Documentation ¶
Index ¶
- Variables
- func ClinicalEigengene(tissue string) ([]byte, error)
- func ClinicalROI(tissue string) ([]byte, error)
- func ClinicalRanksum(tissue, cohort string) ([]byte, error)
- func CohortBoxplot(module, orderByTissue, orderByModule, cohort string) (string, error)
- func CohortHeatmap(tissue, module, cohort string) (string, error)
- func CohortScatterplot(tissueA, tissueB, moduleA, moduleB, cohort string) (string, error)
- func EigengeneCorrelation(tissueA, tissueB string) ([]byte, error)
- func GeneListCSV(modules []string, tissue string) ([]byte, error)
- func GeneOverlapTest(tissueA, tissueB string) ([]byte, error)
- func Get(key, filetype string) ([]byte, error)
- func GetAllModuleNames(gene string) ([]string, error)
- func GetCohorts() ([]string, error)
- func GetCommonGOTermGenes(module, tissue, id string) ([]string, error)
- func GetCommonGenes(tissue, module, geneset, status string) ([]string, error)
- func GetCommonUserERGenes(module, tissue string, genelist []string) ([]string, error)
- func GetGOTermNames() ([]string, error)
- func GetGeneSetNames() ([]string, error)
- func GetGenes() ([]string, error)
- func GetSlice(pkg, fun, args string) ([]string, error)
- func GetTOMGraph(tissue, component, format string) ([]byte, error)
- func GetTissues() ([]string, error)
- func Heatmap(tissue, module string) (string, error)
- func HeatmapReOrder(tissue, module, orderByTissue, orderByModule, cohort string) (string, error)
- func Init(addr, username, password string)
- func ModuleHypergeometricTest(tissueA, tissueB string) ([]byte, error)
- func PatientRankCorrelation(tissueA, tissueB string) ([]byte, error)
- func PatientRankSum(tissueA, tissueB, cohort string) ([]byte, error)
- func ROITest(tissueA, tissueB string) ([]byte, error)
- type Analyses
- type ByName
- type EnrichmentScores
- type GOTerm
- type Gene
- type Module
- type ModuleScores
- type Response
- type Score
- type Set
- type UserScore
Constants ¶
This section is empty.
Variables ¶
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var R r.Client
Functions ¶
func ClinicalEigengene ¶
func ClinicalROI ¶
func ClinicalRanksum ¶
func CohortBoxplot ¶
func CohortHeatmap ¶
func CohortScatterplot ¶
func EigengeneCorrelation ¶
func GeneOverlapTest ¶
func GetAllModuleNames ¶
func GetCohorts ¶
func GetCommonGOTermGenes ¶
func GetCommonGenes ¶
func GetCommonUserERGenes ¶
func GetGOTermNames ¶
func GetGeneSetNames ¶
func GetTOMGraph ¶
func GetTissues ¶
func HeatmapReOrder ¶
func PatientRankCorrelation ¶
func PatientRankSum ¶
Types ¶
type Analyses ¶
type Analyses struct { Ranksum []float64 `json:"ranksum"` Overlap []float64 `json:"overlap"` Common []string `json:"common"` }
type EnrichmentScores ¶
func GetEnrichmentScores ¶
func GetEnrichmentScores(module, tissue string) (enrichment EnrichmentScores, err error)
type GOTerm ¶
type GOTerm struct { GOId string `json:"GO.ID"` Term string Annotated int Significant int Expected float64 ClassicFisher string `json:"classicFisher"` Weight01Fisher string `json:"weight01Fisher"` Rank int `json:"Rank in weight01Fisher"` Module string `json:"module"` }
func GetGOScoresForTissue ¶
type Module ¶
type Module struct { Name string Tissue string HeatmapUrl string AlternativeHeatmapUrl string Genes []Gene EnrichmentScores EnrichmentScores GOTerms []GOTerm Url string ScatterplotUrl string BoxplotUrl string }
func GetModules ¶
type ModuleScores ¶
type ModuleScores struct {
// contains filtered or unexported fields
}
type Score ¶
type Score struct { Set string `json:"sig.set"` Name string `json:"_row"` Size int `json:"sig.size,string"` UpDownCommon int `json:"updn.common,string"` UpDownPvalue float64 `json:"updn.pval,string"` UpCommon int `json:"up.common,string"` UpPvalue float64 `json:"up.pval,string"` DownCommon int `json:"dn.common,string"` DownPvalue float64 `json:"dn.pval,string"` Tissue string `json:"tissue,omitempty"` }
func GetEnrichmentForTissue ¶
func GetEnrichmentScore ¶
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