pwm

Documentation

Overview

Position weight matrix search

based on algorithm by Deborah Toledo Flores

Index

• Variables
• func Valid(alphabet []byte)
• type PWM
  • func New(matrix [][]float64) (m *PWM)
  • func (self *PWM) Search(sequence *seq.Seq, start, end int, minScore float64) (scores []*feat.Feature)

Variables

var (
	LookUp util.CTL
)

Functions

func Valid

func Valid(alphabet []byte)

Types

type PWM

type PWM struct {
	FloatFormat byte
	Precision   int
	// contains filtered or unexported fields
}

func New

func New(matrix [][]float64) (m *PWM)

func (*PWM) Search

func (self *PWM) Search(sequence *seq.Seq, start, end int, minScore float64) (scores []*feat.Feature)