country

Documentation

Overview

Command country creates a list of taxa and the countries with localities from a GBIF occurrence table.

Index

• Variables

Variables

var Command = &command.Command{
	Usage: `country [--tax <file>]
	[-i|--input <file>] [-o|--output <file>]`,
	Short: "create a taxon-country table",
	Long: `
Command country reads a GBIF occurrence table from the standard input and
prints a table with the taxon names and countries with specimen records.

A country table has the following columns:

	- name: the taxon name. If a taxonomy is used, the ranked and accepted
	        names will be used.
	- countryCode: an ISO 3166-1 alpha-2 code of the country.
	- country: name of the country

If the flag --tax is given with a file, a taxonomy will be read from the file,
and only the records that match the taxonomy will be selected.

By default, it will read the data from the standard input; use the flag
--input, or -i, to select a particular file.

By default, the results will be printed in the standard output; use the flag
--output, or -o, to define an output file.
	`,
	SetFlags: setFlags,
	Run:      run,
}