rnnr

command module
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Published: May 20, 2020 License: GPL-3.0 Imports: 1 Imported by: 0

README

Distributed task executor for genomics research

RNNR is a bioinformatics task processing system for distributed computing environments. It was designed to work with a workflow management system, such as Cromwell and Nextflow, through the Task Execution Service (TES) API. The workflow manager submits tasks to RNNR that distributes the processing load among computational nodes connected in a local network. The system is composed of the master instance and one or more worker instances. A distributed file system (NFS for example) is required.

Full documentation at https://bcblab.org/rnnr.

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Directories

Path Synopsis
Package client implements Task Execution Service API for requesting servers.
Package client implements Task Execution Service API for requesting servers.
Package cmd implements command line commands.
Package cmd implements command line commands.
Package master implements RNNR master logic to manage tasks and worker nodes.
Package master implements RNNR master logic to manage tasks and worker nodes.
Package worker implements RNNR worker logic.
Package worker implements RNNR worker logic.

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