service

Documentation

Index

• type StockService
  • func NewStockService(repo repository.StockRepository, pub message.Publisher, opt ...aphgrpc.Option) *StockService
  • func (s *StockService) CreatePlasmid(ctx context.Context, r *stock.NewPlasmid) (*stock.Plasmid, error)
  • func (s *StockService) CreateStrain(ctx context.Context, r *stock.NewStrain) (*stock.Strain, error)
  • func (s *StockService) GetPlasmid(ctx context.Context, r *stock.StockId) (*stock.Plasmid, error)
  • func (s *StockService) GetStrain(ctx context.Context, r *stock.StockId) (*stock.Strain, error)
  • func (s *StockService) ListPlasmids(ctx context.Context, r *stock.StockParameters) (*stock.PlasmidCollection, error)
  • func (s *StockService) ListStrains(ctx context.Context, param *stock.StockParameters) (*stock.StrainCollection, error)
  • func (s *StockService) ListStrainsByIDs(ctx context.Context, r *stock.StockIdList) (*stock.StrainList, error)
  • func (s *StockService) LoadPlasmid(ctx context.Context, r *stock.ExistingPlasmid) (*stock.Plasmid, error)
  • func (s *StockService) LoadStrain(ctx context.Context, r *stock.ExistingStrain) (*stock.Strain, error)
  • func (s *StockService) OboJSONFileUpload(stream stock.StockService_OboJSONFileUploadServer) error
  • func (s *StockService) RemoveStock(ctx context.Context, r *stock.StockId) (*empty.Empty, error)
  • func (s *StockService) UpdatePlasmid(ctx context.Context, r *stock.PlasmidUpdate) (*stock.Plasmid, error)
  • func (s *StockService) UpdateStrain(ctx context.Context, r *stock.StrainUpdate) (*stock.Strain, error)

Types

type StockService

type StockService struct {
	*aphgrpc.Service

	stock.UnimplementedStockServiceServer
	// contains filtered or unexported fields
}

StockService is the container for managing stock service definition

func NewStockService

func NewStockService(
	repo repository.StockRepository,
	pub message.Publisher,
	opt ...aphgrpc.Option,
) *StockService

NewStockService is the constructor for creating a new instance of StockService

func (*StockService) CreatePlasmid

func (s *StockService) CreatePlasmid(
	ctx context.Context,
	r *stock.NewPlasmid,
) (*stock.Plasmid, error)

CreatePlasmid handles the creation of a new plasmid

func (*StockService) CreateStrain

func (s *StockService) CreateStrain(
	ctx context.Context,
	r *stock.NewStrain,
) (*stock.Strain, error)

CreateStrain handles the creation of a new strain

func (*StockService) GetPlasmid

func (s *StockService) GetPlasmid(
	ctx context.Context,
	r *stock.StockId,
) (*stock.Plasmid, error)

GetPlasmid handles getting a plasmid by its ID

func (*StockService) GetStrain

func (s *StockService) GetStrain(
	ctx context.Context,
	r *stock.StockId,
) (*stock.Strain, error)

GetStrain handles getting a strain by its ID

func (*StockService) ListPlasmids

func (s *StockService) ListPlasmids(
	ctx context.Context,
	r *stock.StockParameters,
) (*stock.PlasmidCollection, error)

ListPlasmids lists all existing plasmids

func (*StockService) ListStrains

func (s *StockService) ListStrains(
	ctx context.Context,
	param *stock.StockParameters,
) (*stock.StrainCollection, error)

ListStrains lists all existing strains

func (*StockService) ListStrainsByIDs

func (s *StockService) ListStrainsByIDs(
	ctx context.Context,
	r *stock.StockIdList,
) (*stock.StrainList, error)

ListStrainsByIds gets a list of strains from a list of strain identifiers

func (*StockService) LoadPlasmid

func (s *StockService) LoadPlasmid(
	ctx context.Context,
	r *stock.ExistingPlasmid,
) (*stock.Plasmid, error)

LoadPlasmid loads plasmids with existing IDs into the database

func (*StockService) LoadStrain

func (s *StockService) LoadStrain(
	ctx context.Context,
	r *stock.ExistingStrain,
) (*stock.Strain, error)

LoadStock loads strains with existing IDs into the database

func (*StockService) OboJSONFileUpload

func (s *StockService) OboJSONFileUpload(
	stream stock.StockService_OboJSONFileUploadServer,
) error

func (*StockService) RemoveStock

func (s *StockService) RemoveStock(
	ctx context.Context,
	r *stock.StockId,
) (*empty.Empty, error)

RemoveStock removes an existing stock

func (*StockService) UpdatePlasmid

func (s *StockService) UpdatePlasmid(
	ctx context.Context,
	r *stock.PlasmidUpdate,
) (*stock.Plasmid, error)

UpdatePlasmid handles updating an existing plasmid

func (*StockService) UpdateStrain

func (s *StockService) UpdateStrain(
	ctx context.Context,
	r *stock.StrainUpdate,
) (*stock.Strain, error)

UpdateStrain handles updating an existing strain