complexity

Documentation

Overview

Package complexity provides routines for evaluating sequence complexity.

Index

• func Entropic(s seq.Sequence, start, end int) (ce float64, err error)
• func WF(s seq.Sequence, start, end int) (cwf float64, err error)
• func Z(s seq.Sequence, start, end int) (cz float64, err error)

Functions

func Entropic

func Entropic(s seq.Sequence, start, end int) (ce float64, err error)

Entropic returns the entropic complexity of a segment of s defined by start and end.

func WF

func WF(s seq.Sequence, start, end int) (cwf float64, err error)

WF returns the Wootton and Federhen complexity of a segment of s defined by start and end.

func Z

func Z(s seq.Sequence, start, end int) (cz float64, err error)

Z returns the zlib compression estimate of complexity of a segment of s defined by start and end.