barcoding

package
v0.0.0-...-f005bc5 Latest Latest
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Published: Dec 14, 2024 License: MIT Imports: 8 Imported by: 0

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Variables

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var DefaultBarcodes = DualBarcodesToPrimerSet([]DualBarcode{
	{"A1", "GGAAAAGCAAAACTAAAACG", "GAACCACAACCTTAACCTGA"},
	{"C1", "GAAGGACAAGGTTAAGGTGA", "GAACCACAACCTTAACCTGA"},
	{"E1", "GGTGAAGGTCAAGGGTAAGG", "GAACCACAACCTTAACCTGA"},
	{"G1", "TAAGGGGAAGGGCAAGGCTA", "GAACCACAACCTTAACCTGA"},
	{"I1", "GGCTAAGGCGAAGGCCAAGC", "GAACCACAACCTTAACCTGA"},
	{"K1", "CAAGCATAAGCAGAAGCACA", "GAACCACAACCTTAACCTGA"},
	{"M1", "GCACAAGCTTAAGCTGAAGC", "GAACCACAACCTTAACCTGA"},
	{"O1", "GAAGCTCAAGCGTAAGCGGA", "GAACCACAACCTTAACCTGA"},
	{"A2", "GGAAAAGCAAAACTAAAACG", "CCTGAACCTCAACCGTAACC"},
	{"C2", "GAAGGACAAGGTTAAGGTGA", "CCTGAACCTCAACCGTAACC"},
	{"E2", "GGTGAAGGTCAAGGGTAAGG", "CCTGAACCTCAACCGTAACC"},
	{"G2", "TAAGGGGAAGGGCAAGGCTA", "CCTGAACCTCAACCGTAACC"},
	{"I2", "GGCTAAGGCGAAGGCCAAGC", "CCTGAACCTCAACCGTAACC"},
	{"K2", "CAAGCATAAGCAGAAGCACA", "CCTGAACCTCAACCGTAACC"},
	{"M2", "GCACAAGCTTAAGCTGAAGC", "CCTGAACCTCAACCGTAACC"},
	{"O2", "GAAGCTCAAGCGTAAGCGGA", "CCTGAACCTCAACCGTAACC"},
	{"A3", "GGAAAAGCAAAACTAAAACG", "TAACCGGAACCGCAACCCTA"},
	{"C3", "GAAGGACAAGGTTAAGGTGA", "TAACCGGAACCGCAACCCTA"},
	{"E3", "GGTGAAGGTCAAGGGTAAGG", "TAACCGGAACCGCAACCCTA"},
	{"G3", "TAAGGGGAAGGGCAAGGCTA", "TAACCGGAACCGCAACCCTA"},
	{"I3", "GGCTAAGGCGAAGGCCAAGC", "TAACCGGAACCGCAACCCTA"},
	{"K3", "CAAGCATAAGCAGAAGCACA", "TAACCGGAACCGCAACCCTA"},
	{"M3", "GCACAAGCTTAAGCTGAAGC", "TAACCGGAACCGCAACCCTA"},
	{"O3", "GAAGCTCAAGCGTAAGCGGA", "TAACCGGAACCGCAACCCTA"},
	{"A4", "GGAAAAGCAAAACTAAAACG", "CCCTAACCCGAACCCCATAT"},
	{"C4", "GAAGGACAAGGTTAAGGTGA", "CCCTAACCCGAACCCCATAT"},
	{"E4", "GGTGAAGGTCAAGGGTAAGG", "CCCTAACCCGAACCCCATAT"},
	{"G4", "TAAGGGGAAGGGCAAGGCTA", "CCCTAACCCGAACCCCATAT"},
	{"I4", "GGCTAAGGCGAAGGCCAAGC", "CCCTAACCCGAACCCCATAT"},
	{"K4", "CAAGCATAAGCAGAAGCACA", "CCCTAACCCGAACCCCATAT"},
	{"M4", "GCACAAGCTTAAGCTGAAGC", "CCCTAACCCGAACCCCATAT"},
	{"O4", "GAAGCTCAAGCGTAAGCGGA", "CCCTAACCCGAACCCCATAT"},
	{"A5", "GGAAAAGCAAAACTAAAACG", "GGATATGCATATCTATATCG"},
	{"C5", "GAAGGACAAGGTTAAGGTGA", "GGATATGCATATCTATATCG"},
	{"E5", "GGTGAAGGTCAAGGGTAAGG", "GGATATGCATATCTATATCG"},
	{"G5", "TAAGGGGAAGGGCAAGGCTA", "GGATATGCATATCTATATCG"},
	{"I5", "GGCTAAGGCGAAGGCCAAGC", "GGATATGCATATCTATATCG"},
	{"K5", "CAAGCATAAGCAGAAGCACA", "GGATATGCATATCTATATCG"},
	{"M5", "GCACAAGCTTAAGCTGAAGC", "GGATATGCATATCTATATCG"},
	{"O5", "GAAGCTCAAGCGTAAGCGGA", "GGATATGCATATCTATATCG"},
	{"A6", "GGAAAAGCAAAACTAAAACG", "CGTATGCGGATGCGCATGCC"},
	{"C6", "GAAGGACAAGGTTAAGGTGA", "CGTATGCGGATGCGCATGCC"},
	{"E6", "GGTGAAGGTCAAGGGTAAGG", "CGTATGCGGATGCGCATGCC"},
	{"G6", "TAAGGGGAAGGGCAAGGCTA", "CGTATGCGGATGCGCATGCC"},
	{"I6", "GGCTAAGGCGAAGGCCAAGC", "CGTATGCGGATGCGCATGCC"},
	{"K6", "CAAGCATAAGCAGAAGCACA", "CGTATGCGGATGCGCATGCC"},
	{"M6", "GCACAAGCTTAAGCTGAAGC", "CGTATGCGGATGCGCATGCC"},
	{"O6", "GAAGCTCAAGCGTAAGCGGA", "CGTATGCGGATGCGCATGCC"},
	{"A7", "GGAAAAGCAAAACTAAAACG", "ATGCCTATGCCGATGCCCAT"},
	{"C7", "GAAGGACAAGGTTAAGGTGA", "ATGCCTATGCCGATGCCCAT"},
	{"E7", "GGTGAAGGTCAAGGGTAAGG", "ATGCCTATGCCGATGCCCAT"},
	{"G7", "TAAGGGGAAGGGCAAGGCTA", "ATGCCTATGCCGATGCCCAT"},
	{"I7", "GGCTAAGGCGAAGGCCAAGC", "ATGCCTATGCCGATGCCCAT"},
	{"K7", "CAAGCATAAGCAGAAGCACA", "ATGCCTATGCCGATGCCCAT"},
	{"M7", "GCACAAGCTTAAGCTGAAGC", "ATGCCTATGCCGATGCCCAT"},
	{"O7", "GAAGCTCAAGCGTAAGCGGA", "ATGCCTATGCCGATGCCCAT"},
	{"A8", "GGAAAAGCAAAACTAAAACG", "CCCATCATCAGTATCAGGAT"},
	{"C8", "GAAGGACAAGGTTAAGGTGA", "CCCATCATCAGTATCAGGAT"},
	{"E8", "GGTGAAGGTCAAGGGTAAGG", "CCCATCATCAGTATCAGGAT"},
	{"G8", "TAAGGGGAAGGGCAAGGCTA", "CCCATCATCAGTATCAGGAT"},
	{"I8", "GGCTAAGGCGAAGGCCAAGC", "CCCATCATCAGTATCAGGAT"},
	{"K8", "CAAGCATAAGCAGAAGCACA", "CCCATCATCAGTATCAGGAT"},
	{"M8", "GCACAAGCTTAAGCTGAAGC", "CCCATCATCAGTATCAGGAT"},
	{"O8", "GAAGCTCAAGCGTAAGCGGA", "CCCATCATCAGTATCAGGAT"},
	{"A9", "GGAAAAGCAAAACTAAAACG", "AGGATCAGCATCACTATCAC"},
	{"C9", "GAAGGACAAGGTTAAGGTGA", "AGGATCAGCATCACTATCAC"},
	{"E9", "GGTGAAGGTCAAGGGTAAGG", "AGGATCAGCATCACTATCAC"},
	{"G9", "TAAGGGGAAGGGCAAGGCTA", "AGGATCAGCATCACTATCAC"},
	{"I9", "GGCTAAGGCGAAGGCCAAGC", "AGGATCAGCATCACTATCAC"},
	{"K9", "CAAGCATAAGCAGAAGCACA", "AGGATCAGCATCACTATCAC"},
	{"M9", "GCACAAGCTTAAGCTGAAGC", "AGGATCAGCATCACTATCAC"},
	{"O9", "GAAGCTCAAGCGTAAGCGGA", "AGGATCAGCATCACTATCAC"},
	{"A10", "GGAAAAGCAAAACTAAAACG", "ATCACGATCACCATCTAGAT"},
	{"C10", "GAAGGACAAGGTTAAGGTGA", "ATCACGATCACCATCTAGAT"},
	{"E10", "GGTGAAGGTCAAGGGTAAGG", "ATCACGATCACCATCTAGAT"},
	{"G10", "TAAGGGGAAGGGCAAGGCTA", "ATCACGATCACCATCTAGAT"},
	{"I10", "GGCTAAGGCGAAGGCCAAGC", "ATCACGATCACCATCTAGAT"},
	{"K10", "CAAGCATAAGCAGAAGCACA", "ATCACGATCACCATCTAGAT"},
	{"M10", "GCACAAGCTTAAGCTGAAGC", "ATCACGATCACCATCTAGAT"},
	{"O10", "GAAGCTCAAGCGTAAGCGGA", "ATCACGATCACCATCTAGAT"},
	{"A11", "GGAAAAGCAAAACTAAAACG", "TCTTGATCTTCATCTGTATC"},
	{"C11", "GAAGGACAAGGTTAAGGTGA", "TCTTGATCTTCATCTGTATC"},
	{"E11", "GGTGAAGGTCAAGGGTAAGG", "TCTTGATCTTCATCTGTATC"},
	{"G11", "TAAGGGGAAGGGCAAGGCTA", "TCTTGATCTTCATCTGTATC"},
	{"I11", "GGCTAAGGCGAAGGCCAAGC", "TCTTGATCTTCATCTGTATC"},
	{"K11", "CAAGCATAAGCAGAAGCACA", "TCTTGATCTTCATCTGTATC"},
	{"M11", "GCACAAGCTTAAGCTGAAGC", "TCTTGATCTTCATCTGTATC"},
	{"O11", "GAAGCTCAAGCGTAAGCGGA", "TCTTGATCTTCATCTGTATC"},
	{"A12", "GGAAAAGCAAAACTAAAACG", "CCAGACACAGACTTAGACTG"},
	{"C12", "GAAGGACAAGGTTAAGGTGA", "CCAGACACAGACTTAGACTG"},
	{"E12", "GGTGAAGGTCAAGGGTAAGG", "CCAGACACAGACTTAGACTG"},
	{"G12", "TAAGGGGAAGGGCAAGGCTA", "CCAGACACAGACTTAGACTG"},
	{"I12", "GGCTAAGGCGAAGGCCAAGC", "CCAGACACAGACTTAGACTG"},
	{"K12", "CAAGCATAAGCAGAAGCACA", "CCAGACACAGACTTAGACTG"},
	{"M12", "GCACAAGCTTAAGCTGAAGC", "CCAGACACAGACTTAGACTG"},
	{"O12", "GAAGCTCAAGCGTAAGCGGA", "CCAGACACAGACTTAGACTG"},
	{"A13", "GGAAAAGCAAAACTAAAACG", "GACTGAGACTCAGACGTAGA"},
	{"C13", "GAAGGACAAGGTTAAGGTGA", "GACTGAGACTCAGACGTAGA"},
	{"E13", "GGTGAAGGTCAAGGGTAAGG", "GACTGAGACTCAGACGTAGA"},
	{"G13", "TAAGGGGAAGGGCAAGGCTA", "GACTGAGACTCAGACGTAGA"},
	{"I13", "GGCTAAGGCGAAGGCCAAGC", "GACTGAGACTCAGACGTAGA"},
	{"K13", "CAAGCATAAGCAGAAGCACA", "GACTGAGACTCAGACGTAGA"},
	{"M13", "GCACAAGCTTAAGCTGAAGC", "GACTGAGACTCAGACGTAGA"},
	{"O13", "GAAGCTCAAGCGTAAGCGGA", "GACTGAGACTCAGACGTAGA"},
	{"A14", "GGAAAAGCAAAACTAAAACG", "GTAGACGGAGACGCAGACCT"},
	{"C14", "GAAGGACAAGGTTAAGGTGA", "GTAGACGGAGACGCAGACCT"},
	{"E14", "GGTGAAGGTCAAGGGTAAGG", "GTAGACGGAGACGCAGACCT"},
	{"G14", "TAAGGGGAAGGGCAAGGCTA", "GTAGACGGAGACGCAGACCT"},
	{"I14", "GGCTAAGGCGAAGGCCAAGC", "GTAGACGGAGACGCAGACCT"},
	{"K14", "CAAGCATAAGCAGAAGCACA", "GTAGACGGAGACGCAGACCT"},
	{"M14", "GCACAAGCTTAAGCTGAAGC", "GTAGACGGAGACGCAGACCT"},
	{"O14", "GAAGCTCAAGCGTAAGCGGA", "GTAGACGGAGACGCAGACCT"},
	{"A15", "GGAAAAGCAAAACTAAAACG", "GACCTAGACCGAGACCCAGT"},
	{"C15", "GAAGGACAAGGTTAAGGTGA", "GACCTAGACCGAGACCCAGT"},
	{"E15", "GGTGAAGGTCAAGGGTAAGG", "GACCTAGACCGAGACCCAGT"},
	{"G15", "TAAGGGGAAGGGCAAGGCTA", "GACCTAGACCGAGACCCAGT"},
	{"I15", "GGCTAAGGCGAAGGCCAAGC", "GACCTAGACCGAGACCCAGT"},
	{"K15", "CAAGCATAAGCAGAAGCACA", "GACCTAGACCGAGACCCAGT"},
	{"M15", "GCACAAGCTTAAGCTGAAGC", "GACCTAGACCGAGACCCAGT"},
	{"O15", "GAAGCTCAAGCGTAAGCGGA", "GACCTAGACCGAGACCCAGT"},
	{"A16", "GGAAAAGCAAAACTAAAACG", "CCAGTAGTAGGAGTAGCAGT"},
	{"C16", "GAAGGACAAGGTTAAGGTGA", "CCAGTAGTAGGAGTAGCAGT"},
	{"E16", "GGTGAAGGTCAAGGGTAAGG", "CCAGTAGTAGGAGTAGCAGT"},
	{"G16", "TAAGGGGAAGGGCAAGGCTA", "CCAGTAGTAGGAGTAGCAGT"},
	{"I16", "GGCTAAGGCGAAGGCCAAGC", "CCAGTAGTAGGAGTAGCAGT"},
	{"K16", "CAAGCATAAGCAGAAGCACA", "CCAGTAGTAGGAGTAGCAGT"},
	{"M16", "GCACAAGCTTAAGCTGAAGC", "CCAGTAGTAGGAGTAGCAGT"},
	{"O16", "GAAGCTCAAGCGTAAGCGGA", "CCAGTAGTAGGAGTAGCAGT"},
	{"A17", "GGAAAAGCAAAACTAAAACG", "GCAGTACTAGTACGAGTACC"},
	{"C17", "GAAGGACAAGGTTAAGGTGA", "GCAGTACTAGTACGAGTACC"},
	{"E17", "GGTGAAGGTCAAGGGTAAGG", "GCAGTACTAGTACGAGTACC"},
	{"G17", "TAAGGGGAAGGGCAAGGCTA", "GCAGTACTAGTACGAGTACC"},
	{"I17", "GGCTAAGGCGAAGGCCAAGC", "GCAGTACTAGTACGAGTACC"},
	{"K17", "CAAGCATAAGCAGAAGCACA", "GCAGTACTAGTACGAGTACC"},
	{"M17", "GCACAAGCTTAAGCTGAAGC", "GCAGTACTAGTACGAGTACC"},
	{"O17", "GAAGCTCAAGCGTAAGCGGA", "GCAGTACTAGTACGAGTACC"},
	{"A18", "GGAAAAGCAAAACTAAAACG", "GTACCAGTTACAGTTTTAGT"},
	{"C18", "GAAGGACAAGGTTAAGGTGA", "GTACCAGTTACAGTTTTAGT"},
	{"E18", "GGTGAAGGTCAAGGGTAAGG", "GTACCAGTTACAGTTTTAGT"},
	{"G18", "TAAGGGGAAGGGCAAGGCTA", "GTACCAGTTACAGTTTTAGT"},
	{"I18", "GGCTAAGGCGAAGGCCAAGC", "GTACCAGTTACAGTTTTAGT"},
	{"K18", "CAAGCATAAGCAGAAGCACA", "GTACCAGTTACAGTTTTAGT"},
	{"M18", "GCACAAGCTTAAGCTGAAGC", "GTACCAGTTACAGTTTTAGT"},
	{"O18", "GAAGCTCAAGCGTAAGCGGA", "GTACCAGTTACAGTTTTAGT"},
	{"A19", "GGAAAAGCAAAACTAAAACG", "AGTTTGAGTTTCAGTTGTAG"},
	{"C19", "GAAGGACAAGGTTAAGGTGA", "AGTTTGAGTTTCAGTTGTAG"},
	{"E19", "GGTGAAGGTCAAGGGTAAGG", "AGTTTGAGTTTCAGTTGTAG"},
	{"G19", "TAAGGGGAAGGGCAAGGCTA", "AGTTTGAGTTTCAGTTGTAG"},
	{"I19", "GGCTAAGGCGAAGGCCAAGC", "AGTTTGAGTTTCAGTTGTAG"},
	{"K19", "CAAGCATAAGCAGAAGCACA", "AGTTTGAGTTTCAGTTGTAG"},
	{"M19", "GCACAAGCTTAAGCTGAAGC", "AGTTTGAGTTTCAGTTGTAG"},
	{"O19", "GAAGCTCAAGCGTAAGCGGA", "AGTTTGAGTTTCAGTTGTAG"},
	{"A20", "GGAAAAGCAAAACTAAAACG", "GTTCCAGTGACAGTGTTAGT"},
	{"C20", "GAAGGACAAGGTTAAGGTGA", "GTTCCAGTGACAGTGTTAGT"},
	{"E20", "GGTGAAGGTCAAGGGTAAGG", "GTTCCAGTGACAGTGTTAGT"},
	{"G20", "TAAGGGGAAGGGCAAGGCTA", "GTTCCAGTGACAGTGTTAGT"},
	{"I20", "GGCTAAGGCGAAGGCCAAGC", "GTTCCAGTGACAGTGTTAGT"},
	{"K20", "CAAGCATAAGCAGAAGCACA", "GTTCCAGTGACAGTGTTAGT"},
	{"M20", "GCACAAGCTTAAGCTGAAGC", "GTTCCAGTGACAGTGTTAGT"},
	{"O20", "GAAGCTCAAGCGTAAGCGGA", "GTTCCAGTGACAGTGTTAGT"},
	{"A21", "GGAAAAGCAAAACTAAAACG", "TTAGTGTGAGTGTCAGTGGT"},
	{"C21", "GAAGGACAAGGTTAAGGTGA", "TTAGTGTGAGTGTCAGTGGT"},
	{"E21", "GGTGAAGGTCAAGGGTAAGG", "TTAGTGTGAGTGTCAGTGGT"},
	{"G21", "TAAGGGGAAGGGCAAGGCTA", "TTAGTGTGAGTGTCAGTGGT"},
	{"I21", "GGCTAAGGCGAAGGCCAAGC", "TTAGTGTGAGTGTCAGTGGT"},
	{"K21", "CAAGCATAAGCAGAAGCACA", "TTAGTGTGAGTGTCAGTGGT"},
	{"M21", "GCACAAGCTTAAGCTGAAGC", "TTAGTGTGAGTGTCAGTGGT"},
	{"O21", "GAAGCTCAAGCGTAAGCGGA", "TTAGTGTGAGTGTCAGTGGT"},
	{"A22", "GGAAAAGCAAAACTAAAACG", "GTGGTAGTGGGAGTGGCAGT"},
	{"C22", "GAAGGACAAGGTTAAGGTGA", "GTGGTAGTGGGAGTGGCAGT"},
	{"E22", "GGTGAAGGTCAAGGGTAAGG", "GTGGTAGTGGGAGTGGCAGT"},
	{"G22", "TAAGGGGAAGGGCAAGGCTA", "GTGGTAGTGGGAGTGGCAGT"},
	{"I22", "GGCTAAGGCGAAGGCCAAGC", "GTGGTAGTGGGAGTGGCAGT"},
	{"K22", "CAAGCATAAGCAGAAGCACA", "GTGGTAGTGGGAGTGGCAGT"},
	{"M22", "GCACAAGCTTAAGCTGAAGC", "GTGGTAGTGGGAGTGGCAGT"},
	{"O22", "GAAGCTCAAGCGTAAGCGGA", "GTGGTAGTGGGAGTGGCAGT"},
	{"A23", "GGAAAAGCAAAACTAAAACG", "GCAGTGCTAGTGCGAGTGCC"},
	{"C23", "GAAGGACAAGGTTAAGGTGA", "GCAGTGCTAGTGCGAGTGCC"},
	{"E23", "GGTGAAGGTCAAGGGTAAGG", "GCAGTGCTAGTGCGAGTGCC"},
	{"G23", "TAAGGGGAAGGGCAAGGCTA", "GCAGTGCTAGTGCGAGTGCC"},
	{"I23", "GGCTAAGGCGAAGGCCAAGC", "GCAGTGCTAGTGCGAGTGCC"},
	{"K23", "CAAGCATAAGCAGAAGCACA", "GCAGTGCTAGTGCGAGTGCC"},
	{"M23", "GCACAAGCTTAAGCTGAAGC", "GCAGTGCTAGTGCGAGTGCC"},
	{"O23", "GAAGCTCAAGCGTAAGCGGA", "GCAGTGCTAGTGCGAGTGCC"},
	{"A24", "GGAAAAGCAAAACTAAAACG", "GTGCCAGTCACAGTCTTAGT"},
	{"C24", "GAAGGACAAGGTTAAGGTGA", "GTGCCAGTCACAGTCTTAGT"},
	{"E24", "GGTGAAGGTCAAGGGTAAGG", "GTGCCAGTCACAGTCTTAGT"},
	{"G24", "TAAGGGGAAGGGCAAGGCTA", "GTGCCAGTCACAGTCTTAGT"},
	{"I24", "GGCTAAGGCGAAGGCCAAGC", "GTGCCAGTCACAGTCTTAGT"},
	{"K24", "CAAGCATAAGCAGAAGCACA", "GTGCCAGTCACAGTCTTAGT"},
	{"M24", "GCACAAGCTTAAGCTGAAGC", "GTGCCAGTCACAGTCTTAGT"},
	{"O24", "GAAGCTCAAGCGTAAGCGGA", "GTGCCAGTCACAGTCTTAGT"},
	{"B1", "GCGGAAGCGCAAGCCTAAGC", "GAACCACAACCTTAACCTGA"},
	{"D1", "TAAGCCGAAGCCCAACAACA", "GAACCACAACCTTAACCTGA"},
	{"F1", "ACATGAACATCAACAGTAAC", "GAACCACAACCTTAACCTGA"},
	{"H1", "CGAGAACGACAACGTTAACG", "GAACCACAACCTTAACCTGA"},
	{"J1", "TAACGTGAACGTCAACGGTA", "GAACCACAACCTTAACCTGA"},
	{"L1", "CGGTAACGGGAACGGCAACG", "GAACCACAACCTTAACCTGA"},
	{"N1", "CAACGCTAACGCGAACGCCA", "GAACCACAACCTTAACCTGA"},
	{"P1", "CGCCAACCATAACCAGAACC", "GAACCACAACCTTAACCTGA"},
	{"B2", "GCGGAAGCGCAAGCCTAAGC", "CCTGAACCTCAACCGTAACC"},
	{"D2", "TAAGCCGAAGCCCAACAACA", "CCTGAACCTCAACCGTAACC"},
	{"F2", "ACATGAACATCAACAGTAAC", "CCTGAACCTCAACCGTAACC"},
	{"H2", "CGAGAACGACAACGTTAACG", "CCTGAACCTCAACCGTAACC"},
	{"J2", "TAACGTGAACGTCAACGGTA", "CCTGAACCTCAACCGTAACC"},
	{"L2", "CGGTAACGGGAACGGCAACG", "CCTGAACCTCAACCGTAACC"},
	{"N2", "CAACGCTAACGCGAACGCCA", "CCTGAACCTCAACCGTAACC"},
	{"P2", "CGCCAACCATAACCAGAACC", "CCTGAACCTCAACCGTAACC"},
	{"B3", "GCGGAAGCGCAAGCCTAAGC", "TAACCGGAACCGCAACCCTA"},
	{"D3", "TAAGCCGAAGCCCAACAACA", "TAACCGGAACCGCAACCCTA"},
	{"F3", "ACATGAACATCAACAGTAAC", "TAACCGGAACCGCAACCCTA"},
	{"H3", "CGAGAACGACAACGTTAACG", "TAACCGGAACCGCAACCCTA"},
	{"J3", "TAACGTGAACGTCAACGGTA", "TAACCGGAACCGCAACCCTA"},
	{"L3", "CGGTAACGGGAACGGCAACG", "TAACCGGAACCGCAACCCTA"},
	{"N3", "CAACGCTAACGCGAACGCCA", "TAACCGGAACCGCAACCCTA"},
	{"P3", "CGCCAACCATAACCAGAACC", "TAACCGGAACCGCAACCCTA"},
	{"B4", "GCGGAAGCGCAAGCCTAAGC", "CCCTAACCCGAACCCCATAT"},
	{"D4", "TAAGCCGAAGCCCAACAACA", "CCCTAACCCGAACCCCATAT"},
	{"F4", "ACATGAACATCAACAGTAAC", "CCCTAACCCGAACCCCATAT"},
	{"H4", "CGAGAACGACAACGTTAACG", "CCCTAACCCGAACCCCATAT"},
	{"J4", "TAACGTGAACGTCAACGGTA", "CCCTAACCCGAACCCCATAT"},
	{"L4", "CGGTAACGGGAACGGCAACG", "CCCTAACCCGAACCCCATAT"},
	{"N4", "CAACGCTAACGCGAACGCCA", "CCCTAACCCGAACCCCATAT"},
	{"P4", "CGCCAACCATAACCAGAACC", "CCCTAACCCGAACCCCATAT"},
	{"B5", "GCGGAAGCGCAAGCCTAAGC", "GGATATGCATATCTATATCG"},
	{"D5", "TAAGCCGAAGCCCAACAACA", "GGATATGCATATCTATATCG"},
	{"F5", "ACATGAACATCAACAGTAAC", "GGATATGCATATCTATATCG"},
	{"H5", "CGAGAACGACAACGTTAACG", "GGATATGCATATCTATATCG"},
	{"J5", "TAACGTGAACGTCAACGGTA", "GGATATGCATATCTATATCG"},
	{"L5", "CGGTAACGGGAACGGCAACG", "GGATATGCATATCTATATCG"},
	{"N5", "CAACGCTAACGCGAACGCCA", "GGATATGCATATCTATATCG"},
	{"P5", "CGCCAACCATAACCAGAACC", "GGATATGCATATCTATATCG"},
	{"B6", "GCGGAAGCGCAAGCCTAAGC", "CGTATGCGGATGCGCATGCC"},
	{"D6", "TAAGCCGAAGCCCAACAACA", "CGTATGCGGATGCGCATGCC"},
	{"F6", "ACATGAACATCAACAGTAAC", "CGTATGCGGATGCGCATGCC"},
	{"H6", "CGAGAACGACAACGTTAACG", "CGTATGCGGATGCGCATGCC"},
	{"J6", "TAACGTGAACGTCAACGGTA", "CGTATGCGGATGCGCATGCC"},
	{"L6", "CGGTAACGGGAACGGCAACG", "CGTATGCGGATGCGCATGCC"},
	{"N6", "CAACGCTAACGCGAACGCCA", "CGTATGCGGATGCGCATGCC"},
	{"P6", "CGCCAACCATAACCAGAACC", "CGTATGCGGATGCGCATGCC"},
	{"B7", "GCGGAAGCGCAAGCCTAAGC", "ATGCCTATGCCGATGCCCAT"},
	{"D7", "TAAGCCGAAGCCCAACAACA", "ATGCCTATGCCGATGCCCAT"},
	{"F7", "ACATGAACATCAACAGTAAC", "ATGCCTATGCCGATGCCCAT"},
	{"H7", "CGAGAACGACAACGTTAACG", "ATGCCTATGCCGATGCCCAT"},
	{"J7", "TAACGTGAACGTCAACGGTA", "ATGCCTATGCCGATGCCCAT"},
	{"L7", "CGGTAACGGGAACGGCAACG", "ATGCCTATGCCGATGCCCAT"},
	{"N7", "CAACGCTAACGCGAACGCCA", "ATGCCTATGCCGATGCCCAT"},
	{"P7", "CGCCAACCATAACCAGAACC", "ATGCCTATGCCGATGCCCAT"},
	{"B8", "GCGGAAGCGCAAGCCTAAGC", "CCCATCATCAGTATCAGGAT"},
	{"D8", "TAAGCCGAAGCCCAACAACA", "CCCATCATCAGTATCAGGAT"},
	{"F8", "ACATGAACATCAACAGTAAC", "CCCATCATCAGTATCAGGAT"},
	{"H8", "CGAGAACGACAACGTTAACG", "CCCATCATCAGTATCAGGAT"},
	{"J8", "TAACGTGAACGTCAACGGTA", "CCCATCATCAGTATCAGGAT"},
	{"L8", "CGGTAACGGGAACGGCAACG", "CCCATCATCAGTATCAGGAT"},
	{"N8", "CAACGCTAACGCGAACGCCA", "CCCATCATCAGTATCAGGAT"},
	{"P8", "CGCCAACCATAACCAGAACC", "CCCATCATCAGTATCAGGAT"},
	{"B9", "GCGGAAGCGCAAGCCTAAGC", "AGGATCAGCATCACTATCAC"},
	{"D9", "TAAGCCGAAGCCCAACAACA", "AGGATCAGCATCACTATCAC"},
	{"F9", "ACATGAACATCAACAGTAAC", "AGGATCAGCATCACTATCAC"},
	{"H9", "CGAGAACGACAACGTTAACG", "AGGATCAGCATCACTATCAC"},
	{"J9", "TAACGTGAACGTCAACGGTA", "AGGATCAGCATCACTATCAC"},
	{"L9", "CGGTAACGGGAACGGCAACG", "AGGATCAGCATCACTATCAC"},
	{"N9", "CAACGCTAACGCGAACGCCA", "AGGATCAGCATCACTATCAC"},
	{"P9", "CGCCAACCATAACCAGAACC", "AGGATCAGCATCACTATCAC"},
	{"B10", "GCGGAAGCGCAAGCCTAAGC", "ATCACGATCACCATCTAGAT"},
	{"D10", "TAAGCCGAAGCCCAACAACA", "ATCACGATCACCATCTAGAT"},
	{"F10", "ACATGAACATCAACAGTAAC", "ATCACGATCACCATCTAGAT"},
	{"H10", "CGAGAACGACAACGTTAACG", "ATCACGATCACCATCTAGAT"},
	{"J10", "TAACGTGAACGTCAACGGTA", "ATCACGATCACCATCTAGAT"},
	{"L10", "CGGTAACGGGAACGGCAACG", "ATCACGATCACCATCTAGAT"},
	{"N10", "CAACGCTAACGCGAACGCCA", "ATCACGATCACCATCTAGAT"},
	{"P10", "CGCCAACCATAACCAGAACC", "ATCACGATCACCATCTAGAT"},
	{"B11", "GCGGAAGCGCAAGCCTAAGC", "TCTTGATCTTCATCTGTATC"},
	{"D11", "TAAGCCGAAGCCCAACAACA", "TCTTGATCTTCATCTGTATC"},
	{"F11", "ACATGAACATCAACAGTAAC", "TCTTGATCTTCATCTGTATC"},
	{"H11", "CGAGAACGACAACGTTAACG", "TCTTGATCTTCATCTGTATC"},
	{"J11", "TAACGTGAACGTCAACGGTA", "TCTTGATCTTCATCTGTATC"},
	{"L11", "CGGTAACGGGAACGGCAACG", "TCTTGATCTTCATCTGTATC"},
	{"N11", "CAACGCTAACGCGAACGCCA", "TCTTGATCTTCATCTGTATC"},
	{"P11", "CGCCAACCATAACCAGAACC", "TCTTGATCTTCATCTGTATC"},
	{"B12", "GCGGAAGCGCAAGCCTAAGC", "CCAGACACAGACTTAGACTG"},
	{"D12", "TAAGCCGAAGCCCAACAACA", "CCAGACACAGACTTAGACTG"},
	{"F12", "ACATGAACATCAACAGTAAC", "CCAGACACAGACTTAGACTG"},
	{"H12", "CGAGAACGACAACGTTAACG", "CCAGACACAGACTTAGACTG"},
	{"J12", "TAACGTGAACGTCAACGGTA", "CCAGACACAGACTTAGACTG"},
	{"L12", "CGGTAACGGGAACGGCAACG", "CCAGACACAGACTTAGACTG"},
	{"N12", "CAACGCTAACGCGAACGCCA", "CCAGACACAGACTTAGACTG"},
	{"P12", "CGCCAACCATAACCAGAACC", "CCAGACACAGACTTAGACTG"},
	{"B13", "GCGGAAGCGCAAGCCTAAGC", "GACTGAGACTCAGACGTAGA"},
	{"D13", "TAAGCCGAAGCCCAACAACA", "GACTGAGACTCAGACGTAGA"},
	{"F13", "ACATGAACATCAACAGTAAC", "GACTGAGACTCAGACGTAGA"},
	{"H13", "CGAGAACGACAACGTTAACG", "GACTGAGACTCAGACGTAGA"},
	{"J13", "TAACGTGAACGTCAACGGTA", "GACTGAGACTCAGACGTAGA"},
	{"L13", "CGGTAACGGGAACGGCAACG", "GACTGAGACTCAGACGTAGA"},
	{"N13", "CAACGCTAACGCGAACGCCA", "GACTGAGACTCAGACGTAGA"},
	{"P13", "CGCCAACCATAACCAGAACC", "GACTGAGACTCAGACGTAGA"},
	{"B14", "GCGGAAGCGCAAGCCTAAGC", "GTAGACGGAGACGCAGACCT"},
	{"D14", "TAAGCCGAAGCCCAACAACA", "GTAGACGGAGACGCAGACCT"},
	{"F14", "ACATGAACATCAACAGTAAC", "GTAGACGGAGACGCAGACCT"},
	{"H14", "CGAGAACGACAACGTTAACG", "GTAGACGGAGACGCAGACCT"},
	{"J14", "TAACGTGAACGTCAACGGTA", "GTAGACGGAGACGCAGACCT"},
	{"L14", "CGGTAACGGGAACGGCAACG", "GTAGACGGAGACGCAGACCT"},
	{"N14", "CAACGCTAACGCGAACGCCA", "GTAGACGGAGACGCAGACCT"},
	{"P14", "CGCCAACCATAACCAGAACC", "GTAGACGGAGACGCAGACCT"},
	{"B15", "GCGGAAGCGCAAGCCTAAGC", "GACCTAGACCGAGACCCAGT"},
	{"D15", "TAAGCCGAAGCCCAACAACA", "GACCTAGACCGAGACCCAGT"},
	{"F15", "ACATGAACATCAACAGTAAC", "GACCTAGACCGAGACCCAGT"},
	{"H15", "CGAGAACGACAACGTTAACG", "GACCTAGACCGAGACCCAGT"},
	{"J15", "TAACGTGAACGTCAACGGTA", "GACCTAGACCGAGACCCAGT"},
	{"L15", "CGGTAACGGGAACGGCAACG", "GACCTAGACCGAGACCCAGT"},
	{"N15", "CAACGCTAACGCGAACGCCA", "GACCTAGACCGAGACCCAGT"},
	{"P15", "CGCCAACCATAACCAGAACC", "GACCTAGACCGAGACCCAGT"},
	{"B16", "GCGGAAGCGCAAGCCTAAGC", "CCAGTAGTAGGAGTAGCAGT"},
	{"D16", "TAAGCCGAAGCCCAACAACA", "CCAGTAGTAGGAGTAGCAGT"},
	{"F16", "ACATGAACATCAACAGTAAC", "CCAGTAGTAGGAGTAGCAGT"},
	{"H16", "CGAGAACGACAACGTTAACG", "CCAGTAGTAGGAGTAGCAGT"},
	{"J16", "TAACGTGAACGTCAACGGTA", "CCAGTAGTAGGAGTAGCAGT"},
	{"L16", "CGGTAACGGGAACGGCAACG", "CCAGTAGTAGGAGTAGCAGT"},
	{"N16", "CAACGCTAACGCGAACGCCA", "CCAGTAGTAGGAGTAGCAGT"},
	{"P16", "CGCCAACCATAACCAGAACC", "CCAGTAGTAGGAGTAGCAGT"},
	{"B17", "GCGGAAGCGCAAGCCTAAGC", "GCAGTACTAGTACGAGTACC"},
	{"D17", "TAAGCCGAAGCCCAACAACA", "GCAGTACTAGTACGAGTACC"},
	{"F17", "ACATGAACATCAACAGTAAC", "GCAGTACTAGTACGAGTACC"},
	{"H17", "CGAGAACGACAACGTTAACG", "GCAGTACTAGTACGAGTACC"},
	{"J17", "TAACGTGAACGTCAACGGTA", "GCAGTACTAGTACGAGTACC"},
	{"L17", "CGGTAACGGGAACGGCAACG", "GCAGTACTAGTACGAGTACC"},
	{"N17", "CAACGCTAACGCGAACGCCA", "GCAGTACTAGTACGAGTACC"},
	{"P17", "CGCCAACCATAACCAGAACC", "GCAGTACTAGTACGAGTACC"},
	{"B18", "GCGGAAGCGCAAGCCTAAGC", "GTACCAGTTACAGTTTTAGT"},
	{"D18", "TAAGCCGAAGCCCAACAACA", "GTACCAGTTACAGTTTTAGT"},
	{"F18", "ACATGAACATCAACAGTAAC", "GTACCAGTTACAGTTTTAGT"},
	{"H18", "CGAGAACGACAACGTTAACG", "GTACCAGTTACAGTTTTAGT"},
	{"J18", "TAACGTGAACGTCAACGGTA", "GTACCAGTTACAGTTTTAGT"},
	{"L18", "CGGTAACGGGAACGGCAACG", "GTACCAGTTACAGTTTTAGT"},
	{"N18", "CAACGCTAACGCGAACGCCA", "GTACCAGTTACAGTTTTAGT"},
	{"P18", "CGCCAACCATAACCAGAACC", "GTACCAGTTACAGTTTTAGT"},
	{"B19", "GCGGAAGCGCAAGCCTAAGC", "AGTTTGAGTTTCAGTTGTAG"},
	{"D19", "TAAGCCGAAGCCCAACAACA", "AGTTTGAGTTTCAGTTGTAG"},
	{"F19", "ACATGAACATCAACAGTAAC", "AGTTTGAGTTTCAGTTGTAG"},
	{"H19", "CGAGAACGACAACGTTAACG", "AGTTTGAGTTTCAGTTGTAG"},
	{"J19", "TAACGTGAACGTCAACGGTA", "AGTTTGAGTTTCAGTTGTAG"},
	{"L19", "CGGTAACGGGAACGGCAACG", "AGTTTGAGTTTCAGTTGTAG"},
	{"N19", "CAACGCTAACGCGAACGCCA", "AGTTTGAGTTTCAGTTGTAG"},
	{"P19", "CGCCAACCATAACCAGAACC", "AGTTTGAGTTTCAGTTGTAG"},
	{"B20", "GCGGAAGCGCAAGCCTAAGC", "GTTCCAGTGACAGTGTTAGT"},
	{"D20", "TAAGCCGAAGCCCAACAACA", "GTTCCAGTGACAGTGTTAGT"},
	{"F20", "ACATGAACATCAACAGTAAC", "GTTCCAGTGACAGTGTTAGT"},
	{"H20", "CGAGAACGACAACGTTAACG", "GTTCCAGTGACAGTGTTAGT"},
	{"J20", "TAACGTGAACGTCAACGGTA", "GTTCCAGTGACAGTGTTAGT"},
	{"L20", "CGGTAACGGGAACGGCAACG", "GTTCCAGTGACAGTGTTAGT"},
	{"N20", "CAACGCTAACGCGAACGCCA", "GTTCCAGTGACAGTGTTAGT"},
	{"P20", "CGCCAACCATAACCAGAACC", "GTTCCAGTGACAGTGTTAGT"},
	{"B21", "GCGGAAGCGCAAGCCTAAGC", "TTAGTGTGAGTGTCAGTGGT"},
	{"D21", "TAAGCCGAAGCCCAACAACA", "TTAGTGTGAGTGTCAGTGGT"},
	{"F21", "ACATGAACATCAACAGTAAC", "TTAGTGTGAGTGTCAGTGGT"},
	{"H21", "CGAGAACGACAACGTTAACG", "TTAGTGTGAGTGTCAGTGGT"},
	{"J21", "TAACGTGAACGTCAACGGTA", "TTAGTGTGAGTGTCAGTGGT"},
	{"L21", "CGGTAACGGGAACGGCAACG", "TTAGTGTGAGTGTCAGTGGT"},
	{"N21", "CAACGCTAACGCGAACGCCA", "TTAGTGTGAGTGTCAGTGGT"},
	{"P21", "CGCCAACCATAACCAGAACC", "TTAGTGTGAGTGTCAGTGGT"},
	{"B22", "GCGGAAGCGCAAGCCTAAGC", "GTGGTAGTGGGAGTGGCAGT"},
	{"D22", "TAAGCCGAAGCCCAACAACA", "GTGGTAGTGGGAGTGGCAGT"},
	{"F22", "ACATGAACATCAACAGTAAC", "GTGGTAGTGGGAGTGGCAGT"},
	{"H22", "CGAGAACGACAACGTTAACG", "GTGGTAGTGGGAGTGGCAGT"},
	{"J22", "TAACGTGAACGTCAACGGTA", "GTGGTAGTGGGAGTGGCAGT"},
	{"L22", "CGGTAACGGGAACGGCAACG", "GTGGTAGTGGGAGTGGCAGT"},
	{"N22", "CAACGCTAACGCGAACGCCA", "GTGGTAGTGGGAGTGGCAGT"},
	{"P22", "CGCCAACCATAACCAGAACC", "GTGGTAGTGGGAGTGGCAGT"},
	{"B23", "GCGGAAGCGCAAGCCTAAGC", "GCAGTGCTAGTGCGAGTGCC"},
	{"D23", "TAAGCCGAAGCCCAACAACA", "GCAGTGCTAGTGCGAGTGCC"},
	{"F23", "ACATGAACATCAACAGTAAC", "GCAGTGCTAGTGCGAGTGCC"},
	{"H23", "CGAGAACGACAACGTTAACG", "GCAGTGCTAGTGCGAGTGCC"},
	{"J23", "TAACGTGAACGTCAACGGTA", "GCAGTGCTAGTGCGAGTGCC"},
	{"L23", "CGGTAACGGGAACGGCAACG", "GCAGTGCTAGTGCGAGTGCC"},
	{"N23", "CAACGCTAACGCGAACGCCA", "GCAGTGCTAGTGCGAGTGCC"},
	{"P23", "CGCCAACCATAACCAGAACC", "GCAGTGCTAGTGCGAGTGCC"},
	{"B24", "GCGGAAGCGCAAGCCTAAGC", "GTGCCAGTCACAGTCTTAGT"},
	{"D24", "TAAGCCGAAGCCCAACAACA", "GTGCCAGTCACAGTCTTAGT"},
	{"F24", "ACATGAACATCAACAGTAAC", "GTGCCAGTCACAGTCTTAGT"},
	{"H24", "CGAGAACGACAACGTTAACG", "GTGCCAGTCACAGTCTTAGT"},
	{"J24", "TAACGTGAACGTCAACGGTA", "GTGCCAGTCACAGTCTTAGT"},
	{"L24", "CGGTAACGGGAACGGCAACG", "GTGCCAGTCACAGTCTTAGT"},
	{"N24", "CAACGCTAACGCGAACGCCA", "GTGCCAGTCACAGTCTTAGT"},
	{"P24", "CGCCAACCATAACCAGAACC", "GTGCCAGTCACAGTCTTAGT"},
})
View Source
var EdgeCheckSize = 120

EdgeCheckSize is how long to check from the edge of both sides of a read. This is important because SmithWaterman alignment, used for aligning barcodes, is a quadratic algorithm. Nanopore sequencing prep, especially ligation preparation, can add DNA to either end of an amplicon. The native barcode (NB) and native adapter (NA) sequence may or may not be on both sides, adding ~80bp to the read.

View Source
var MinimalReadSize = 200

MinimalReadSize is the minimal size of reads needed to barcode. This is mostly important for Nanopore reads, since amplicon Nanopore sequencing tends to generate quite a few small reads from PCR products that we do not want to barcode.

View Source
var ScoreMagicNumber = 28

ScoreMagicNumber is the SmithWaterman score needed to match a barcode. 28 is chosen as a magic number that fits pretty well with normal 40bp barcodes. (20bp primer + 20bp barcode)

Functions

func DualBarcodeSequence

func DualBarcodeSequence(sequence string, forwardPrimer string, reversePrimer string, primerSet DualBarcodePrimerSet) (string, error)

DualBarcodeSequence analyzes a sequence for both a forward and reverse barcode pair and returns their well.

Example
Output:

[B15 O1 O1 J22 C22 E20]

Types

type DualBarcode

type DualBarcode struct {
	Name    string
	Forward string
	Reverse string
}

DualBarcode contains a forward and reverse barcode.

type DualBarcodePrimerSet

type DualBarcodePrimerSet struct {
	BarcodeMap        map[string]DualBarcode
	ReverseBarcodeMap map[DualBarcode]string
	ForwardBarcodes   []string
	ReverseBarcodes   []string
}

DualBarcodePrimerSet represents a list of dual-barcoded wells in a convenient format.

func DualBarcodesToPrimerSet

func DualBarcodesToPrimerSet(dualBarcodes []DualBarcode) DualBarcodePrimerSet

DualBarcodesToPrimerSet parsers a list of dual barcodes into a dual barcode primer set.

func ParseDualPrimerSet

func ParseDualPrimerSet(csvFile io.Reader) (DualBarcodePrimerSet, error)

ParseDualPrimerSet parses a csv file into a DualBarcodePrimerSet.

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