rnnr

README

Distributed task executor for genomics research

Getting started

Run RNNR master server. Requires MongoDB server.

rnnr master

Endpoint is http://localhost:8080/tasks

Run RNNR worker server. Requires Docker server.

rnnr worker

Add worker node.

rnnr add localhost

Run Cromwell with RNNR. Cromwell utilizes TES backend to submit jobs. For more information see https://cromwell.readthedocs.io/en/stable/backends/TES/. Get latest Cromwell at https://github.com/broadinstitute/cromwell/releases.

java -Dconfig.file=examples/cromwell.conf -jar cromwell-49.jar run examples/hello.wdl

Development

Generate Go code from ProtoBuffer file

protoc -I pb --go_out=plugins=grpc:pb pb/worker.proto 

Build Docker image and publish to Docker Hub

docker build -t welliton/rnnr:<version> .
docker push