gromwell

Documentation

Index

• type CromwellClient
  • func (client CromwellClient) AbortWorkflow(workflowId string) (WorkflowStatus, error)
  • func (client CromwellClient) GetWorkflowMetadata(workflowId string) (WorkflowMetadata, error)
  • func (client CromwellClient) GetWorkflowOutputs(workflowId string) (WorkflowOutputs, error)
  • func (client CromwellClient) GetWorkflowStatus(workflowId string) (WorkflowStatus, error)
  • func (client CromwellClient) SubmitWorkflow(command SubmitCommand) (WorkflowStatus, error)
  • func (client CromwellClient) Version() (string, error)
• type JsonResponse
  • func (jsonResponse *JsonResponse) ToFile(filePath string) error
• type SubmitCommand
• type WorkflowMetadata
  • func (metadata WorkflowMetadata) String() string
• type WorkflowOutputs
  • func (outputs WorkflowOutputs) String() string
• type WorkflowStatus
  • func (status WorkflowStatus) String() string

Types

type CromwellClient

type CromwellClient struct {
	CromwellUrl *url.URL
}

func (CromwellClient) AbortWorkflow

func (client CromwellClient) AbortWorkflow(workflowId string) (WorkflowStatus, error)

func (CromwellClient) GetWorkflowMetadata

func (client CromwellClient) GetWorkflowMetadata(workflowId string) (WorkflowMetadata, error)

func (CromwellClient) GetWorkflowOutputs

func (client CromwellClient) GetWorkflowOutputs(workflowId string) (WorkflowOutputs, error)

func (CromwellClient) GetWorkflowStatus

func (client CromwellClient) GetWorkflowStatus(workflowId string) (WorkflowStatus, error)

func (CromwellClient) SubmitWorkflow

func (client CromwellClient) SubmitWorkflow(command SubmitCommand) (WorkflowStatus, error)

func (CromwellClient) Version

func (client CromwellClient) Version() (string, error)

type JsonResponse

type JsonResponse struct {
	Id        string
	JsonValue []byte
}

func (*JsonResponse) ToFile

func (jsonResponse *JsonResponse) ToFile(filePath string) error

type SubmitCommand

type SubmitCommand struct {
	WdlSource       string
	WorkflowInputs  string
	WorkflowOptions string
}

type WorkflowMetadata

type WorkflowMetadata struct {
	*JsonResponse
}

func (WorkflowMetadata) String

func (metadata WorkflowMetadata) String() string

type WorkflowOutputs

type WorkflowOutputs struct {
	*JsonResponse
}

func (WorkflowOutputs) String

func (outputs WorkflowOutputs) String() string

type WorkflowStatus

type WorkflowStatus struct {
	Id     string
	Status string
}

func (WorkflowStatus) String

func (status WorkflowStatus) String() string