Directories
¶
| Path | Synopsis |
|---|---|
|
Package alphabet describes biological sequence letters, including quality scores.
|
Package alphabet describes biological sequence letters, including quality scores. |
|
Package seq provides the base for storage and manipulation of biological sequence information.
|
Package seq provides the base for storage and manipulation of biological sequence information. |
|
nucleic
Package nucleic provides support for manipulation of single nucleic acid sequences with and without quality data.
|
Package nucleic provides support for manipulation of single nucleic acid sequences with and without quality data. |
|
nucleic/alignment
Package alignment handles aligned sequences stored as columns.
|
Package alignment handles aligned sequences stored as columns. |
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nucleic/multi
Package multi handles collections of sequences as alignments or sets.
|
Package multi handles collections of sequences as alignments or sets. |
|
nucleic/packed
Package packed provides support for manipulation of single nucleic acid sequences with and without quality data.
|
Package packed provides support for manipulation of single nucleic acid sequences with and without quality data. |
|
protein
Package protein provides support for manipulation of single protein sequences with and without quality data.
|
Package protein provides support for manipulation of single protein sequences with and without quality data. |
|
protein/alignment
Package alignment handles aligned sequences stored as columns.
|
Package alignment handles aligned sequences stored as columns. |
|
protein/multi
Package multi handles collections of sequences as alignments or sets.
|
Package multi handles collections of sequences as alignments or sets. |
|
quality
Package quality provides support for manipulation of quality data in generic Phred format.
|
Package quality provides support for manipulation of quality data in generic Phred format. |
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quality/illumina
Package illumina provides support for manipulation of quality data in Illumina format.
|
Package illumina provides support for manipulation of quality data in Illumina format. |
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quality/sanger
Package sanger provides support for manipulation of quality data in Sanger format.
|
Package sanger provides support for manipulation of quality data in Sanger format. |
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quality/solexa
Package solexa provides support for manipulation of quality data in Solexa format.
|
Package solexa provides support for manipulation of quality data in Solexa format. |
|
sequtils
Package sequtils provides generic functions for manipulation of slices used in the seq types.
|
Package sequtils provides generic functions for manipulation of slices used in the seq types. |
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Packages for reading and writing sequence files
|
Packages for reading and writing sequence files |
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fasta
Package to read and write FASTA format files
|
Package to read and write FASTA format files |
|
fastq
Package to read and write FASTQ format files
|
Package to read and write FASTQ format files |
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