README
¶
biostuff
go get github.com/fluhus/biostuff/...
Pure Go packages for handling biological data. Minimal and efficient.
Package Overview
- Data formats
- Nucleotide & amino-acid sequence utilities
- Algorithms & data structures
Help or Get Help
I'd love to hear from you. Open an issue if you find a bug or have any feedback or question.
Directories
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| Path | Synopsis |
|---|---|
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Package align provides functionality for aligning sequences.
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Package align provides functionality for aligning sequences. |
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formats
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bed
Package bed parses BED files.
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Package bed parses BED files. |
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fasta
Package fasta parses fasta files.
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Package fasta parses fasta files. |
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fasta/fastaserver
Command fastaserver is a server that serves sequences from a fasta file.
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Command fastaserver is a server that serves sequences from a fasta file. |
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fastq
Package fastq parses fastq files.
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Package fastq parses fastq files. |
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newick
Package newick handles reading and writing Newick-formatted trees.
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Package newick handles reading and writing Newick-formatted trees. |
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sam
Package sam parses SAM files.
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Package sam parses SAM files. |
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smtext
Package smtext handles text representations of substitution matrices.
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Package smtext handles text representations of substitution matrices. |
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Package regions provides an index for searching on intervals.
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Package regions provides an index for searching on intervals. |
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Package sequtil provides functions for processing genetic sequences.
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Package sequtil provides functions for processing genetic sequences. |
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Package trie provides a prefix tree implementation.
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Package trie provides a prefix tree implementation. |
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