organelle

package

v0.0.0-...-40008dc Latest Latest Go to latest Published: Jun 11, 2022 License: MIT Imports: 4 Imported by: 0

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type Compartments []struct {
	Name     string   `json:"name"`
	Proteins []string `json:"proteins"`
}

Compartments contains the name and list of proteins belonging to each compartment to compare.

func ReadCompartments(filename string) Compartments

ReadCompartments reads JSON file with compartments and their proteins

Path	Synopsis
isolation Package isolation calculates percent isolation of each NMF compartment.	Package isolation calculates percent isolation of each NMF compartment.
overlap Package overlap calculates overlap metrics between two lists of proteins	Package overlap calculates overlap metrics between two lists of proteins
shared Package shared outputs metrics on the regions found in preys shared by two lists of proteins	Package shared outputs metrics on the regions found in preys shared by two lists of proteins