("%v,%v|%v\n", pmc, beam, err)

Output:

33,{1.1 1.2 1.3 0 map[20:{55.1 55.2}]}|<nil>
33,{1.1 1.2 1.3 0 map[320:{8.1 8.2} 777:{55.1 55.2}]}|<nil>
33,{1.1 1.2 1.3 0.983 map[320:{8.1 8.2} 777:{55.1 55.2}]}|<nil>
Example (ParseBeamLocations) 
data, err := parseBeamLocations([][]string{[]string{"PMC", "x", "y", "z", "image_i", "image_j"}, []string{"33", "1.1", "1.2", "1.3", "55.1", "55.2"}}, false, 222, []string{})
fmt.Printf("%v|%v\n", data, err)

data, err = parseBeamLocations([][]string{
	[]string{"PMC", "x", "y", "z", "PMC_22_MCC_i", "PMC_22_MCC_j", "PMC_62_MCC_i", "PMC_62_MCC_j"},
	[]string{"33", "31.1", "31.2", "31.3", "355.1", "355.2", "3121.4", "3121.5"},
	[]string{"66", "91.1", "91.2", "91.3", "955.1", "955.2", "9121.4", "9121.5"},
}, true, 333, []string{})
fmt.Printf("%v|%v\n", data, err)

data, err = parseBeamLocations([][]string{
	[]string{"PMC", "x", "y", "z", "geom_corr", "PMC_22_MCC_i", "PMC_22_MCC_j", "PMC_62_MCC_i", "PMC_62_MCC_j"},
	[]string{"33", "31.1", "31.2", "31.3", "1.03", "355.1", "355.2", "3121.4", "3121.5"},
	[]string{"66", "91.1", "91.2", "91.3", "0.99", "955.1", "955.2", "9121.4", "9121.5"},
}, true, 333, []string{})
fmt.Printf("%v|%v\n", data, err)

data, err = parseBeamLocations([][]string{
	[]string{"PMC", "x", "y", "z", "PMC_22_MCC_i", "PMC_22_MCC_j", "geom_corr", "PMC_62_MCC_i", "PMC_62_MCC_j"},
	[]string{"33", "31.1", "31.2", "31.3", "355.1", "355.2", "1.03", "3121.4", "3121.5"},
	[]string{"66", "91.1", "91.2", "91.3", "955.1", "955.2", "0.99", "9121.4", "9121.5"},
}, true, 333, []string{})
fmt.Printf("%v|%v\n", data, err)

Output:

map[33:{1.1 1.2 1.3 0 map[222:{55.1 55.2}]}]|<nil>
map[33:{31.1 31.2 31.3 0 map[22:{355.1 355.2} 62:{3121.4 3121.5}]} 66:{91.1 91.2 91.3 0 map[22:{955.1 955.2} 62:{9121.4 9121.5}]}]|<nil>
map[33:{31.1 31.2 31.3 1.03 map[22:{355.1 355.2} 62:{3121.4 3121.5}]} 66:{91.1 91.2 91.3 0.99 map[22:{955.1 955.2} 62:{9121.4 9121.5}]}]|<nil>
map[33:{31.1 31.2 31.3 1.03 map[22:{355.1 355.2} 62:{3121.4 3121.5}]} 66:{91.1 91.2 91.3 0.99 map[22:{955.1 955.2} 62:{9121.4 9121.5}]}]|<nil>
Example (SplitColumnHeader) 
pmc, data, ij, err := splitColumnHeader("PMC_333_corr_i")
fmt.Printf("%v,%v,%v|%v\n", pmc, data, ij, err)

pmc, data, ij, err = splitColumnHeader("PMC_777_MCC_j")
fmt.Printf("%v,%v,%v|%v\n", pmc, data, ij, err)

pmc, data, ij, err = splitColumnHeader("PMC_777_MC_j")
fmt.Printf("%v,%v,%v|%v\n", pmc, data, ij, err)

pmc, data, ij, err = splitColumnHeader("PMC_bob_MCC_j")
fmt.Printf("%v,%v,%v|%v\n", pmc, data, ij, err)

pmc, data, ij, err = splitColumnHeader("PMC_777_MCC_k")
fmt.Printf("%v,%v,%v|%v\n", pmc, data, ij, err)

pmc, data, ij, err = splitColumnHeader("PMc_777_MCC_j")
fmt.Printf("%v,%v,%v|%v\n", pmc, data, ij, err)

pmc, data, ij, err = splitColumnHeader("nan")
fmt.Printf("%v,%v,%v|%v\n", pmc, data, ij, err)

Output:

333,corr,i|<nil>
777,MCC,j|<nil>
0,,|Unexpected column: PMC_777_MC_j
0,,|Unexpected column: PMC_bob_MCC_j
0,,|Unexpected column: PMC_777_MCC_k
0,,|Unexpected column: PMc_777_MCC_j
0,,|Unexpected column: nan

Index

Examples

Constants

This section is empty.

Variables

This section is empty.

Functions

func ReadBeamLocationsFile 

func ReadBeamLocationsFile(path string, expectMultipleIJ bool, mainImagePMC int32, ignoreColumns []string, jobLog logger.ILogger) (dataConvertModels.BeamLocationByPMC, error)

ReadBeamLocationsFile - Reads beam location CSV. Old style (expectMultipleIJ=false) or new multi-image IJ coord CSVs.

func ReadCSV 

func ReadCSV(filePath string, headerIdx int, sep rune, jobLog logger.ILogger) ([][]string, error)

Types

This section is empty.

Source Files

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