cli

Documentation

Index

• func LoadUniprotMappings(cltx *cli.Context) error
• func UniprotFlags() []cli.Flag
• type UniProtCrossRefProperty
• type UniProtCrossReference
• type UniProtEntry
• type UniProtResponse

Functions

func LoadUniprotMappings

func LoadUniprotMappings(cltx *cli.Context) error

LoadUniprotMappings stores uniprot and gene name or identifier mapping in redis

func UniprotFlags

func UniprotFlags() []cli.Flag

Types

type UniProtCrossRefProperty

type UniProtCrossRefProperty struct {
	Key   string `json:"key"`
	Value string `json:"value"`
}

type UniProtCrossReference

type UniProtCrossReference struct {
	Database   string                    `json:"database"`
	ID         string                    `json:"id"`
	Properties []UniProtCrossRefProperty `json:"properties"`
}

type UniProtEntry

type UniProtEntry struct {
	PrimaryAccession string                  `json:"primaryAccession"`
	CrossReferences  []UniProtCrossReference `json:"uniProtKBCrossReferences"`
}

type UniProtResponse

type UniProtResponse struct {
	Results []UniProtEntry `json:"results"`
}