call

Documentation

Index

• Constants
• func Call(input, output, ref, bedFile string, excludeBeds []string, minMapQ uint8, ...)

Constants

const (
	F1R2 orientation = true
	F2R1 orientation = false
)

Functions

func Call

func Call(input, output, ref, bedFile string, excludeBeds []string, minMapQ uint8, minTotalDepth, minStrandedDepth int, allowSuppAln bool, minAf float64, minBaseQuality, minContigSize, minReadFamilyLength int, baseQualPenalty, maxSoftClipFraction float64, endPad, maxOverlappingFamilies int, countOverlappingPairs, callSingleStrand bool, maxVariantsPerReadFamily int, debugLevel, threads int, debugOut string)