idmapper

Documentation

Index

• Variables
• func Load(mappingFileDir string) map[string]*ConversionTable
• type ConversionTable
• type IdMapper
  • func NewIdMapper(resourceFile string) (mapper IdMapper)
  • func (mapper IdMapper) Map(values []string, filter []string) MappingResult
• type Mapper
• type MappingEntry
• type MappingResult

Variables

var TargetColumns = []string{"UniProtKB-AC", "UniProtKB-ID", "GeneID", "Ensembl", "Symbol", "LocusTag", "Synonyms"}

Functions

func Load

func Load(mappingFileDir string) map[string]*ConversionTable

Types

type ConversionTable

type ConversionTable struct {
	MappingTable map[string]map[string]*MappingEntry
}

type IdMapper

type IdMapper struct {
	Tables  map[string]*ConversionTable
	Species string
}

func NewIdMapper

func NewIdMapper(resourceFile string) (mapper IdMapper)

func (IdMapper) Map

func (mapper IdMapper) Map(values []string, filter []string) MappingResult

type Mapper

type Mapper interface {
	Map(values []string, filter []string) MappingResult
}

type MappingEntry

type MappingEntry struct {
	In      string                 `json:"in"`
	InType  string                 `json:"inType"`
	Species string                 `json:"species"`
	Matches map[string]interface{} `json:"matches"`
}

type MappingResult

type MappingResult struct {
	Matched   []MappingEntry `json:"matched"`
	Unmatched []string       `json:"unmatched"`
}