mocks

package
v0.0.0-...-a9002f1 Latest Latest
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 Go to latest Published: Jan 11, 2025 License: BSD-2-Clause Imports: 21 Imported by: 0

Documentation

Index

Constants

This section is empty.

Variables

View Source 
var MockGenModAnno = MockTagAnno("exogenous mutation", registry.MuttypeTag)
View Source 
var MockGenotypeAnno = MockTagAnno(
	"axeA1,axeB1,axeC1,sadA-[sadA-KO],[pSadA-GFP],bsR,neoR",
	registry.GenoTag,
)
View Source 
var MockInStockAnno = MockTagAnno("DBS0236922", registry.SysnameTag)
View Source 
var MockMutMethodAnno = MockTagAnno("Random Insertion", registry.MutmethodTag)
View Source 
var MockOrderAttributes = &order.OrderAttributes{
	CreatedAt:        timestamppb.Now(),
	UpdatedAt:        timestamppb.Now(),
	Courier:          "USPS",
	CourierAccount:   "123456",
	Comments:         "first order",
	Payment:          "credit",
	PurchaseOrderNum: "987654",
	Status:           0,
	Consumer:         "art@vandelayindustries.com",
	Payer:            "george@costanza.com",
	Purchaser:        "thatsgold@jerry.org",
	Items:            []string{"DBS123456"},
}
View Source 
var MockPlasmidAttributes = &stock.PlasmidAttributes{
	CreatedAt:       StockTimestamp,
	UpdatedAt:       StockTimestamp,
	CreatedBy:       "art@vandelay.com",
	UpdatedBy:       "art@vandelay.com",
	Summary:         "test summary",
	EditableSummary: "editable test summary",
	Genes:           []string{"DDB_G0285425"},
	Dbxrefs:         []string{"test1"},
	Publications:    []string{"99999"},
	ImageMap:        "https://eric.dictybase.dev/test.jpg",
	Sequence:        "ABCDEF",
	Name:            "pTest",
}
View Source 
var MockStrainAttributes = &stock.StrainAttributes{
	CreatedAt:       StockTimestamp,
	UpdatedAt:       StockTimestamp,
	CreatedBy:       "art@vandelay.com",
	UpdatedBy:       "art@vandelay.com",
	Summary:         "test summary",
	EditableSummary: "editable test summary",
	Genes:           []string{"DDB_G0285425"},
	Dbxrefs:         []string{"test1"},
	Publications:    []string{"99999"},
	Label:           "test99",
	Species:         "human",
	Plasmid:         "pTest",
	Names:           []string{"fusilli"},
}
View Source 
var MockSysNameAnno = MockTagAnno("DBS0236922", registry.SysnameTag)
View Source 
var MockUpdatePlasmidAttributes = &stock.PlasmidAttributes{
	CreatedAt:       StockTimestamp,
	UpdatedAt:       StockTimestamp,
	CreatedBy:       "art@vandelay.com",
	UpdatedBy:       "h.e.@pennypacker.com",
	Summary:         "updated summary",
	EditableSummary: "editable updated summary",
	Depositor:       "puddy@nyrangers.com",
	Genes:           []string{"sadA"},
	Dbxrefs:         []string{"test1"},
	Publications:    []string{"99999"},
	ImageMap:        "https://eric.dictybase.dev/test.jpg",
	Sequence:        "ABCDEF",
	Name:            "pTest",
}
View Source 
var MockUpdateStrainAttributes = &stock.StrainAttributes{
	CreatedAt:       StockTimestamp,
	UpdatedAt:       StockTimestamp,
	CreatedBy:       "art@vandelay.com",
	UpdatedBy:       "h.e.@pennypacker.com",
	Summary:         "updated summary",
	EditableSummary: "editable updated summary",
	Depositor:       "puddy@nyrangers.com",
	Genes:           []string{"sadA"},
	Dbxrefs:         []string{"test1"},
	Publications:    []string{"99999"},
	Label:           "test99",
	Species:         "human",
	Plasmid:         "pTest",
	Names:           []string{"fusilli"},
}
View Source 
var StockTimestamp = timestamppb.New(t)

Functions

func MockCharacteristicsAnno 

func MockCharacteristicsAnno() *annotation.TaggedAnnotationCollection

func MockNamesAnno 

func MockNamesAnno() *annotation.TaggedAnnotationCollection

func MockPhenoCollectionAnno 

func MockPhenoCollectionAnno(
	tag, id string,
) *annotation.TaggedAnnotationCollection_Data

MockPhenoCollectionAnno is used to test the ListStrainsWithPhenotype method.

func MockPhenotypeAnno 

func MockPhenotypeAnno() *annotation.TaggedAnnotationGroupCollection

func MockPhenotypeListAnno 

func MockPhenotypeListAnno() *annotation.TaggedAnnotationCollection

func MockPlasmidInputWithParams 

func MockPlasmidInputWithParams(depositor string) *stock.PlasmidAttributes

func MockStrain 

func MockStrain() *stock.Strain

func MockStrainInputWithParams 

func MockStrainInputWithParams(
	depositor, parent string,
) *stock.StrainAttributes

func MockTagAnno 

func MockTagAnno(value, tag string) *annotation.TaggedAnnotation

func MockTagGroupAnno 

func MockTagGroupAnno(
	onto, tag, value string,
) *annotation.TaggedAnnotationGroup_Data

func MockTagList 

func MockTagList(
	onto, tag, value string,
) *annotation.TaggedAnnotationCollection_Data

func MockedAnnotationClient 

func MockedAnnotationClient() *clients.TaggedAnnotationServiceClient

func MockedAuthClient 

func MockedAuthClient() authentication.LogtoClient

func MockedCharacteristicsClient 

func MockedCharacteristicsClient() *clients.TaggedAnnotationServiceClient

func MockedContentClient 

func MockedContentClient() *clients.ContentServiceClient

func MockedGenModClient 

func MockedGenModClient() *clients.TaggedAnnotationServiceClient

func MockedGenotypeClient 

func MockedGenotypeClient() *clients.TaggedAnnotationServiceClient

func MockedIdentityClient 

func MockedIdentityClient() *clients.IdentityServiceClient

func MockedInStockClient 

func MockedInStockClient() *clients.TaggedAnnotationServiceClient

func MockedMutMethodClient 

func MockedMutMethodClient() *clients.TaggedAnnotationServiceClient

func MockedNamesClient 

func MockedNamesClient() *clients.TaggedAnnotationServiceClient

func MockedOrderClient 

func MockedOrderClient() *clients.OrderServiceClient

func MockedPermissionClient 

func MockedPermissionClient() *clients.PermissionServiceClient

func MockedPhenotypeClient 

func MockedPhenotypeClient() *clients.TaggedAnnotationServiceClient

func MockedRoleClient 

func MockedRoleClient() *clients.RoleServiceClient

func MockedStockClient 

func MockedStockClient() *clients.StockServiceClient

func MockedSysNameAnnoClient 

func MockedSysNameAnnoClient() *clients.TaggedAnnotationServiceClient

func MockedUserClient 

func MockedUserClient() *clients.UserServiceClient

func TestLogger 

func TestLogger() *logrus.Entry

Types

type MockRegistry 

type MockRegistry struct {
	ConnMap *hashmap.Map
}

func (*MockRegistry) AddAPIConnection 

func (mr *MockRegistry) AddAPIConnection(key string, conn *grpc.ClientConn)

func (*MockRegistry) AddAPIEndpoint 

func (mr *MockRegistry) AddAPIEndpoint(key, endpoint string)

func (*MockRegistry) AddAuthClient 

func (mr *MockRegistry) AddAuthClient(
	key string, auth authentication.LogtoClient,
)

func (*MockRegistry) AddRecord 

func (mr *MockRegistry) AddRecord(key, value string)

func (*MockRegistry) AddRepository 

func (mr *MockRegistry) AddRepository(key string, st repository.Repository)

func (*MockRegistry) AddS3Client 

func (mr *MockRegistry) AddS3Client(key string, s3c *minio.Client)

func (*MockRegistry) GetAPIConnection 

func (mr *MockRegistry) GetAPIConnection(key string) (conn *grpc.ClientConn)

GetAPIClient looks up a client in the hashmap

func (MockRegistry) GetAPIEndpoint 

func (mr MockRegistry) GetAPIEndpoint(key string) string

func (*MockRegistry) GetAnnotationClient 

func (mr *MockRegistry) GetAnnotationClient(
	key string,
) annotation.TaggedAnnotationServiceClient

func (*MockRegistry) GetAuthClient 

func (mr *MockRegistry) GetAuthClient(key string) authentication.LogtoClient

func (*MockRegistry) GetContentClient 

func (mr *MockRegistry) GetContentClient(
	key string,
) content.ContentServiceClient

func (*MockRegistry) GetIdentityClient 

func (mr *MockRegistry) GetIdentityClient(
	key string,
) identity.IdentityServiceClient

func (*MockRegistry) GetOrderClient 

func (mr *MockRegistry) GetOrderClient(key string) order.OrderServiceClient

func (*MockRegistry) GetPermissionClient 

func (mr *MockRegistry) GetPermissionClient(
	key string,
) user.PermissionServiceClient

func (*MockRegistry) GetRecord 

func (mr *MockRegistry) GetRecord(key string) string

func (MockRegistry) GetRedisRepository 

func (mr MockRegistry) GetRedisRepository(key string) repository.Repository

func (*MockRegistry) GetRoleClient 

func (mr *MockRegistry) GetRoleClient(key string) user.RoleServiceClient

func (*MockRegistry) GetS3Client 

func (mr *MockRegistry) GetS3Client(key string) *minio.Client

func (*MockRegistry) GetStockClient 

func (mr *MockRegistry) GetStockClient(key string) stock.StockServiceClient

func (*MockRegistry) GetUserClient 

func (mr *MockRegistry) GetUserClient(key string) user.UserServiceClient

func (*MockRegistry) ServiceMap 

func (mr *MockRegistry) ServiceMap() map[string]string

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