cmd

Documentation

Overview

bammask : Masking nucleotides in bam files

Copyright © 2022 Institut Pasteur, Paris

Author: Frederic Lemoine

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

bammask : Masking nucleotides in bam files

Copyright © 2022 Institut Pasteur, Paris

Author: Frederic Lemoine

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

Index

• func Execute()

Functions

func Execute

func Execute()

Execute adds all child commands to the root command and sets flags appropriately. This is called by main.main(). It only needs to happen once to the rootCmd.