Documentation
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Overview ¶
PGS is a tool for simulations of biogeographic data using spherical diffusion and dynamic geography.
Source Files
Directories
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| Path | Synopsis |
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Package cmpcmd implements a command to compare two reconstructions.
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Package cmpcmd implements a command to compare two reconstructions. |
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Package freq implements a command to calculate pixel frequencies from a simulation or inference output.
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Package freq implements a command to calculate pixel frequencies from a simulation or inference output. |
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Package infer implements a command to reads simulated data and infer the parameters using maximum likelihood.
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Package infer implements a command to reads simulated data and infer the parameters using maximum likelihood. |
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Package sim implements a command to simulate a phylogenetic tree and its biogeographic data.
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Package sim implements a command to simulate a phylogenetic tree and its biogeographic data. |
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Package unrot implements a command to rotate a reconstruction from past to present coordinates.
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Package unrot implements a command to rotate a reconstruction from past to present coordinates. |
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