Documentation
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Source Files
Directories
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| Path | Synopsis |
|---|---|
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Package arguments parses and validates command line arguments.
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Package arguments parses and validates command line arguments. |
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Package cc creates a scatter plot between two conditions.
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Package cc creates a scatter plot between two conditions. |
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Package correlation calculates the correlation between conditions and readouts.
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Package correlation calculates the correlation between conditions and readouts. |
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Package dotplot clusters conditions and readouts for visualization as a dotplot.
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Package dotplot clusters conditions and readouts for visualization as a dotplot. |
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biclustering
Package biclustering clusters data using nestedcluster by H. Choi.
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Package biclustering clusters data using nestedcluster by H. Choi. |
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hierarchical
Package hierarchical clusters data for dot plots.
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Package hierarchical clusters data for dot plots. |
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nocluster
Package nocluster generates dot plots based on requested condition and readout ordering.
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Package nocluster generates dot plots based on requested condition and readout ordering. |
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Package settings logs analysis settings.
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Package settings logs analysis settings. |
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Package specificity creates scatter plots for condition showing readout specificty.
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Package specificity creates scatter plots for condition showing readout specificty. |
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validate
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data
Package data ensures that the input file (passed as slice map) has no errors in formatting.
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Package data ensures that the input file (passed as slice map) has no errors in formatting. |
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settings
Package settings validates user analysis settings.
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Package settings validates user analysis settings. |
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