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Path	Synopsis
bio-bam-gindex Command bio-bam-gindex reads a .bam file and writes a .gbai index file.	Command bio-bam-gindex reads a .bam file and writes a .gbai index file.
bio-bam-sort
cmd
sorter
bio-fusion
bio-pamtool
cmd
bio-pileup Given a BAM or PAM, and a BED file describing genomic positions of interest, bio-pileup reports the number of reads supporting each allele at each position.	Given a BAM or PAM, and a BED file describing genomic positions of interest, bio-pileup reports the number of reads supporting each allele at each position.