read

Documentation

Overview

Package read reads input files

Index

• func Database(filename string, ignoreInvalid bool) ([]types.Protein, map[string]string)
• func Peptides(options types.Parameters) ([]types.Peptide, map[string]string, string)

Functions

func Database

func Database(filename string, ignoreInvalid bool) ([]types.Protein, map[string]string)

Database reads a fasta database and generates a gene ID to gene name map

func Peptides

func Peptides(options types.Parameters) ([]types.Peptide, map[string]string, string)

Peptides is an interface for opening a peptide file and passing it to the correct parser func Peptides(filename string, pipeline string, fdr, peptideProbabilty float64, inferEnzyme bool) ([]types.Peptide, map[string]string, string) {