Directories
¶
Path | Synopsis |
---|---|
Package main contains the main method/entrypoint Module main.go contains the main method/entrypoint
|
Package main contains the main method/entrypoint Module main.go contains the main method/entrypoint |
internal
|
|
htscli
Package htscli deals with the construction and submission of command-line jobs Module bcftoolsview defines the job submission for the 'bcftools view' command, which streams VCF or BCF to stdout Package htscli deals with the construction and submission of command-line jobs Module command contains definitions for a single command-line job Package htscli deals with the construction and submission of command-line jobs Module commandchain defines a series of commands, running simultaneously as a piped chain, in which the stdout of one command feeds into the stdin of the next command Package htscli deals with the construction and submission of command-line jobs Module modifysam defines the job submission for the 'modify-sam' subcommand of the 'htsget-refserver-utils' cli app, which allows custom inclusion/exclusion of SAM fields and tags Package htscli deals with the construction and submission of command-line jobs Module samtoolsview defines the job submission for the 'samtools view' command, which streams SAM or BAM to stdout
|
Package htscli deals with the construction and submission of command-line jobs Module bcftoolsview defines the job submission for the 'bcftools view' command, which streams VCF or BCF to stdout Package htscli deals with the construction and submission of command-line jobs Module command contains definitions for a single command-line job Package htscli deals with the construction and submission of command-line jobs Module commandchain defines a series of commands, running simultaneously as a piped chain, in which the stdout of one command feeds into the stdin of the next command Package htscli deals with the construction and submission of command-line jobs Module modifysam defines the job submission for the 'modify-sam' subcommand of the 'htsget-refserver-utils' cli app, which allows custom inclusion/exclusion of SAM fields and tags Package htscli deals with the construction and submission of command-line jobs Module samtoolsview defines the job submission for the 'samtools view' command, which streams SAM or BAM to stdout |
htsconfig
Package htsconfig allows the program to be configured with modifiable properties, affecting runtime properties.
|
Package htsconfig allows the program to be configured with modifiable properties, affecting runtime properties. |
htsconstants
Package htsconstants contains program constants Module constants contains general program constants Package htsconstants contains program constants Module endpoints contains constants relating to htsget-specific endpoints Package htsconstants contains program constants Module headers contains constants relating to http header values used by htsget Package htsconstants contains program constants Module methods contains constants relating to HTTP/REST methods Package htsconstants contains program constants Module paramlocations contains constants relating to parameter locations within an HTTP request Package htsconstants contains program constants Module serverprops contains default properties for the serverprops configuration Package htsconstants contains program constants Module serviceinfo contains default properties for the service-info response
|
Package htsconstants contains program constants Module constants contains general program constants Package htsconstants contains program constants Module endpoints contains constants relating to htsget-specific endpoints Package htsconstants contains program constants Module headers contains constants relating to http header values used by htsget Package htsconstants contains program constants Module methods contains constants relating to HTTP/REST methods Package htsconstants contains program constants Module paramlocations contains constants relating to parameter locations within an HTTP request Package htsconstants contains program constants Module serverprops contains default properties for the serverprops configuration Package htsconstants contains program constants Module serviceinfo contains default properties for the service-info response |
htserror
Package htserror write HTTP errors with various codes, response bodies Module constants contains HTTP Error constants (status codes, error names, default messages) Package htserror write HTTP errors with various codes, response bodies Module error contains operations for constructing htsget errors, and writing them to the HTTP response
|
Package htserror write HTTP errors with various codes, response bodies Module constants contains HTTP Error constants (status codes, error names, default messages) Package htserror write HTTP errors with various codes, response bodies Module error contains operations for constructing htsget errors, and writing them to the HTTP response |
htsrequest
Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module defaults contains default values for each parameter Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module parsing contains operations for parsing various parameter types from an HTTP request Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module region contains genomic intervals Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module request defines structs and operations for a mature htsget request, which holds all htsget-related parameters and has insight into what information was requested by the client Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module set defines operations for setting request parameters to an HtsgetRequest, which first involves correct parsing, validation, and transformation.
|
Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module defaults contains default values for each parameter Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module parsing contains operations for parsing various parameter types from an HTTP request Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module region contains genomic intervals Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module request defines structs and operations for a mature htsget request, which holds all htsget-related parameters and has insight into what information was requested by the client Package htsrequest provides operations for parsing htsget-related parameters from the HTTP request, and performing validation and transformation Module set defines operations for setting request parameters to an HtsgetRequest, which first involves correct parsing, validation, and transformation. |
htsticket
Package htsticket produces the htsget JSON response ticket Module container holds all attributes beneath the base ticket object Package htsticket produces the htsget JSON response ticket Module headers holds header keys/values for a single data download url object Package htsticket produces the htsget JSON response ticket Module ticket is the base object of the htsget JSON ticket response Package htsticket produces the htsget JSON response ticket Module url holds information for downloading a single filepart from a ticket url
|
Package htsticket produces the htsget JSON response ticket Module container holds all attributes beneath the base ticket object Package htsticket produces the htsget JSON response ticket Module headers holds header keys/values for a single data download url object Package htsticket produces the htsget JSON response ticket Module ticket is the base object of the htsget JSON ticket response Package htsticket produces the htsget JSON response ticket Module url holds information for downloading a single filepart from a ticket url |
htsutils
Package htsutils provides general, high-level, reusable functions Module utils defines general, high-level, reusable functions
|
Package htsutils provides general, high-level, reusable functions Module utils defines general, high-level, reusable functions |
Click to show internal directories.
Click to hide internal directories.