align

package

v0.0.0-...-25502c3 Latest Latest Go to latest Published: Oct 9, 2012 License: GPL-3.0 Imports: 1 Imported by: 0

Details

Sequence Alignment packages

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type Aligner interface {
	Align(reference, query *seq.Seq) seq.Alignment
}

type MultipleAligner interface {
	Align(sequences []*seq.Seq) seq.Alignment
}

Path	Synopsis
nw Needleman-Wunsch sequence alignment package	Needleman-Wunsch sequence alignment package
pals Package implementing functions required for PALS sequence alignment	Package implementing functions required for PALS sequence alignment
dp Package providing PALS dynamic programming alignment routines.	Package providing PALS dynamic programming alignment routines.
filter Package providing PALS sequence hit filter routines based on 'Efficient q-gram filters for finding all 𝛜-matches over a given length.' Kim R. Rasmussen, Jens Stoye, and Eugene W. Myers.	Package providing PALS sequence hit filter routines based on 'Efficient q-gram filters for finding all 𝛜-matches over a given length.' Kim R. Rasmussen, Jens Stoye, and Eugene W. Myers.
sw Smith-Waterman sequence alignment package	Smith-Waterman sequence alignment package