rankaverage

README

Module name: interaction-rankaverage

Calculates the average bait interaction rank for a list of preys.

parameters	definition	default
fdr	FDR threshold	0.01
outFile	output file	prey-rank-average.txt
preys	list of preys
saint	SAINT file

Example file formats

preys

Must have a header, with first column having gene names.

gene
preyA
preyB
preyC

Output

• prey-rank-average.txt

prey  mean  sd  interaction ranks
preyA 3.5 0.707 3,4

preyA interacted with two baits, and was the 3 and 4th best prey for those baits after control-subtracting and length adjusting spectral counts

Documentation

Overview

Package rankaverage calculates the average interaction ranks for supplied prey list

Index

• func CalculateRankAverages(fileOptions map[string]interface{})

Functions

func CalculateRankAverages

func CalculateRankAverages(fileOptions map[string]interface{})

CalculateRankAverages calculates the average interaction rank for each prey in a supplied list.