utils

Documentation

Index

• func GetReader(inputfile string) (*os.File, *bufio.Reader, error)
• func OpenFile(inputfile string) (*os.File, error)
• func ReadCompTrees(inputfile string, compTrees chan<- tree.Trees) (int, error)
• func ReadCompTreesFile(reader *bufio.Reader, compTrees chan<- tree.Trees) (int, error)
• func ReadRefTree(inputfile string) (*tree.Tree, error)
• func ReadRefTreeFile(reader *bufio.Reader) (*tree.Tree, error)
• func ReadUntilSemiColon(r *bufio.Reader) (string, error)
• func Readln(r *bufio.Reader) (string, error)

Functions

func GetReader

func GetReader(inputfile string) (*os.File, *bufio.Reader, error)

Returns the opened file and a buffered reader (gzip or not) for the file

func OpenFile

func OpenFile(inputfile string) (*os.File, error)

func ReadCompTrees

func ReadCompTrees(inputfile string, compTrees chan<- tree.Trees) (int, error)

Reads all the trees from the input file and send them to the channel

func ReadCompTreesFile

func ReadCompTreesFile(reader *bufio.Reader, compTrees chan<- tree.Trees) (int, error)

Read a bunch of trees from the input reader and send each of them to the channel this function does not close the reader

func ReadRefTree

func ReadRefTree(inputfile string) (*tree.Tree, error)

func ReadRefTreeFile

func ReadRefTreeFile(reader *bufio.Reader) (*tree.Tree, error)

Reads one tree from the input reader this function does not close the reader

func ReadUntilSemiColon

func ReadUntilSemiColon(r *bufio.Reader) (string, error)

ReadUntilSemiColon returns a string (without the ending \n) from the input buffered reader, ending at ';' or at end of file It allows to read a newick tree on several lines An error is returned iff there is an error with the buffered reader.

func Readln

func Readln(r *bufio.Reader) (string, error)

Readln returns a single line (without the ending \n) from the input buffered reader. An error is returned iff there is an error with the buffered reader.