staging

Documentation

Index

• func ElementToValueString(element map[string]interface{}, columns []string) []string
• type PubRecord
  • func NormaLizePubRecord(pubs []string) []*PubRecord
• type Sqlite
  • func NewStagingSqlite(dbh *sqlx.DB, parser *gochado.SqlParser) *Sqlite
  • func (sqlite *Sqlite) AddDataRow(row string)
  • func (sqlite *Sqlite) AlterTables()
  • func (sqlite *Sqlite) BulkLoad()
  • func (sqlite *Sqlite) CreateTables()
  • func (sqlite *Sqlite) DropTables()

Functions

func ElementToValueString

func ElementToValueString(element map[string]interface{}, columns []string) []string

Types

type PubRecord

type PubRecord struct {
	// contains filtered or unexported fields
}

Publication record with id and namespace

func NormaLizePubRecord

func NormaLizePubRecord(pubs []string) []*PubRecord

type Sqlite

type Sqlite struct {
	*gochado.ChadoHelper
	// contains filtered or unexported fields
}

Sqlite backend for loading GPAD in staging tables

func NewStagingSqlite

func NewStagingSqlite(dbh *sqlx.DB, parser *gochado.SqlParser) *Sqlite

func (*Sqlite) AddDataRow

func (sqlite *Sqlite) AddDataRow(row string)

func (*Sqlite) AlterTables

func (sqlite *Sqlite) AlterTables()

func (*Sqlite) BulkLoad

func (sqlite *Sqlite) BulkLoad()

func (*Sqlite) CreateTables

func (sqlite *Sqlite) CreateTables()

func (*Sqlite) DropTables

func (sqlite *Sqlite) DropTables()