fold

package

v0.0.0-...-45295e3 Latest Latest Go to latest Published: May 31, 2024 License: MIT Imports: 0 Imported by: 0

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Package fold contains DNA and RNA folding algorithms.

We have two supported algorithms: The dynamic Zuker algorithm, and LinearFold.

These packages work, but LinearFold needs a massive cleanup effort.

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type SequenceFolder interface {
	Fold(sequence string, temp float64) (dotBracket string, score float64, err error)
}

Path	Synopsis
linearfold
mfe
checks
energy_params
secondary_structure Package secondary_structure provides the structs needed to contain information about a RNA's secondary structure	Package secondary_structure provides the structs needed to contain information about a RNA's secondary structure
zuker Package zuker is a package for folding DNA and RNA sequences into secondary structures with the zuker algorithm.	Package zuker is a package for folding DNA and RNA sequences into secondary structures with the zuker algorithm.