mongo

Documentation

Index

• type DB
  • func Connect(uri string, database string) (*DB, error)
  • func (db *DB) Remove(datasetID string, assemblyID string) error
  • func (db *DB) Save(v *variant.Variant) error
  • func (db *DB) Search(i *search.Input) (*search.Response, error)

Types

type DB

type DB struct {
	// contains filtered or unexported fields
}

DB extends Mongo client to address business model (genomic variants)

func Connect

func Connect(uri string, database string) (*DB, error)

Connect creates connection with MongoDB

func (*DB) Remove

func (db *DB) Remove(datasetID string, assemblyID string) error

Remove removes variants from database given a dataset ID and/or assembly ID. If both are zero value them it deletes all variants.

func (*DB) Save

func (db *DB) Save(v *variant.Variant) error

Save stores variant to Mongo database

func (*DB) Search

func (db *DB) Search(i *search.Input) (*search.Response, error)

Search is the main method to search for variants.