genomics

package
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 Go to latest Published: Mar 21, 2017 License: BSD-3-Clause Imports: 13 Imported by: 0

Documentation

Overview

Package genomics provides access to the Genomics API.

See https://cloud.google.com/genomics

Usage example: 

import "google.golang.org/api/genomics/v1"
...
genomicsService, err := genomics.New(oauthHttpClient)

Index

Constants

View Source 
const (
	// View and manage your data in Google BigQuery
	BigqueryScope = "https://www.googleapis.com/auth/bigquery"

	// View and manage your data across Google Cloud Platform services
	CloudPlatformScope = "https://www.googleapis.com/auth/cloud-platform"

	// Manage your data in Google Cloud Storage
	DevstorageReadWriteScope = "https://www.googleapis.com/auth/devstorage.read_write"

	// View and manage Genomics data
	GenomicsScope = "https://www.googleapis.com/auth/genomics"

	// View Genomics data
	GenomicsReadonlyScope = "https://www.googleapis.com/auth/genomics.readonly"
)

OAuth2 scopes used by this API.

Variables

This section is empty.

Functions

This section is empty.

Types

type Annotation 

type Annotation struct {
	// AnnotationSetId: The annotation set to which this annotation belongs.
	AnnotationSetId string `json:"annotationSetId,omitempty"`

	// End: The end position of the range on the reference, 0-based
	// exclusive.
	End int64 `json:"end,omitempty,string"`

	// Id: The server-generated annotation ID, unique across all
	// annotations.
	Id string `json:"id,omitempty"`

	// Info: A map of additional read alignment information. This must be of
	// the form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// Name: The display name of this annotation.
	Name string `json:"name,omitempty"`

	// ReferenceId: The ID of the Google Genomics reference associated with
	// this range.
	ReferenceId string `json:"referenceId,omitempty"`

	// ReferenceName: The display name corresponding to the reference
	// specified by
	// `referenceId`, for example `chr1`, `1`, or `chrX`.
	ReferenceName string `json:"referenceName,omitempty"`

	// ReverseStrand: Whether this range refers to the reverse strand, as
	// opposed to the forward
	// strand. Note that regardless of this field, the start/end position of
	// the
	// range always refer to the forward strand.
	ReverseStrand bool `json:"reverseStrand,omitempty"`

	// Start: The start position of the range on the reference, 0-based
	// inclusive.
	Start int64 `json:"start,omitempty,string"`

	// Transcript: A transcript value represents the assertion that a
	// particular region of
	// the reference genome may be transcribed as RNA. An alternative
	// splicing
	// pattern would be represented as a separate transcript object. This
	// field
	// is only set for annotations of type `TRANSCRIPT`.
	Transcript *Transcript `json:"transcript,omitempty"`

	// Type: The data type for this annotation. Must match the containing
	// annotation
	// set's type.
	//
	// Possible values:
	//   "ANNOTATION_TYPE_UNSPECIFIED"
	//   "GENERIC" - A `GENERIC` annotation type should be used when no
	// other annotation
	// type will suffice. This represents an untyped annotation of the
	// reference
	// genome.
	//   "VARIANT" - A `VARIANT` annotation type.
	//   "GENE" - A `GENE` annotation type represents the existence of a
	// gene at the
	// associated reference coordinates. The start coordinate is typically
	// the
	// gene's transcription start site and the end is typically the end of
	// the
	// gene's last exon.
	//   "TRANSCRIPT" - A `TRANSCRIPT` annotation type represents the
	// assertion that a
	// particular region of the reference genome may be transcribed as RNA.
	Type string `json:"type,omitempty"`

	// Variant: A variant annotation, which describes the effect of a
	// variant on the
	// genome, the coding sequence, and/or higher level consequences at
	// the
	// organism level e.g. pathogenicity. This field is only set for
	// annotations
	// of type `VARIANT`.
	Variant *VariantAnnotation `json:"variant,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "AnnotationSetId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AnnotationSetId") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

Annotation: An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are `GENE` and `VARIANT`.

func (*Annotation) MarshalJSON 

func (s *Annotation) MarshalJSON() ([]byte, error)

type AnnotationSet 

type AnnotationSet struct {
	// DatasetId: The dataset to which this annotation set belongs.
	DatasetId string `json:"datasetId,omitempty"`

	// Id: The server-generated annotation set ID, unique across all
	// annotation sets.
	Id string `json:"id,omitempty"`

	// Info: A map of additional read alignment information. This must be of
	// the form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// Name: The display name for this annotation set.
	Name string `json:"name,omitempty"`

	// ReferenceSetId: The ID of the reference set that defines the
	// coordinate space for this
	// set's annotations.
	ReferenceSetId string `json:"referenceSetId,omitempty"`

	// SourceUri: The source URI describing the file from which this
	// annotation set was
	// generated, if any.
	SourceUri string `json:"sourceUri,omitempty"`

	// Type: The type of annotations contained within this set.
	//
	// Possible values:
	//   "ANNOTATION_TYPE_UNSPECIFIED"
	//   "GENERIC" - A `GENERIC` annotation type should be used when no
	// other annotation
	// type will suffice. This represents an untyped annotation of the
	// reference
	// genome.
	//   "VARIANT" - A `VARIANT` annotation type.
	//   "GENE" - A `GENE` annotation type represents the existence of a
	// gene at the
	// associated reference coordinates. The start coordinate is typically
	// the
	// gene's transcription start site and the end is typically the end of
	// the
	// gene's last exon.
	//   "TRANSCRIPT" - A `TRANSCRIPT` annotation type represents the
	// assertion that a
	// particular region of the reference genome may be transcribed as RNA.
	Type string `json:"type,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "DatasetId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

AnnotationSet: An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.

func (*AnnotationSet) MarshalJSON 

func (s *AnnotationSet) MarshalJSON() ([]byte, error)

type AnnotationsBatchCreateCall 

type AnnotationsBatchCreateCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsBatchCreateCall) Context 

func (c *AnnotationsBatchCreateCall) Context(ctx context.Context) *AnnotationsBatchCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsBatchCreateCall) Do 

func (c *AnnotationsBatchCreateCall) Do(opts ...googleapi.CallOption) (*BatchCreateAnnotationsResponse, error)

Do executes the "genomics.annotations.batchCreate" call. Exactly one of *BatchCreateAnnotationsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *BatchCreateAnnotationsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsBatchCreateCall) Fields 

func (c *AnnotationsBatchCreateCall) Fields(s ...googleapi.Field) *AnnotationsBatchCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsBatchCreateCall) Header 

func (c *AnnotationsBatchCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type AnnotationsCreateCall 

type AnnotationsCreateCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsCreateCall) Context 

func (c *AnnotationsCreateCall) Context(ctx context.Context) *AnnotationsCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsCreateCall) Do 

func (c *AnnotationsCreateCall) Do(opts ...googleapi.CallOption) (*Annotation, error)

Do executes the "genomics.annotations.create" call. Exactly one of *Annotation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Annotation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsCreateCall) Fields 

func (c *AnnotationsCreateCall) Fields(s ...googleapi.Field) *AnnotationsCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsCreateCall) Header 

func (c *AnnotationsCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type AnnotationsDeleteCall 

type AnnotationsDeleteCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsDeleteCall) Context 

func (c *AnnotationsDeleteCall) Context(ctx context.Context) *AnnotationsDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsDeleteCall) Do 

func (c *AnnotationsDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.annotations.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsDeleteCall) Fields 

func (c *AnnotationsDeleteCall) Fields(s ...googleapi.Field) *AnnotationsDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsDeleteCall) Header 

func (c *AnnotationsDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type AnnotationsGetCall 

type AnnotationsGetCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsGetCall) Context 

func (c *AnnotationsGetCall) Context(ctx context.Context) *AnnotationsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsGetCall) Do 

func (c *AnnotationsGetCall) Do(opts ...googleapi.CallOption) (*Annotation, error)

Do executes the "genomics.annotations.get" call. Exactly one of *Annotation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Annotation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsGetCall) Fields 

func (c *AnnotationsGetCall) Fields(s ...googleapi.Field) *AnnotationsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsGetCall) Header 

func (c *AnnotationsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*AnnotationsGetCall) IfNoneMatch 

func (c *AnnotationsGetCall) IfNoneMatch(entityTag string) *AnnotationsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type AnnotationsSearchCall 

type AnnotationsSearchCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsSearchCall) Context 

func (c *AnnotationsSearchCall) Context(ctx context.Context) *AnnotationsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsSearchCall) Do 

func (c *AnnotationsSearchCall) Do(opts ...googleapi.CallOption) (*SearchAnnotationsResponse, error)

Do executes the "genomics.annotations.search" call. Exactly one of *SearchAnnotationsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchAnnotationsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsSearchCall) Fields 

func (c *AnnotationsSearchCall) Fields(s ...googleapi.Field) *AnnotationsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsSearchCall) Header 

func (c *AnnotationsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*AnnotationsSearchCall) Pages 

func (c *AnnotationsSearchCall) Pages(ctx context.Context, f func(*SearchAnnotationsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type AnnotationsService 

type AnnotationsService struct {
	// contains filtered or unexported fields
}

func NewAnnotationsService 

func NewAnnotationsService(s *Service) *AnnotationsService

func (*AnnotationsService) BatchCreate 

func (r *AnnotationsService) BatchCreate(batchcreateannotationsrequest *BatchCreateAnnotationsRequest) *AnnotationsBatchCreateCall

BatchCreate: Creates one or more new annotations atomically. All annotations must belong to the same annotation set. Caller must have WRITE permission for this annotation set. For optimal performance, batch positionally adjacent annotations together.

If the request has a systemic issue, such as an attempt to write to an inaccessible annotation set, the entire RPC will fail accordingly. For lesser data issues, when possible an error will be isolated to the corresponding batch entry in the response; the remaining well formed annotations will be created normally.

For details on the requirements for each individual annotation resource, see CreateAnnotation.

func (*AnnotationsService) Create 

func (r *AnnotationsService) Create(annotation *Annotation) *AnnotationsCreateCall

Create: Creates a new annotation. Caller must have WRITE permission for the associated annotation set.

The following fields are required:

  • annotationSetId
  • referenceName or referenceId

### Transcripts

For annotations of type TRANSCRIPT, the following fields of transcript must be provided:

* exons.start * exons.end

All other fields may be optionally specified, unless documented as being server-generated (for example, the `id` field). The annotated range must be no longer than 100Mbp (mega base pairs). See the Annotation resource for additional restrictions on each field.

func (*AnnotationsService) Delete 

func (r *AnnotationsService) Delete(annotationId string) *AnnotationsDeleteCall

Delete: Deletes an annotation. Caller must have WRITE permission for the associated annotation set.

func (*AnnotationsService) Get 

func (r *AnnotationsService) Get(annotationId string) *AnnotationsGetCall

Get: Gets an annotation. Caller must have READ permission for the associated annotation set.

func (*AnnotationsService) Search 

func (r *AnnotationsService) Search(searchannotationsrequest *SearchAnnotationsRequest) *AnnotationsSearchCall

Search: Searches for annotations that match the given criteria. Results are ordered by genomic coordinate (by reference sequence, then position). Annotations with equivalent genomic coordinates are returned in an unspecified order. This order is consistent, such that two queries for the same content (regardless of page size) yield annotations in the same order across their respective streams of paginated responses. Caller must have READ permission for the queried annotation sets.

func (*AnnotationsService) Update 

func (r *AnnotationsService) Update(annotationId string, annotation *Annotation) *AnnotationsUpdateCall

Update: Updates an annotation. Caller must have WRITE permission for the associated dataset.

type AnnotationsUpdateCall 

type AnnotationsUpdateCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsUpdateCall) Context 

func (c *AnnotationsUpdateCall) Context(ctx context.Context) *AnnotationsUpdateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsUpdateCall) Do 

func (c *AnnotationsUpdateCall) Do(opts ...googleapi.CallOption) (*Annotation, error)

Do executes the "genomics.annotations.update" call. Exactly one of *Annotation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Annotation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsUpdateCall) Fields 

func (c *AnnotationsUpdateCall) Fields(s ...googleapi.Field) *AnnotationsUpdateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsUpdateCall) Header 

func (c *AnnotationsUpdateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*AnnotationsUpdateCall) UpdateMask 

func (c *AnnotationsUpdateCall) UpdateMask(updateMask string) *AnnotationsUpdateCall

UpdateMask sets the optional parameter "updateMask": An optional mask specifying which fields to update. Mutable fields are name, variant, transcript, and info. If unspecified, all mutable fields will be updated.

type AnnotationsetsCreateCall 

type AnnotationsetsCreateCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsetsCreateCall) Context 

func (c *AnnotationsetsCreateCall) Context(ctx context.Context) *AnnotationsetsCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsetsCreateCall) Do 

func (c *AnnotationsetsCreateCall) Do(opts ...googleapi.CallOption) (*AnnotationSet, error)

Do executes the "genomics.annotationsets.create" call. Exactly one of *AnnotationSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *AnnotationSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsetsCreateCall) Fields 

func (c *AnnotationsetsCreateCall) Fields(s ...googleapi.Field) *AnnotationsetsCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsetsCreateCall) Header 

func (c *AnnotationsetsCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type AnnotationsetsDeleteCall 

type AnnotationsetsDeleteCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsetsDeleteCall) Context 

func (c *AnnotationsetsDeleteCall) Context(ctx context.Context) *AnnotationsetsDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsetsDeleteCall) Do 

func (c *AnnotationsetsDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.annotationsets.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsetsDeleteCall) Fields 

func (c *AnnotationsetsDeleteCall) Fields(s ...googleapi.Field) *AnnotationsetsDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsetsDeleteCall) Header 

func (c *AnnotationsetsDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type AnnotationsetsGetCall 

type AnnotationsetsGetCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsetsGetCall) Context 

func (c *AnnotationsetsGetCall) Context(ctx context.Context) *AnnotationsetsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsetsGetCall) Do 

func (c *AnnotationsetsGetCall) Do(opts ...googleapi.CallOption) (*AnnotationSet, error)

Do executes the "genomics.annotationsets.get" call. Exactly one of *AnnotationSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *AnnotationSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsetsGetCall) Fields 

func (c *AnnotationsetsGetCall) Fields(s ...googleapi.Field) *AnnotationsetsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsetsGetCall) Header 

func (c *AnnotationsetsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*AnnotationsetsGetCall) IfNoneMatch 

func (c *AnnotationsetsGetCall) IfNoneMatch(entityTag string) *AnnotationsetsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type AnnotationsetsSearchCall 

type AnnotationsetsSearchCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsetsSearchCall) Context 

func (c *AnnotationsetsSearchCall) Context(ctx context.Context) *AnnotationsetsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsetsSearchCall) Do 

func (c *AnnotationsetsSearchCall) Do(opts ...googleapi.CallOption) (*SearchAnnotationSetsResponse, error)

Do executes the "genomics.annotationsets.search" call. Exactly one of *SearchAnnotationSetsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchAnnotationSetsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsetsSearchCall) Fields 

func (c *AnnotationsetsSearchCall) Fields(s ...googleapi.Field) *AnnotationsetsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsetsSearchCall) Header 

func (c *AnnotationsetsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*AnnotationsetsSearchCall) Pages 

func (c *AnnotationsetsSearchCall) Pages(ctx context.Context, f func(*SearchAnnotationSetsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type AnnotationsetsService 

type AnnotationsetsService struct {
	// contains filtered or unexported fields
}

func NewAnnotationsetsService 

func NewAnnotationsetsService(s *Service) *AnnotationsetsService

func (*AnnotationsetsService) Create 

func (r *AnnotationsetsService) Create(annotationset *AnnotationSet) *AnnotationsetsCreateCall

Create: Creates a new annotation set. Caller must have WRITE permission for the associated dataset.

The following fields are required:

  • datasetId
  • referenceSetId

All other fields may be optionally specified, unless documented as being server-generated (for example, the `id` field).

func (*AnnotationsetsService) Delete 

func (r *AnnotationsetsService) Delete(annotationSetId string) *AnnotationsetsDeleteCall

Delete: Deletes an annotation set. Caller must have WRITE permission for the associated annotation set.

func (*AnnotationsetsService) Get 

func (r *AnnotationsetsService) Get(annotationSetId string) *AnnotationsetsGetCall

Get: Gets an annotation set. Caller must have READ permission for the associated dataset.

func (*AnnotationsetsService) Search 

func (r *AnnotationsetsService) Search(searchannotationsetsrequest *SearchAnnotationSetsRequest) *AnnotationsetsSearchCall

Search: Searches for annotation sets that match the given criteria. Annotation sets are returned in an unspecified order. This order is consistent, such that two queries for the same content (regardless of page size) yield annotation sets in the same order across their respective streams of paginated responses. Caller must have READ permission for the queried datasets.

func (*AnnotationsetsService) Update 

func (r *AnnotationsetsService) Update(annotationSetId string, annotationset *AnnotationSet) *AnnotationsetsUpdateCall

Update: Updates an annotation set. The update must respect all mutability restrictions and other invariants described on the annotation set resource. Caller must have WRITE permission for the associated dataset.

type AnnotationsetsUpdateCall 

type AnnotationsetsUpdateCall struct {
	// contains filtered or unexported fields
}

func (*AnnotationsetsUpdateCall) Context 

func (c *AnnotationsetsUpdateCall) Context(ctx context.Context) *AnnotationsetsUpdateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*AnnotationsetsUpdateCall) Do 

func (c *AnnotationsetsUpdateCall) Do(opts ...googleapi.CallOption) (*AnnotationSet, error)

Do executes the "genomics.annotationsets.update" call. Exactly one of *AnnotationSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *AnnotationSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*AnnotationsetsUpdateCall) Fields 

func (c *AnnotationsetsUpdateCall) Fields(s ...googleapi.Field) *AnnotationsetsUpdateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*AnnotationsetsUpdateCall) Header 

func (c *AnnotationsetsUpdateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*AnnotationsetsUpdateCall) UpdateMask 

func (c *AnnotationsetsUpdateCall) UpdateMask(updateMask string) *AnnotationsetsUpdateCall

UpdateMask sets the optional parameter "updateMask": An optional mask specifying which fields to update. Mutable fields are name, source_uri, and info. If unspecified, all mutable fields will be updated.

type BatchCreateAnnotationsRequest 

type BatchCreateAnnotationsRequest struct {
	// Annotations: The annotations to be created. At most 4096 can be
	// specified in a single
	// request.
	Annotations []*Annotation `json:"annotations,omitempty"`

	// RequestId: A unique request ID which enables the server to detect
	// duplicated requests.
	// If provided, duplicated requests will result in the same response; if
	// not
	// provided, duplicated requests may result in duplicated data. For a
	// given
	// annotation set, callers should not reuse `request_id`s when
	// writing
	// different batches of annotations - behavior in this case is
	// undefined.
	// A common approach is to use a UUID. For batch jobs where worker
	// crashes are
	// a possibility, consider using some unique variant of a worker or run
	// ID.
	RequestId string `json:"requestId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Annotations") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Annotations") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*BatchCreateAnnotationsRequest) MarshalJSON 

func (s *BatchCreateAnnotationsRequest) MarshalJSON() ([]byte, error)

type BatchCreateAnnotationsResponse 

type BatchCreateAnnotationsResponse struct {
	// Entries: The resulting per-annotation entries, ordered consistently
	// with the
	// original request.
	Entries []*Entry `json:"entries,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Entries") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Entries") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*BatchCreateAnnotationsResponse) MarshalJSON 

func (s *BatchCreateAnnotationsResponse) MarshalJSON() ([]byte, error)

type Binding 

type Binding struct {
	// Members: Specifies the identities requesting access for a Cloud
	// Platform resource.
	// `members` can have the following values:
	//
	// * `allUsers`: A special identifier that represents anyone who is
	//    on the internet; with or without a Google account.
	//
	// * `allAuthenticatedUsers`: A special identifier that represents
	// anyone
	//    who is authenticated with a Google account or a service
	// account.
	//
	// * `user:{emailid}`: An email address that represents a specific
	// Google
	//    account. For example, `alice@gmail.com` or `joe@example.com`.
	//
	//
	// * `serviceAccount:{emailid}`: An email address that represents a
	// service
	//    account. For example,
	// `my-other-app@appspot.gserviceaccount.com`.
	//
	// * `group:{emailid}`: An email address that represents a Google
	// group.
	//    For example, `admins@example.com`.
	//
	// * `domain:{domain}`: A Google Apps domain name that represents all
	// the
	//    users of that domain. For example, `google.com` or
	// `example.com`.
	//
	//
	Members []string `json:"members,omitempty"`

	// Role: Role that is assigned to `members`.
	// For example, `roles/viewer`, `roles/editor`, or
	// `roles/owner`.
	// Required
	Role string `json:"role,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Members") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Members") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Binding: Associates `members` with a `role`.

func (*Binding) MarshalJSON 

func (s *Binding) MarshalJSON() ([]byte, error)

type CallSet 

type CallSet struct {
	// Created: The date this call set was created in milliseconds from the
	// epoch.
	Created int64 `json:"created,omitempty,string"`

	// Id: The server-generated call set ID, unique across all call sets.
	Id string `json:"id,omitempty"`

	// Info: A map of additional call set information. This must be of the
	// form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// Name: The call set name.
	Name string `json:"name,omitempty"`

	// SampleId: The sample ID this call set corresponds to.
	SampleId string `json:"sampleId,omitempty"`

	// VariantSetIds: The IDs of the variant sets this call set belongs to.
	// This field must
	// have exactly length one, as a call set belongs to a single variant
	// set.
	// This field is repeated for compatibility with the
	// [GA4GH
	// 0.5.1
	// API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resou
	// rces/avro/variants.avdl#L76).
	VariantSetIds []string `json:"variantSetIds,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Created") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Created") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

CallSet: A call set is a collection of variant calls, typically for one sample. It belongs to a variant set.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*CallSet) MarshalJSON 

func (s *CallSet) MarshalJSON() ([]byte, error)

type CallsetsCreateCall 

type CallsetsCreateCall struct {
	// contains filtered or unexported fields
}

func (*CallsetsCreateCall) Context 

func (c *CallsetsCreateCall) Context(ctx context.Context) *CallsetsCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*CallsetsCreateCall) Do 

func (c *CallsetsCreateCall) Do(opts ...googleapi.CallOption) (*CallSet, error)

Do executes the "genomics.callsets.create" call. Exactly one of *CallSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *CallSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*CallsetsCreateCall) Fields 

func (c *CallsetsCreateCall) Fields(s ...googleapi.Field) *CallsetsCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*CallsetsCreateCall) Header 

func (c *CallsetsCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type CallsetsDeleteCall 

type CallsetsDeleteCall struct {
	// contains filtered or unexported fields
}

func (*CallsetsDeleteCall) Context 

func (c *CallsetsDeleteCall) Context(ctx context.Context) *CallsetsDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*CallsetsDeleteCall) Do 

func (c *CallsetsDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.callsets.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*CallsetsDeleteCall) Fields 

func (c *CallsetsDeleteCall) Fields(s ...googleapi.Field) *CallsetsDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*CallsetsDeleteCall) Header 

func (c *CallsetsDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type CallsetsGetCall 

type CallsetsGetCall struct {
	// contains filtered or unexported fields
}

func (*CallsetsGetCall) Context 

func (c *CallsetsGetCall) Context(ctx context.Context) *CallsetsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*CallsetsGetCall) Do 

func (c *CallsetsGetCall) Do(opts ...googleapi.CallOption) (*CallSet, error)

Do executes the "genomics.callsets.get" call. Exactly one of *CallSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *CallSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*CallsetsGetCall) Fields 

func (c *CallsetsGetCall) Fields(s ...googleapi.Field) *CallsetsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*CallsetsGetCall) Header 

func (c *CallsetsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*CallsetsGetCall) IfNoneMatch 

func (c *CallsetsGetCall) IfNoneMatch(entityTag string) *CallsetsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type CallsetsPatchCall 

type CallsetsPatchCall struct {
	// contains filtered or unexported fields
}

func (*CallsetsPatchCall) Context 

func (c *CallsetsPatchCall) Context(ctx context.Context) *CallsetsPatchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*CallsetsPatchCall) Do 

func (c *CallsetsPatchCall) Do(opts ...googleapi.CallOption) (*CallSet, error)

Do executes the "genomics.callsets.patch" call. Exactly one of *CallSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *CallSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*CallsetsPatchCall) Fields 

func (c *CallsetsPatchCall) Fields(s ...googleapi.Field) *CallsetsPatchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*CallsetsPatchCall) Header 

func (c *CallsetsPatchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*CallsetsPatchCall) UpdateMask 

func (c *CallsetsPatchCall) UpdateMask(updateMask string) *CallsetsPatchCall

UpdateMask sets the optional parameter "updateMask": An optional mask specifying which fields to update. At this time, the only mutable field is name. The only acceptable value is "name". If unspecified, all mutable fields will be updated.

type CallsetsSearchCall 

type CallsetsSearchCall struct {
	// contains filtered or unexported fields
}

func (*CallsetsSearchCall) Context 

func (c *CallsetsSearchCall) Context(ctx context.Context) *CallsetsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*CallsetsSearchCall) Do 

func (c *CallsetsSearchCall) Do(opts ...googleapi.CallOption) (*SearchCallSetsResponse, error)

Do executes the "genomics.callsets.search" call. Exactly one of *SearchCallSetsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchCallSetsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*CallsetsSearchCall) Fields 

func (c *CallsetsSearchCall) Fields(s ...googleapi.Field) *CallsetsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*CallsetsSearchCall) Header 

func (c *CallsetsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*CallsetsSearchCall) Pages 

func (c *CallsetsSearchCall) Pages(ctx context.Context, f func(*SearchCallSetsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type CallsetsService 

type CallsetsService struct {
	// contains filtered or unexported fields
}

func NewCallsetsService 

func NewCallsetsService(s *Service) *CallsetsService

func (*CallsetsService) Create 

func (r *CallsetsService) Create(callset *CallSet) *CallsetsCreateCall

Create: Creates a new call set.

For the definitions of call sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*CallsetsService) Delete 

func (r *CallsetsService) Delete(callSetId string) *CallsetsDeleteCall

Delete: Deletes a call set.

For the definitions of call sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*CallsetsService) Get 

func (r *CallsetsService) Get(callSetId string) *CallsetsGetCall

Get: Gets a call set by ID.

For the definitions of call sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*CallsetsService) Patch 

func (r *CallsetsService) Patch(callSetId string, callset *CallSet) *CallsetsPatchCall

Patch: Updates a call set.

For the definitions of call sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

This method supports patch semantics.

func (*CallsetsService) Search 

func (r *CallsetsService) Search(searchcallsetsrequest *SearchCallSetsRequest) *CallsetsSearchCall

Search: Gets a list of call sets matching the criteria.

For the definitions of call sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.searchCallSets](https://g ithub.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmet hods.avdl#L178).

type CancelOperationRequest 

type CancelOperationRequest struct {
}

CancelOperationRequest: The request message for Operations.CancelOperation.

type CigarUnit 

type CigarUnit struct {
	// Possible values:
	//   "OPERATION_UNSPECIFIED"
	//   "ALIGNMENT_MATCH" - An alignment match indicates that a sequence
	// can be aligned to the
	// reference without evidence of an INDEL. Unlike the
	// `SEQUENCE_MATCH` and `SEQUENCE_MISMATCH` operators,
	// the `ALIGNMENT_MATCH` operator does not indicate whether
	// the
	// reference and read sequences are an exact match. This operator
	// is
	// equivalent to SAM's `M`.
	//   "INSERT" - The insert operator indicates that the read contains
	// evidence of bases
	// being inserted into the reference. This operator is equivalent to
	// SAM's
	// `I`.
	//   "DELETE" - The delete operator indicates that the read contains
	// evidence of bases
	// being deleted from the reference. This operator is equivalent to
	// SAM's
	// `D`.
	//   "SKIP" - The skip operator indicates that this read skips a long
	// segment of the
	// reference, but the bases have not been deleted. This operator is
	// commonly
	// used when working with RNA-seq data, where reads may skip long
	// segments
	// of the reference between exons. This operator is equivalent to
	// SAM's
	// `N`.
	//   "CLIP_SOFT" - The soft clip operator indicates that bases at the
	// start/end of a read
	// have not been considered during alignment. This may occur if the
	// majority
	// of a read maps, except for low quality bases at the start/end of a
	// read.
	// This operator is equivalent to SAM's `S`. Bases that are soft
	// clipped will still be stored in the read.
	//   "CLIP_HARD" - The hard clip operator indicates that bases at the
	// start/end of a read
	// have been omitted from this alignment. This may occur if this
	// linear
	// alignment is part of a chimeric alignment, or if the read has
	// been
	// trimmed (for example, during error correction or to trim poly-A tails
	// for
	// RNA-seq). This operator is equivalent to SAM's `H`.
	//   "PAD" - The pad operator indicates that there is padding in an
	// alignment. This
	// operator is equivalent to SAM's `P`.
	//   "SEQUENCE_MATCH" - This operator indicates that this portion of the
	// aligned sequence exactly
	// matches the reference. This operator is equivalent to SAM's `=`.
	//   "SEQUENCE_MISMATCH" - This operator indicates that this portion of
	// the aligned sequence is an
	// alignment match to the reference, but a sequence mismatch. This
	// can
	// indicate a SNP or a read error. This operator is equivalent to
	// SAM's
	// `X`.
	Operation string `json:"operation,omitempty"`

	// OperationLength: The number of genomic bases that the operation runs
	// for. Required.
	OperationLength int64 `json:"operationLength,omitempty,string"`

	// ReferenceSequence: `referenceSequence` is only used at
	// mismatches
	// (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
	// Filling this field replaces SAM's MD tag. If the relevant information
	// is
	// not available, this field is unset.
	ReferenceSequence string `json:"referenceSequence,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Operation") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Operation") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

CigarUnit: A single CIGAR operation.

func (*CigarUnit) MarshalJSON 

func (s *CigarUnit) MarshalJSON() ([]byte, error)

type ClinicalCondition 

type ClinicalCondition struct {
	// ConceptId: The MedGen concept id associated with this gene.
	// Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
	ConceptId string `json:"conceptId,omitempty"`

	// ExternalIds: The set of external IDs for this condition.
	ExternalIds []*ExternalId `json:"externalIds,omitempty"`

	// Names: A set of names for the condition.
	Names []string `json:"names,omitempty"`

	// OmimId: The OMIM id for this condition.
	// Search for these IDs at http://omim.org/
	OmimId string `json:"omimId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ConceptId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ConceptId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*ClinicalCondition) MarshalJSON 

func (s *ClinicalCondition) MarshalJSON() ([]byte, error)

type CodingSequence 

type CodingSequence struct {
	// End: The end of the coding sequence on this annotation's reference
	// sequence,
	// 0-based exclusive. Note that this position is relative to the
	// reference
	// start, and *not* the containing annotation start.
	End int64 `json:"end,omitempty,string"`

	// Start: The start of the coding sequence on this annotation's
	// reference sequence,
	// 0-based inclusive. Note that this position is relative to the
	// reference
	// start, and *not* the containing annotation start.
	Start int64 `json:"start,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "End") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "End") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*CodingSequence) MarshalJSON 

func (s *CodingSequence) MarshalJSON() ([]byte, error)

type ComputeEngine 

type ComputeEngine struct {
	// DiskNames: The names of the disks that were created for this
	// pipeline.
	DiskNames []string `json:"diskNames,omitempty"`

	// InstanceName: The instance on which the operation is running.
	InstanceName string `json:"instanceName,omitempty"`

	// MachineType: The machine type of the instance.
	MachineType string `json:"machineType,omitempty"`

	// Zone: The availability zone in which the instance resides.
	Zone string `json:"zone,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DiskNames") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DiskNames") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ComputeEngine: Describes a Compute Engine resource that is being managed by a running pipeline.

func (*ComputeEngine) MarshalJSON 

func (s *ComputeEngine) MarshalJSON() ([]byte, error)

type CoverageBucket 

type CoverageBucket struct {
	// MeanCoverage: The average number of reads which are aligned to each
	// individual
	// reference base in this bucket.
	MeanCoverage float64 `json:"meanCoverage,omitempty"`

	// Range: The genomic coordinate range spanned by this bucket.
	Range *Range `json:"range,omitempty"`

	// ForceSendFields is a list of field names (e.g. "MeanCoverage") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "MeanCoverage") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

CoverageBucket: A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.

func (*CoverageBucket) MarshalJSON 

func (s *CoverageBucket) MarshalJSON() ([]byte, error)

func (*CoverageBucket) UnmarshalJSON 

func (s *CoverageBucket) UnmarshalJSON(data []byte) error

type Dataset 

type Dataset struct {
	// CreateTime: The time this dataset was created, in seconds from the
	// epoch.
	CreateTime string `json:"createTime,omitempty"`

	// Id: The server-generated dataset ID, unique across all datasets.
	Id string `json:"id,omitempty"`

	// Name: The dataset name.
	Name string `json:"name,omitempty"`

	// ProjectId: The Google Cloud project ID that this dataset belongs to.
	ProjectId string `json:"projectId,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "CreateTime") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CreateTime") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Dataset: A Dataset is a collection of genomic data.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*Dataset) MarshalJSON 

func (s *Dataset) MarshalJSON() ([]byte, error)

type DatasetsCreateCall 

type DatasetsCreateCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsCreateCall) Context 

func (c *DatasetsCreateCall) Context(ctx context.Context) *DatasetsCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsCreateCall) Do 

func (c *DatasetsCreateCall) Do(opts ...googleapi.CallOption) (*Dataset, error)

Do executes the "genomics.datasets.create" call. Exactly one of *Dataset or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Dataset.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsCreateCall) Fields 

func (c *DatasetsCreateCall) Fields(s ...googleapi.Field) *DatasetsCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsCreateCall) Header 

func (c *DatasetsCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type DatasetsDeleteCall 

type DatasetsDeleteCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsDeleteCall) Context 

func (c *DatasetsDeleteCall) Context(ctx context.Context) *DatasetsDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsDeleteCall) Do 

func (c *DatasetsDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.datasets.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsDeleteCall) Fields 

func (c *DatasetsDeleteCall) Fields(s ...googleapi.Field) *DatasetsDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsDeleteCall) Header 

func (c *DatasetsDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type DatasetsGetCall 

type DatasetsGetCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsGetCall) Context 

func (c *DatasetsGetCall) Context(ctx context.Context) *DatasetsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsGetCall) Do 

func (c *DatasetsGetCall) Do(opts ...googleapi.CallOption) (*Dataset, error)

Do executes the "genomics.datasets.get" call. Exactly one of *Dataset or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Dataset.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsGetCall) Fields 

func (c *DatasetsGetCall) Fields(s ...googleapi.Field) *DatasetsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsGetCall) Header 

func (c *DatasetsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*DatasetsGetCall) IfNoneMatch 

func (c *DatasetsGetCall) IfNoneMatch(entityTag string) *DatasetsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type DatasetsGetIamPolicyCall 

type DatasetsGetIamPolicyCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsGetIamPolicyCall) Context 

func (c *DatasetsGetIamPolicyCall) Context(ctx context.Context) *DatasetsGetIamPolicyCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsGetIamPolicyCall) Do 

func (c *DatasetsGetIamPolicyCall) Do(opts ...googleapi.CallOption) (*Policy, error)

Do executes the "genomics.datasets.getIamPolicy" call. Exactly one of *Policy or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Policy.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsGetIamPolicyCall) Fields 

func (c *DatasetsGetIamPolicyCall) Fields(s ...googleapi.Field) *DatasetsGetIamPolicyCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsGetIamPolicyCall) Header 

func (c *DatasetsGetIamPolicyCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type DatasetsListCall 

type DatasetsListCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsListCall) Context 

func (c *DatasetsListCall) Context(ctx context.Context) *DatasetsListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsListCall) Do 

func (c *DatasetsListCall) Do(opts ...googleapi.CallOption) (*ListDatasetsResponse, error)

Do executes the "genomics.datasets.list" call. Exactly one of *ListDatasetsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListDatasetsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsListCall) Fields 

func (c *DatasetsListCall) Fields(s ...googleapi.Field) *DatasetsListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsListCall) Header 

func (c *DatasetsListCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*DatasetsListCall) IfNoneMatch 

func (c *DatasetsListCall) IfNoneMatch(entityTag string) *DatasetsListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*DatasetsListCall) PageSize 

func (c *DatasetsListCall) PageSize(pageSize int64) *DatasetsListCall

PageSize sets the optional parameter "pageSize": The maximum number of results to return in a single page. If unspecified, defaults to 50. The maximum value is 1024.

func (*DatasetsListCall) PageToken 

func (c *DatasetsListCall) PageToken(pageToken string) *DatasetsListCall

PageToken sets the optional parameter "pageToken": The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

func (*DatasetsListCall) Pages 

func (c *DatasetsListCall) Pages(ctx context.Context, f func(*ListDatasetsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

func (*DatasetsListCall) ProjectId 

func (c *DatasetsListCall) ProjectId(projectId string) *DatasetsListCall

ProjectId sets the optional parameter "projectId": Required. The Google Cloud project ID to list datasets for.

type DatasetsPatchCall 

type DatasetsPatchCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsPatchCall) Context 

func (c *DatasetsPatchCall) Context(ctx context.Context) *DatasetsPatchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsPatchCall) Do 

func (c *DatasetsPatchCall) Do(opts ...googleapi.CallOption) (*Dataset, error)

Do executes the "genomics.datasets.patch" call. Exactly one of *Dataset or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Dataset.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsPatchCall) Fields 

func (c *DatasetsPatchCall) Fields(s ...googleapi.Field) *DatasetsPatchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsPatchCall) Header 

func (c *DatasetsPatchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*DatasetsPatchCall) UpdateMask 

func (c *DatasetsPatchCall) UpdateMask(updateMask string) *DatasetsPatchCall

UpdateMask sets the optional parameter "updateMask": An optional mask specifying which fields to update. At this time, the only mutable field is name. The only acceptable value is "name". If unspecified, all mutable fields will be updated.

type DatasetsService 

type DatasetsService struct {
	// contains filtered or unexported fields
}

func NewDatasetsService 

func NewDatasetsService(s *Service) *DatasetsService

func (*DatasetsService) Create 

func (r *DatasetsService) Create(dataset *Dataset) *DatasetsCreateCall

Create: Creates a new dataset.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*DatasetsService) Delete 

func (r *DatasetsService) Delete(datasetId string) *DatasetsDeleteCall

Delete: Deletes a dataset and all of its contents (all read group sets, reference sets, variant sets, call sets, annotation sets, etc.) This is reversible (up to one week after the deletion) via the datasets.undelete operation.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*DatasetsService) Get 

func (r *DatasetsService) Get(datasetId string) *DatasetsGetCall

Get: Gets a dataset by ID.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*DatasetsService) GetIamPolicy 

func (r *DatasetsService) GetIamPolicy(resource string, getiampolicyrequest *GetIamPolicyRequest) *DatasetsGetIamPolicyCall

GetIamPolicy: Gets the access control policy for the dataset. This is empty if the policy or resource does not exist.

See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a Policy</a> for more information.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*DatasetsService) List 

func (r *DatasetsService) List() *DatasetsListCall

List: Lists datasets within a project.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*DatasetsService) Patch 

func (r *DatasetsService) Patch(datasetId string, dataset *Dataset) *DatasetsPatchCall

Patch: Updates a dataset.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

This method supports patch semantics.

func (*DatasetsService) SetIamPolicy 

func (r *DatasetsService) SetIamPolicy(resource string, setiampolicyrequest *SetIamPolicyRequest) *DatasetsSetIamPolicyCall

SetIamPolicy: Sets the access control policy on the specified dataset. Replaces any existing policy.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a Policy</a> for more information.

func (*DatasetsService) TestIamPermissions 

func (r *DatasetsService) TestIamPermissions(resource string, testiampermissionsrequest *TestIamPermissionsRequest) *DatasetsTestIamPermissionsCall

TestIamPermissions: Returns permissions that a caller has on the specified resource. See <a href="/iam/docs/managing-policies#testing_permissions">Testing Permiss ions</a> for more information.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*DatasetsService) Undelete 

func (r *DatasetsService) Undelete(datasetId string, undeletedatasetrequest *UndeleteDatasetRequest) *DatasetsUndeleteCall

Undelete: Undeletes a dataset by restoring a dataset which was deleted via this API.

For the definitions of datasets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

This operation is only possible for a week after the deletion occurred.

type DatasetsSetIamPolicyCall 

type DatasetsSetIamPolicyCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsSetIamPolicyCall) Context 

func (c *DatasetsSetIamPolicyCall) Context(ctx context.Context) *DatasetsSetIamPolicyCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsSetIamPolicyCall) Do 

func (c *DatasetsSetIamPolicyCall) Do(opts ...googleapi.CallOption) (*Policy, error)

Do executes the "genomics.datasets.setIamPolicy" call. Exactly one of *Policy or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Policy.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsSetIamPolicyCall) Fields 

func (c *DatasetsSetIamPolicyCall) Fields(s ...googleapi.Field) *DatasetsSetIamPolicyCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsSetIamPolicyCall) Header 

func (c *DatasetsSetIamPolicyCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type DatasetsTestIamPermissionsCall 

type DatasetsTestIamPermissionsCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsTestIamPermissionsCall) Context 

func (c *DatasetsTestIamPermissionsCall) Context(ctx context.Context) *DatasetsTestIamPermissionsCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsTestIamPermissionsCall) Do 

func (c *DatasetsTestIamPermissionsCall) Do(opts ...googleapi.CallOption) (*TestIamPermissionsResponse, error)

Do executes the "genomics.datasets.testIamPermissions" call. Exactly one of *TestIamPermissionsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *TestIamPermissionsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsTestIamPermissionsCall) Fields 

func (c *DatasetsTestIamPermissionsCall) Fields(s ...googleapi.Field) *DatasetsTestIamPermissionsCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsTestIamPermissionsCall) Header 

func (c *DatasetsTestIamPermissionsCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type DatasetsUndeleteCall 

type DatasetsUndeleteCall struct {
	// contains filtered or unexported fields
}

func (*DatasetsUndeleteCall) Context 

func (c *DatasetsUndeleteCall) Context(ctx context.Context) *DatasetsUndeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*DatasetsUndeleteCall) Do 

func (c *DatasetsUndeleteCall) Do(opts ...googleapi.CallOption) (*Dataset, error)

Do executes the "genomics.datasets.undelete" call. Exactly one of *Dataset or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Dataset.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*DatasetsUndeleteCall) Fields 

func (c *DatasetsUndeleteCall) Fields(s ...googleapi.Field) *DatasetsUndeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*DatasetsUndeleteCall) Header 

func (c *DatasetsUndeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type Empty 

type Empty struct {
	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`
}

Empty: A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance: 

service Foo {
  rpc Bar(google.protobuf.Empty) returns

(google.protobuf.Empty); 

}

The JSON representation for `Empty` is empty JSON object `{}`.

type Entry 

type Entry struct {
	// Annotation: The created annotation, if creation was successful.
	Annotation *Annotation `json:"annotation,omitempty"`

	// Status: The creation status.
	Status *Status `json:"status,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Annotation") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Annotation") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*Entry) MarshalJSON 

func (s *Entry) MarshalJSON() ([]byte, error)

type Exon 

type Exon struct {
	// End: The end position of the exon on this annotation's reference
	// sequence,
	// 0-based exclusive. Note that this is relative to the reference start,
	// and
	// *not* the containing annotation start.
	End int64 `json:"end,omitempty,string"`

	// Frame: The frame of this exon. Contains a value of 0, 1, or 2, which
	// indicates
	// the offset of the first coding base of the exon within the reading
	// frame
	// of the coding DNA sequence, if any. This field is dependent on
	// the
	// strandedness of this annotation (see
	// Annotation.reverse_strand).
	// For forward stranded annotations, this offset is relative to
	// the
	// exon.start. For reverse
	// strand annotations, this offset is relative to the
	// exon.end `- 1`.
	//
	// Unset if this exon does not intersect the coding sequence. Upon
	// creation
	// of a transcript, the frame must be populated for all or none of
	// the
	// coding exons.
	Frame int64 `json:"frame,omitempty"`

	// Start: The start position of the exon on this annotation's reference
	// sequence,
	// 0-based inclusive. Note that this is relative to the reference start,
	// and
	// **not** the containing annotation start.
	Start int64 `json:"start,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "End") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "End") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*Exon) MarshalJSON 

func (s *Exon) MarshalJSON() ([]byte, error)

type Experiment 

type Experiment struct {
	// InstrumentModel: The instrument model used as part of this
	// experiment. This maps to
	// sequencing technology in the SAM spec.
	InstrumentModel string `json:"instrumentModel,omitempty"`

	// LibraryId: A client-supplied library identifier; a library is a
	// collection of DNA
	// fragments which have been prepared for sequencing from a sample.
	// This
	// field is important for quality control as error or bias can be
	// introduced
	// during sample preparation.
	LibraryId string `json:"libraryId,omitempty"`

	// PlatformUnit: The platform unit used as part of this experiment, for
	// example
	// flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to
	// the
	// @RG PU field in the SAM spec.
	PlatformUnit string `json:"platformUnit,omitempty"`

	// SequencingCenter: The sequencing center used as part of this
	// experiment.
	SequencingCenter string `json:"sequencingCenter,omitempty"`

	// ForceSendFields is a list of field names (e.g. "InstrumentModel") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "InstrumentModel") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

func (*Experiment) MarshalJSON 

func (s *Experiment) MarshalJSON() ([]byte, error)

type ExportReadGroupSetRequest 

type ExportReadGroupSetRequest struct {
	// ExportUri: Required. A Google Cloud Storage URI for the exported BAM
	// file.
	// The currently authenticated user must have write access to the new
	// file.
	// An error will be returned if the URI already contains data.
	ExportUri string `json:"exportUri,omitempty"`

	// ProjectId: Required. The Google Cloud project ID that owns
	// this
	// export. The caller must have WRITE access to this project.
	ProjectId string `json:"projectId,omitempty"`

	// ReferenceNames: The reference names to export. If this is not
	// specified, all reference
	// sequences, including unmapped reads, are exported.
	// Use `*` to export only unmapped reads.
	ReferenceNames []string `json:"referenceNames,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ExportUri") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ExportUri") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ExportReadGroupSetRequest: The read group set export request.

func (*ExportReadGroupSetRequest) MarshalJSON 

func (s *ExportReadGroupSetRequest) MarshalJSON() ([]byte, error)

type ExportVariantSetRequest 

type ExportVariantSetRequest struct {
	// BigqueryDataset: Required. The BigQuery dataset to export data to.
	// This dataset must already
	// exist. Note that this is distinct from the Genomics concept of
	// "dataset".
	BigqueryDataset string `json:"bigqueryDataset,omitempty"`

	// BigqueryTable: Required. The BigQuery table to export data to.
	// If the table doesn't exist, it will be created. If it already exists,
	// it
	// will be overwritten.
	BigqueryTable string `json:"bigqueryTable,omitempty"`

	// CallSetIds: If provided, only variant call information from the
	// specified call sets
	// will be exported. By default all variant calls are exported.
	CallSetIds []string `json:"callSetIds,omitempty"`

	// Format: The format for the exported data.
	//
	// Possible values:
	//   "FORMAT_UNSPECIFIED"
	//   "FORMAT_BIGQUERY" - Export the data to Google BigQuery.
	Format string `json:"format,omitempty"`

	// ProjectId: Required. The Google Cloud project ID that owns the
	// destination
	// BigQuery dataset. The caller must have WRITE access to this project.
	// This
	// project will also own the resulting export job.
	ProjectId string `json:"projectId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "BigqueryDataset") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "BigqueryDataset") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

ExportVariantSetRequest: The variant data export request.

func (*ExportVariantSetRequest) MarshalJSON 

func (s *ExportVariantSetRequest) MarshalJSON() ([]byte, error)

type ExternalId 

type ExternalId struct {
	// Id: The id used by the source of this data.
	Id string `json:"id,omitempty"`

	// SourceName: The name of the source of this data.
	SourceName string `json:"sourceName,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Id") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Id") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*ExternalId) MarshalJSON 

func (s *ExternalId) MarshalJSON() ([]byte, error)

type GetIamPolicyRequest 

type GetIamPolicyRequest struct {
}

GetIamPolicyRequest: Request message for `GetIamPolicy` method.

type ImportReadGroupSetsRequest 

type ImportReadGroupSetsRequest struct {
	// DatasetId: Required. The ID of the dataset these read group sets will
	// belong to. The
	// caller must have WRITE permissions to this dataset.
	DatasetId string `json:"datasetId,omitempty"`

	// PartitionStrategy: The partition strategy describes how read groups
	// are partitioned into read
	// group sets.
	//
	// Possible values:
	//   "PARTITION_STRATEGY_UNSPECIFIED"
	//   "PER_FILE_PER_SAMPLE" - In most cases, this strategy yields one
	// read group set per file. This is
	// the default behavior.
	//
	// Allocate one read group set per file per sample. For BAM files,
	// read
	// groups are considered to share a sample if they have identical
	// sample
	// names. Furthermore, all reads for each file which do not belong to a
	// read
	// group, if any, will be grouped into a single read group set per-file.
	//   "MERGE_ALL" - Includes all read groups in all imported files into a
	// single read group
	// set. Requires that the headers for all imported files are equivalent.
	// All
	// reads which do not belong to a read group, if any, will be grouped
	// into a
	// separate read group set.
	PartitionStrategy string `json:"partitionStrategy,omitempty"`

	// ReferenceSetId: The reference set to which the imported read group
	// sets are aligned to, if
	// any. The reference names of this reference set must be a superset of
	// those
	// found in the imported file headers. If no reference set id is
	// provided, a
	// best effort is made to associate with a matching reference set.
	ReferenceSetId string `json:"referenceSetId,omitempty"`

	// SourceUris: A list of URIs pointing at
	// [BAM
	// files](https://samtools.github.io/hts-specs/SAMv1.pdf)
	// in Google Cloud Storage.
	// Those URIs can include wildcards (*), but do not add or
	// remove
	// matching files before import has completed.
	//
	// Note that Google Cloud Storage object listing is only
	// eventually
	// consistent: files added may be not be immediately visible
	// to
	// everyone. Thus, if using a wildcard it is preferable not to start
	// the import immediately after the files are created.
	SourceUris []string `json:"sourceUris,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DatasetId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ImportReadGroupSetsRequest: The read group set import request.

func (*ImportReadGroupSetsRequest) MarshalJSON 

func (s *ImportReadGroupSetsRequest) MarshalJSON() ([]byte, error)

type ImportReadGroupSetsResponse 

type ImportReadGroupSetsResponse struct {
	// ReadGroupSetIds: IDs of the read group sets that were created.
	ReadGroupSetIds []string `json:"readGroupSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ReadGroupSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ReadGroupSetIds") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

ImportReadGroupSetsResponse: The read group set import response.

func (*ImportReadGroupSetsResponse) MarshalJSON 

func (s *ImportReadGroupSetsResponse) MarshalJSON() ([]byte, error)

type ImportVariantsRequest 

type ImportVariantsRequest struct {
	// Format: The format of the variant data being imported. If
	// unspecified, defaults to
	// to `VCF`.
	//
	// Possible values:
	//   "FORMAT_UNSPECIFIED"
	//   "FORMAT_VCF" - VCF (Variant Call Format). The VCF files may be gzip
	// compressed. gVCF is
	// also supported.
	//   "FORMAT_COMPLETE_GENOMICS" - Complete Genomics masterVarBeta
	// format. The masterVarBeta files may
	// be bzip2 compressed.
	Format string `json:"format,omitempty"`

	// InfoMergeConfig: A mapping between info field keys and the
	// InfoMergeOperations to
	// be performed on them. This is plumbed down to the
	// MergeVariantRequests
	// generated by the resulting import job.
	InfoMergeConfig map[string]string `json:"infoMergeConfig,omitempty"`

	// NormalizeReferenceNames: Convert reference names to the canonical
	// representation.
	// hg19 haploytypes (those reference names containing "_hap")
	// are not modified in any way.
	// All other reference names are modified according to the following
	// rules:
	// The reference name is capitalized.
	// The "chr" prefix is dropped for all autosomes and sex chromsomes.
	// For example "chr17" becomes "17" and "chrX" becomes "X".
	// All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
	NormalizeReferenceNames bool `json:"normalizeReferenceNames,omitempty"`

	// SourceUris: A list of URIs referencing variant files in Google Cloud
	// Storage. URIs can
	// include wildcards [as
	// described
	// here](https://cloud.google.com/storage/docs/gsutil/addlhelp/
	// WildcardNames).
	// Note that recursive wildcards ('**') are not supported.
	SourceUris []string `json:"sourceUris,omitempty"`

	// VariantSetId: Required. The variant set to which variant data should
	// be imported.
	VariantSetId string `json:"variantSetId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Format") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Format") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ImportVariantsRequest: The variant data import request.

func (*ImportVariantsRequest) MarshalJSON 

func (s *ImportVariantsRequest) MarshalJSON() ([]byte, error)

type ImportVariantsResponse 

type ImportVariantsResponse struct {
	// CallSetIds: IDs of the call sets created during the import.
	CallSetIds []string `json:"callSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CallSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CallSetIds") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ImportVariantsResponse: The variant data import response.

func (*ImportVariantsResponse) MarshalJSON 

func (s *ImportVariantsResponse) MarshalJSON() ([]byte, error)

type LinearAlignment 

type LinearAlignment struct {
	// Cigar: Represents the local alignment of this sequence (alignment
	// matches, indels,
	// etc) against the reference.
	Cigar []*CigarUnit `json:"cigar,omitempty"`

	// MappingQuality: The mapping quality of this alignment. Represents how
	// likely
	// the read maps to this position as opposed to other
	// locations.
	//
	// Specifically, this is -10 log10 Pr(mapping position is wrong),
	// rounded to
	// the nearest integer.
	MappingQuality int64 `json:"mappingQuality,omitempty"`

	// Position: The position of this alignment.
	Position *Position `json:"position,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Cigar") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Cigar") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

LinearAlignment: A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

func (*LinearAlignment) MarshalJSON 

func (s *LinearAlignment) MarshalJSON() ([]byte, error)

type ListBasesResponse 

type ListBasesResponse struct {
	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// Offset: The offset position (0-based) of the given `sequence` from
	// the
	// start of this `Reference`. This value will differ for each page
	// in a paginated request.
	Offset int64 `json:"offset,omitempty,string"`

	// Sequence: A substring of the bases that make up this reference.
	Sequence string `json:"sequence,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*ListBasesResponse) MarshalJSON 

func (s *ListBasesResponse) MarshalJSON() ([]byte, error)

type ListCoverageBucketsResponse 

type ListCoverageBucketsResponse struct {
	// BucketWidth: The length of each coverage bucket in base pairs. Note
	// that buckets at the
	// end of a reference sequence may be shorter. This value is omitted if
	// the
	// bucket width is infinity (the default behaviour, with no range
	// or
	// `targetBucketWidth`).
	BucketWidth int64 `json:"bucketWidth,omitempty,string"`

	// CoverageBuckets: The coverage buckets. The list of buckets is sparse;
	// a bucket with 0
	// overlapping reads is not returned. A bucket never crosses more than
	// one
	// reference sequence. Each bucket has width `bucketWidth`, unless
	// its end is the end of the reference sequence.
	CoverageBuckets []*CoverageBucket `json:"coverageBuckets,omitempty"`

	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "BucketWidth") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "BucketWidth") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*ListCoverageBucketsResponse) MarshalJSON 

func (s *ListCoverageBucketsResponse) MarshalJSON() ([]byte, error)

type ListDatasetsResponse 

type ListDatasetsResponse struct {
	// Datasets: The list of matching Datasets.
	Datasets []*Dataset `json:"datasets,omitempty"`

	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Datasets") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Datasets") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ListDatasetsResponse: The dataset list response.

func (*ListDatasetsResponse) MarshalJSON 

func (s *ListDatasetsResponse) MarshalJSON() ([]byte, error)

type ListOperationsResponse 

type ListOperationsResponse struct {
	// NextPageToken: The standard List next-page token.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// Operations: A list of operations that matches the specified filter in
	// the request.
	Operations []*Operation `json:"operations,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ListOperationsResponse: The response message for Operations.ListOperations.

func (*ListOperationsResponse) MarshalJSON 

func (s *ListOperationsResponse) MarshalJSON() ([]byte, error)

type MergeVariantsRequest 

type MergeVariantsRequest struct {
	// InfoMergeConfig: A mapping between info field keys and the
	// InfoMergeOperations to
	// be performed on them.
	InfoMergeConfig map[string]string `json:"infoMergeConfig,omitempty"`

	// VariantSetId: The destination variant set.
	VariantSetId string `json:"variantSetId,omitempty"`

	// Variants: The variants to be merged with existing variants.
	Variants []*Variant `json:"variants,omitempty"`

	// ForceSendFields is a list of field names (e.g. "InfoMergeConfig") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "InfoMergeConfig") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

func (*MergeVariantsRequest) MarshalJSON 

func (s *MergeVariantsRequest) MarshalJSON() ([]byte, error)

type Operation 

type Operation struct {
	// Done: If the value is `false`, it means the operation is still in
	// progress.
	// If true, the operation is completed, and either `error` or `response`
	// is
	// available.
	Done bool `json:"done,omitempty"`

	// Error: The error result of the operation in case of failure or
	// cancellation.
	Error *Status `json:"error,omitempty"`

	// Metadata: An OperationMetadata object. This will always be returned
	// with the Operation.
	Metadata googleapi.RawMessage `json:"metadata,omitempty"`

	// Name: The server-assigned name, which is only unique within the same
	// service that originally returns it. For example&#58;
	// `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
	Name string `json:"name,omitempty"`

	// Response: If importing ReadGroupSets, an ImportReadGroupSetsResponse
	// is returned. If importing Variants, an ImportVariantsResponse is
	// returned. For pipelines and exports, an empty response is returned.
	Response googleapi.RawMessage `json:"response,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Done") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Done") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Operation: This resource represents a long-running operation that is the result of a network API call.

func (*Operation) MarshalJSON 

func (s *Operation) MarshalJSON() ([]byte, error)

type OperationEvent 

type OperationEvent struct {
	// Description: Required description of event.
	Description string `json:"description,omitempty"`

	// EndTime: Optional time of when event finished. An event can have a
	// start time and no
	// finish time. If an event has a finish time, there must be a start
	// time.
	EndTime string `json:"endTime,omitempty"`

	// StartTime: Optional time of when event started.
	StartTime string `json:"startTime,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Description") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Description") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

OperationEvent: An event that occurred during an Operation.

func (*OperationEvent) MarshalJSON 

func (s *OperationEvent) MarshalJSON() ([]byte, error)

type OperationMetadata 

type OperationMetadata struct {
	// ClientId: This field is deprecated. Use `labels` instead. Optionally
	// provided by the
	// caller when submitting the request that creates the operation.
	ClientId string `json:"clientId,omitempty"`

	// CreateTime: The time at which the job was submitted to the Genomics
	// service.
	CreateTime string `json:"createTime,omitempty"`

	// EndTime: The time at which the job stopped running.
	EndTime string `json:"endTime,omitempty"`

	// Events: Optional event messages that were generated during the job's
	// execution.
	// This also contains any warnings that were generated during import
	// or export.
	Events []*OperationEvent `json:"events,omitempty"`

	// Labels: Optionally provided by the caller when submitting the request
	// that creates
	// the operation.
	Labels map[string]string `json:"labels,omitempty"`

	// ProjectId: The Google Cloud Project in which the job is scoped.
	ProjectId string `json:"projectId,omitempty"`

	// Request: The original request that started the operation. Note that
	// this will be in
	// current version of the API. If the operation was started with v1beta2
	// API
	// and a GetOperation is performed on v1 API, a v1 request will be
	// returned.
	Request googleapi.RawMessage `json:"request,omitempty"`

	// RuntimeMetadata: Runtime metadata on this Operation.
	RuntimeMetadata googleapi.RawMessage `json:"runtimeMetadata,omitempty"`

	// StartTime: The time at which the job began to run.
	StartTime string `json:"startTime,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ClientId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ClientId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

OperationMetadata: Metadata describing an Operation.

func (*OperationMetadata) MarshalJSON 

func (s *OperationMetadata) MarshalJSON() ([]byte, error)

type OperationsCancelCall 

type OperationsCancelCall struct {
	// contains filtered or unexported fields
}

func (*OperationsCancelCall) Context 

func (c *OperationsCancelCall) Context(ctx context.Context) *OperationsCancelCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsCancelCall) Do 

func (c *OperationsCancelCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.operations.cancel" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsCancelCall) Fields 

func (c *OperationsCancelCall) Fields(s ...googleapi.Field) *OperationsCancelCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsCancelCall) Header 

func (c *OperationsCancelCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type OperationsGetCall 

type OperationsGetCall struct {
	// contains filtered or unexported fields
}

func (*OperationsGetCall) Context 

func (c *OperationsGetCall) Context(ctx context.Context) *OperationsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsGetCall) Do 

func (c *OperationsGetCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.operations.get" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsGetCall) Fields 

func (c *OperationsGetCall) Fields(s ...googleapi.Field) *OperationsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsGetCall) Header 

func (c *OperationsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*OperationsGetCall) IfNoneMatch 

func (c *OperationsGetCall) IfNoneMatch(entityTag string) *OperationsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type OperationsListCall 

type OperationsListCall struct {
	// contains filtered or unexported fields
}

func (*OperationsListCall) Context 

func (c *OperationsListCall) Context(ctx context.Context) *OperationsListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsListCall) Do 

func (c *OperationsListCall) Do(opts ...googleapi.CallOption) (*ListOperationsResponse, error)

Do executes the "genomics.operations.list" call. Exactly one of *ListOperationsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListOperationsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsListCall) Fields 

func (c *OperationsListCall) Fields(s ...googleapi.Field) *OperationsListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsListCall) Filter 

func (c *OperationsListCall) Filter(filter string) *OperationsListCall

Filter sets the optional parameter "filter": A string for filtering Operations. The following filter fields are supported&#58;

  • projectId&#58; Required. Corresponds to OperationMetadata.projectId.
  • createTime&#58; The time this job was created, in seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=`

and/or `<=` 

operators.

* status&#58; Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `CANCELED`. Only 

one status may be specified.

* labels.key where key is a label key.

Examples&#58;

* `projectId = my-project AND createTime >= 1432140000` * `projectId = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND status = RUNNING` * `projectId = my-project AND labels.color = *` * `projectId = my-project AND labels.color = red`

func (*OperationsListCall) Header 

func (c *OperationsListCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*OperationsListCall) IfNoneMatch 

func (c *OperationsListCall) IfNoneMatch(entityTag string) *OperationsListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*OperationsListCall) PageSize 

func (c *OperationsListCall) PageSize(pageSize int64) *OperationsListCall

PageSize sets the optional parameter "pageSize": The maximum number of results to return. If unspecified, defaults to 256. The maximum value is 2048.

func (*OperationsListCall) PageToken 

func (c *OperationsListCall) PageToken(pageToken string) *OperationsListCall

PageToken sets the optional parameter "pageToken": The standard list page token.

func (*OperationsListCall) Pages 

func (c *OperationsListCall) Pages(ctx context.Context, f func(*ListOperationsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type OperationsService 

type OperationsService struct {
	// contains filtered or unexported fields
}

func NewOperationsService 

func NewOperationsService(s *Service) *OperationsService

func (*OperationsService) Cancel 

func (r *OperationsService) Cancel(name string, canceloperationrequest *CancelOperationRequest) *OperationsCancelCall

Cancel: Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation.

func (*OperationsService) Get 

func (r *OperationsService) Get(name string) *OperationsGetCall

Get: Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service.

func (*OperationsService) List 

func (r *OperationsService) List(name string) *OperationsListCall

List: Lists operations that match the specified filter in the request.

type Policy 

type Policy struct {
	// Bindings: Associates a list of `members` to a `role`.
	// Multiple `bindings` must not be specified for the same
	// `role`.
	// `bindings` with no members will result in an error.
	Bindings []*Binding `json:"bindings,omitempty"`

	// Etag: `etag` is used for optimistic concurrency control as a way to
	// help
	// prevent simultaneous updates of a policy from overwriting each
	// other.
	// It is strongly suggested that systems make use of the `etag` in
	// the
	// read-modify-write cycle to perform policy updates in order to avoid
	// race
	// conditions: An `etag` is returned in the response to `getIamPolicy`,
	// and
	// systems are expected to put that etag in the request to
	// `setIamPolicy` to
	// ensure that their change will be applied to the same version of the
	// policy.
	//
	// If no `etag` is provided in the call to `setIamPolicy`, then the
	// existing
	// policy is overwritten blindly.
	Etag string `json:"etag,omitempty"`

	// Version: Version of the `Policy`. The default version is 0.
	Version int64 `json:"version,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Bindings") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Bindings") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Policy: Defines an Identity and Access Management (IAM) policy. It is used to specify access control policies for Cloud Platform resources.

A `Policy` consists of a list of `bindings`. A `Binding` binds a list of `members` to a `role`, where the members can be user accounts, Google groups, Google domains, and service accounts. A `role` is a named list of permissions defined by IAM.

**Example** 

{
  "bindings": [
    {
      "role": "roles/owner",
      "members": [
        "user:mike@example.com",
        "group:admins@example.com",
        "domain:google.com",

"serviceAccount:my-other-app@appspot.gserviceaccount.com", 

      ]
    },
    {
      "role": "roles/viewer",
      "members": ["user:sean@example.com"]
    }
  ]
}

For a description of IAM and its features, see the [IAM developer's guide](https://cloud.google.com/iam).

func (*Policy) MarshalJSON 

func (s *Policy) MarshalJSON() ([]byte, error)

type Position 

type Position struct {
	// Position: The 0-based offset from the start of the forward strand for
	// that reference.
	Position int64 `json:"position,omitempty,string"`

	// ReferenceName: The name of the reference in whatever reference set is
	// being used.
	ReferenceName string `json:"referenceName,omitempty"`

	// ReverseStrand: Whether this position is on the reverse strand, as
	// opposed to the forward
	// strand.
	ReverseStrand bool `json:"reverseStrand,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Position") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Position") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Position: An abstraction for referring to a genomic position, in relation to some already known reference. For now, represents a genomic position as a reference name, a base number on that reference (0-based), and a determination of forward or reverse strand.

func (*Position) MarshalJSON 

func (s *Position) MarshalJSON() ([]byte, error)

type Program 

type Program struct {
	// CommandLine: The command line used to run this program.
	CommandLine string `json:"commandLine,omitempty"`

	// Id: The user specified locally unique ID of the program. Used along
	// with
	// `prevProgramId` to define an ordering between programs.
	Id string `json:"id,omitempty"`

	// Name: The display name of the program. This is typically the
	// colloquial name of
	// the tool used, for example 'bwa' or 'picard'.
	Name string `json:"name,omitempty"`

	// PrevProgramId: The ID of the program run before this one.
	PrevProgramId string `json:"prevProgramId,omitempty"`

	// Version: The version of the program run.
	Version string `json:"version,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CommandLine") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CommandLine") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*Program) MarshalJSON 

func (s *Program) MarshalJSON() ([]byte, error)

type Range 

type Range struct {
	// End: The end position of the range on the reference, 0-based
	// exclusive.
	End int64 `json:"end,omitempty,string"`

	// ReferenceName: The reference sequence name, for example `chr1`,
	// `1`, or `chrX`.
	ReferenceName string `json:"referenceName,omitempty"`

	// Start: The start position of the range on the reference, 0-based
	// inclusive.
	Start int64 `json:"start,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "End") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "End") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Range: A 0-based half-open genomic coordinate range for search requests.

func (*Range) MarshalJSON 

func (s *Range) MarshalJSON() ([]byte, error)

type Read 

type Read struct {
	// AlignedQuality: The quality of the read sequence contained in this
	// alignment record
	// (equivalent to QUAL in SAM).
	// `alignedSequence` and `alignedQuality` may be shorter than the full
	// read
	// sequence and quality. This will occur if the alignment is part of
	// a
	// chimeric alignment, or if the read was trimmed. When this occurs, the
	// CIGAR
	// for this read will begin/end with a hard clip operator that will
	// indicate
	// the length of the excised sequence.
	AlignedQuality []int64 `json:"alignedQuality,omitempty"`

	// AlignedSequence: The bases of the read sequence contained in this
	// alignment record,
	// **without CIGAR operations applied** (equivalent to SEQ in
	// SAM).
	// `alignedSequence` and `alignedQuality` may be
	// shorter than the full read sequence and quality. This will occur if
	// the
	// alignment is part of a chimeric alignment, or if the read was
	// trimmed. When
	// this occurs, the CIGAR for this read will begin/end with a hard
	// clip
	// operator that will indicate the length of the excised sequence.
	AlignedSequence string `json:"alignedSequence,omitempty"`

	// Alignment: The linear alignment for this alignment record. This field
	// is null for
	// unmapped reads.
	Alignment *LinearAlignment `json:"alignment,omitempty"`

	// DuplicateFragment: The fragment is a PCR or optical duplicate (SAM
	// flag 0x400).
	DuplicateFragment bool `json:"duplicateFragment,omitempty"`

	// FailedVendorQualityChecks: Whether this read did not pass filters,
	// such as platform or vendor quality
	// controls (SAM flag 0x200).
	FailedVendorQualityChecks bool `json:"failedVendorQualityChecks,omitempty"`

	// FragmentLength: The observed length of the fragment, equivalent to
	// TLEN in SAM.
	FragmentLength int64 `json:"fragmentLength,omitempty"`

	// FragmentName: The fragment name. Equivalent to QNAME (query template
	// name) in SAM.
	FragmentName string `json:"fragmentName,omitempty"`

	// Id: The server-generated read ID, unique across all reads. This is
	// different
	// from the `fragmentName`.
	Id string `json:"id,omitempty"`

	// Info: A map of additional read alignment information. This must be of
	// the form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// NextMatePosition: The mapping of the primary alignment of
	// the
	// `(readNumber+1)%numberReads` read in the fragment. It replaces
	// mate position and mate strand in SAM.
	NextMatePosition *Position `json:"nextMatePosition,omitempty"`

	// NumberReads: The number of reads in the fragment (extension to SAM
	// flag 0x1).
	NumberReads int64 `json:"numberReads,omitempty"`

	// ProperPlacement: The orientation and the distance between reads from
	// the fragment are
	// consistent with the sequencing protocol (SAM flag 0x2).
	ProperPlacement bool `json:"properPlacement,omitempty"`

	// ReadGroupId: The ID of the read group this read belongs to. A read
	// belongs to exactly
	// one read group. This is a server-generated ID which is distinct from
	// SAM's
	// RG tag (for that value, see
	// ReadGroup.name).
	ReadGroupId string `json:"readGroupId,omitempty"`

	// ReadGroupSetId: The ID of the read group set this read belongs to. A
	// read belongs to
	// exactly one read group set.
	ReadGroupSetId string `json:"readGroupSetId,omitempty"`

	// ReadNumber: The read number in sequencing. 0-based and less than
	// numberReads. This
	// field replaces SAM flag 0x40 and 0x80.
	ReadNumber int64 `json:"readNumber,omitempty"`

	// SecondaryAlignment: Whether this alignment is secondary. Equivalent
	// to SAM flag 0x100.
	// A secondary alignment represents an alternative to the primary
	// alignment
	// for this read. Aligners may return secondary alignments if a read can
	// map
	// ambiguously to multiple coordinates in the genome. By convention,
	// each read
	// has one and only one alignment where both `secondaryAlignment`
	// and `supplementaryAlignment` are false.
	SecondaryAlignment bool `json:"secondaryAlignment,omitempty"`

	// SupplementaryAlignment: Whether this alignment is supplementary.
	// Equivalent to SAM flag 0x800.
	// Supplementary alignments are used in the representation of a
	// chimeric
	// alignment. In a chimeric alignment, a read is split into
	// multiple
	// linear alignments that map to different reference contigs. The
	// first
	// linear alignment in the read will be designated as the
	// representative
	// alignment; the remaining linear alignments will be designated
	// as
	// supplementary alignments. These alignments may have different
	// mapping
	// quality scores. In each linear alignment in a chimeric alignment, the
	// read
	// will be hard clipped. The `alignedSequence` and
	// `alignedQuality` fields in the alignment record will only
	// represent the bases for its respective linear alignment.
	SupplementaryAlignment bool `json:"supplementaryAlignment,omitempty"`

	// ForceSendFields is a list of field names (e.g. "AlignedQuality") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AlignedQuality") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

Read: A read alignment describes a linear alignment of a string of DNA to a reference sequence, in addition to metadata about the fragment (the molecule of DNA sequenced) and the read (the bases which were read by the sequencer). A read is equivalent to a line in a SAM file. A read belongs to exactly one read group and exactly one read group set.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

### Reverse-stranded reads

Mapped reads (reads having a non-null `alignment`) can be aligned to either the forward or the reverse strand of their associated reference. Strandedness of a mapped read is encoded by `alignment.position.reverseStrand`.

If we consider the reference to be a forward-stranded coordinate space of `[0, reference.length)` with `0` as the left-most position and `reference.length` as the right-most position, reads are always aligned left to right. That is, `alignment.position.position` always refers to the left-most reference coordinate and `alignment.cigar` describes the alignment of this read to the reference from left to right. All per-base fields such as `alignedSequence` and `alignedQuality` share this same left-to-right orientation; this is true of reads which are aligned to either strand. For reverse-stranded reads, this means that `alignedSequence` is the reverse complement of the bases that were originally reported by the sequencing machine.

### Generating a reference-aligned sequence string

When interacting with mapped reads, it's often useful to produce a string representing the local alignment of the read to reference. The following pseudocode demonstrates one way of doing this: 

out = ""
offset = 0
for c in read.alignment.cigar {
  switch c.operation {
  case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
    out += read.alignedSequence[offset:offset+c.operationLength]
    offset += c.operationLength
    break
  case "CLIP_SOFT", "INSERT":
    offset += c.operationLength
    break
  case "PAD":
    out += repeat("*", c.operationLength)
    break
  case "DELETE":
    out += repeat("-", c.operationLength)
    break
  case "SKIP":
    out += repeat(" ", c.operationLength)
    break
  case "CLIP_HARD":
    break
  }
}
return out

### Converting to SAM's CIGAR string

The following pseudocode generates a SAM CIGAR string from the `cigar` field. Note that this is a lossy conversion (`cigar.referenceSequence` is lost). 

cigarMap = {
  "ALIGNMENT_MATCH": "M",
  "INSERT": "I",
  "DELETE": "D",
  "SKIP": "N",
  "CLIP_SOFT": "S",
  "CLIP_HARD": "H",
  "PAD": "P",
  "SEQUENCE_MATCH": "=",
  "SEQUENCE_MISMATCH": "X",
}
cigarStr = ""
for c in read.alignment.cigar {
  cigarStr += c.operationLength + cigarMap[c.operation]
}
return cigarStr

func (*Read) MarshalJSON 

func (s *Read) MarshalJSON() ([]byte, error)

type ReadGroup 

type ReadGroup struct {
	// DatasetId: The dataset to which this read group belongs.
	DatasetId string `json:"datasetId,omitempty"`

	// Description: A free-form text description of this read group.
	Description string `json:"description,omitempty"`

	// Experiment: The experiment used to generate this read group.
	Experiment *Experiment `json:"experiment,omitempty"`

	// Id: The server-generated read group ID, unique for all read
	// groups.
	// Note: This is different than the @RG ID field in the SAM spec. For
	// that
	// value, see name.
	Id string `json:"id,omitempty"`

	// Info: A map of additional read group information. This must be of the
	// form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// Name: The read group name. This corresponds to the @RG ID field in
	// the SAM spec.
	Name string `json:"name,omitempty"`

	// PredictedInsertSize: The predicted insert size of this read group.
	// The insert size is the length
	// the sequenced DNA fragment from end-to-end, not including the
	// adapters.
	PredictedInsertSize int64 `json:"predictedInsertSize,omitempty"`

	// Programs: The programs used to generate this read group. Programs are
	// always
	// identical for all read groups within a read group set. For this
	// reason,
	// only the first read group in a returned set will have this
	// field
	// populated.
	Programs []*Program `json:"programs,omitempty"`

	// ReferenceSetId: The reference set the reads in this read group are
	// aligned to.
	ReferenceSetId string `json:"referenceSetId,omitempty"`

	// SampleId: A client-supplied sample identifier for the reads in this
	// read group.
	SampleId string `json:"sampleId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DatasetId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ReadGroup: A read group is all the data that's processed the same way by the sequencer.

func (*ReadGroup) MarshalJSON 

func (s *ReadGroup) MarshalJSON() ([]byte, error)

type ReadGroupSet 

type ReadGroupSet struct {
	// DatasetId: The dataset to which this read group set belongs.
	DatasetId string `json:"datasetId,omitempty"`

	// Filename: The filename of the original source file for this read
	// group set, if any.
	Filename string `json:"filename,omitempty"`

	// Id: The server-generated read group set ID, unique for all read group
	// sets.
	Id string `json:"id,omitempty"`

	// Info: A map of additional read group set information.
	Info map[string][]interface{} `json:"info,omitempty"`

	// Name: The read group set name. By default this will be initialized to
	// the sample
	// name of the sequenced data contained in this set.
	Name string `json:"name,omitempty"`

	// ReadGroups: The read groups in this set. There are typically 1-10
	// read groups in a read
	// group set.
	ReadGroups []*ReadGroup `json:"readGroups,omitempty"`

	// ReferenceSetId: The reference set to which the reads in this read
	// group set are aligned.
	ReferenceSetId string `json:"referenceSetId,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "DatasetId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ReadGroupSet: A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way.

* A read group set belongs to one dataset. * A read group belongs to one read group set. * A read belongs to one read group.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*ReadGroupSet) MarshalJSON 

func (s *ReadGroupSet) MarshalJSON() ([]byte, error)

type ReadgroupsetsCoveragebucketsListCall 

type ReadgroupsetsCoveragebucketsListCall struct {
	// contains filtered or unexported fields
}

func (*ReadgroupsetsCoveragebucketsListCall) Context 

func (c *ReadgroupsetsCoveragebucketsListCall) Context(ctx context.Context) *ReadgroupsetsCoveragebucketsListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadgroupsetsCoveragebucketsListCall) Do 

func (c *ReadgroupsetsCoveragebucketsListCall) Do(opts ...googleapi.CallOption) (*ListCoverageBucketsResponse, error)

Do executes the "genomics.readgroupsets.coveragebuckets.list" call. Exactly one of *ListCoverageBucketsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListCoverageBucketsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadgroupsetsCoveragebucketsListCall) End 

func (c *ReadgroupsetsCoveragebucketsListCall) End(end int64) *ReadgroupsetsCoveragebucketsListCall

End sets the optional parameter "end": The end position of the range on the reference, 0-based exclusive. If specified, `referenceName` must also be specified. If unset or 0, defaults to the length of the reference.

func (*ReadgroupsetsCoveragebucketsListCall) Fields 

func (c *ReadgroupsetsCoveragebucketsListCall) Fields(s ...googleapi.Field) *ReadgroupsetsCoveragebucketsListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadgroupsetsCoveragebucketsListCall) Header 

func (c *ReadgroupsetsCoveragebucketsListCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReadgroupsetsCoveragebucketsListCall) IfNoneMatch 

func (c *ReadgroupsetsCoveragebucketsListCall) IfNoneMatch(entityTag string) *ReadgroupsetsCoveragebucketsListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*ReadgroupsetsCoveragebucketsListCall) PageSize 

func (c *ReadgroupsetsCoveragebucketsListCall) PageSize(pageSize int64) *ReadgroupsetsCoveragebucketsListCall

PageSize sets the optional parameter "pageSize": The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 2048.

func (*ReadgroupsetsCoveragebucketsListCall) PageToken 

func (c *ReadgroupsetsCoveragebucketsListCall) PageToken(pageToken string) *ReadgroupsetsCoveragebucketsListCall

PageToken sets the optional parameter "pageToken": The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

func (*ReadgroupsetsCoveragebucketsListCall) Pages 

func (c *ReadgroupsetsCoveragebucketsListCall) Pages(ctx context.Context, f func(*ListCoverageBucketsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

func (*ReadgroupsetsCoveragebucketsListCall) ReferenceName 

func (c *ReadgroupsetsCoveragebucketsListCall) ReferenceName(referenceName string) *ReadgroupsetsCoveragebucketsListCall

ReferenceName sets the optional parameter "referenceName": The name of the reference to query, within the reference set associated with this query.

func (*ReadgroupsetsCoveragebucketsListCall) Start 

func (c *ReadgroupsetsCoveragebucketsListCall) Start(start int64) *ReadgroupsetsCoveragebucketsListCall

Start sets the optional parameter "start": The start position of the range on the reference, 0-based inclusive. If specified, `referenceName` must also be specified. Defaults to 0.

func (*ReadgroupsetsCoveragebucketsListCall) TargetBucketWidth 

func (c *ReadgroupsetsCoveragebucketsListCall) TargetBucketWidth(targetBucketWidth int64) *ReadgroupsetsCoveragebucketsListCall

TargetBucketWidth sets the optional parameter "targetBucketWidth": The desired width of each reported coverage bucket in base pairs. This will be rounded down to the nearest precomputed bucket width; the value of which is returned as `bucketWidth` in the response. Defaults to infinity (each bucket spans an entire reference sequence) or the length of the target range, if specified. The smallest precomputed `bucketWidth` is currently 2048 base pairs; this is subject to change.

type ReadgroupsetsCoveragebucketsService 

type ReadgroupsetsCoveragebucketsService struct {
	// contains filtered or unexported fields
}

func NewReadgroupsetsCoveragebucketsService 

func NewReadgroupsetsCoveragebucketsService(s *Service) *ReadgroupsetsCoveragebucketsService

func (*ReadgroupsetsCoveragebucketsService) List 

func (r *ReadgroupsetsCoveragebucketsService) List(readGroupSetId string) *ReadgroupsetsCoveragebucketsListCall

List: Lists fixed width coverage buckets for a read group set, each of which correspond to a range of a reference sequence. Each bucket summarizes coverage information across its corresponding genomic range.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Coverage is defined as the number of reads which are aligned to a given base in the reference sequence. Coverage buckets are available at several precomputed bucket widths, enabling retrieval of various coverage 'zoom levels'. The caller must have READ permissions for the target read group set.

type ReadgroupsetsDeleteCall 

type ReadgroupsetsDeleteCall struct {
	// contains filtered or unexported fields
}

func (*ReadgroupsetsDeleteCall) Context 

func (c *ReadgroupsetsDeleteCall) Context(ctx context.Context) *ReadgroupsetsDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadgroupsetsDeleteCall) Do 

func (c *ReadgroupsetsDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.readgroupsets.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadgroupsetsDeleteCall) Fields 

func (c *ReadgroupsetsDeleteCall) Fields(s ...googleapi.Field) *ReadgroupsetsDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadgroupsetsDeleteCall) Header 

func (c *ReadgroupsetsDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type ReadgroupsetsExportCall 

type ReadgroupsetsExportCall struct {
	// contains filtered or unexported fields
}

func (*ReadgroupsetsExportCall) Context 

func (c *ReadgroupsetsExportCall) Context(ctx context.Context) *ReadgroupsetsExportCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadgroupsetsExportCall) Do 

func (c *ReadgroupsetsExportCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.readgroupsets.export" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadgroupsetsExportCall) Fields 

func (c *ReadgroupsetsExportCall) Fields(s ...googleapi.Field) *ReadgroupsetsExportCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadgroupsetsExportCall) Header 

func (c *ReadgroupsetsExportCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type ReadgroupsetsGetCall 

type ReadgroupsetsGetCall struct {
	// contains filtered or unexported fields
}

func (*ReadgroupsetsGetCall) Context 

func (c *ReadgroupsetsGetCall) Context(ctx context.Context) *ReadgroupsetsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadgroupsetsGetCall) Do 

func (c *ReadgroupsetsGetCall) Do(opts ...googleapi.CallOption) (*ReadGroupSet, error)

Do executes the "genomics.readgroupsets.get" call. Exactly one of *ReadGroupSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ReadGroupSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadgroupsetsGetCall) Fields 

func (c *ReadgroupsetsGetCall) Fields(s ...googleapi.Field) *ReadgroupsetsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadgroupsetsGetCall) Header 

func (c *ReadgroupsetsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReadgroupsetsGetCall) IfNoneMatch 

func (c *ReadgroupsetsGetCall) IfNoneMatch(entityTag string) *ReadgroupsetsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type ReadgroupsetsImportCall 

type ReadgroupsetsImportCall struct {
	// contains filtered or unexported fields
}

func (*ReadgroupsetsImportCall) Context 

func (c *ReadgroupsetsImportCall) Context(ctx context.Context) *ReadgroupsetsImportCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadgroupsetsImportCall) Do 

func (c *ReadgroupsetsImportCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.readgroupsets.import" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadgroupsetsImportCall) Fields 

func (c *ReadgroupsetsImportCall) Fields(s ...googleapi.Field) *ReadgroupsetsImportCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadgroupsetsImportCall) Header 

func (c *ReadgroupsetsImportCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type ReadgroupsetsPatchCall 

type ReadgroupsetsPatchCall struct {
	// contains filtered or unexported fields
}

func (*ReadgroupsetsPatchCall) Context 

func (c *ReadgroupsetsPatchCall) Context(ctx context.Context) *ReadgroupsetsPatchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadgroupsetsPatchCall) Do 

func (c *ReadgroupsetsPatchCall) Do(opts ...googleapi.CallOption) (*ReadGroupSet, error)

Do executes the "genomics.readgroupsets.patch" call. Exactly one of *ReadGroupSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ReadGroupSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadgroupsetsPatchCall) Fields 

func (c *ReadgroupsetsPatchCall) Fields(s ...googleapi.Field) *ReadgroupsetsPatchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadgroupsetsPatchCall) Header 

func (c *ReadgroupsetsPatchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReadgroupsetsPatchCall) UpdateMask 

func (c *ReadgroupsetsPatchCall) UpdateMask(updateMask string) *ReadgroupsetsPatchCall

UpdateMask sets the optional parameter "updateMask": An optional mask specifying which fields to update. Supported fields:

* name. * referenceSetId.

Leaving `updateMask` unset is equivalent to specifying all mutable fields.

type ReadgroupsetsSearchCall 

type ReadgroupsetsSearchCall struct {
	// contains filtered or unexported fields
}

func (*ReadgroupsetsSearchCall) Context 

func (c *ReadgroupsetsSearchCall) Context(ctx context.Context) *ReadgroupsetsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadgroupsetsSearchCall) Do 

func (c *ReadgroupsetsSearchCall) Do(opts ...googleapi.CallOption) (*SearchReadGroupSetsResponse, error)

Do executes the "genomics.readgroupsets.search" call. Exactly one of *SearchReadGroupSetsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchReadGroupSetsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadgroupsetsSearchCall) Fields 

func (c *ReadgroupsetsSearchCall) Fields(s ...googleapi.Field) *ReadgroupsetsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadgroupsetsSearchCall) Header 

func (c *ReadgroupsetsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReadgroupsetsSearchCall) Pages 

func (c *ReadgroupsetsSearchCall) Pages(ctx context.Context, f func(*SearchReadGroupSetsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type ReadgroupsetsService 

type ReadgroupsetsService struct {
	Coveragebuckets *ReadgroupsetsCoveragebucketsService
	// contains filtered or unexported fields
}

func NewReadgroupsetsService 

func NewReadgroupsetsService(s *Service) *ReadgroupsetsService

func (*ReadgroupsetsService) Delete 

func (r *ReadgroupsetsService) Delete(readGroupSetId string) *ReadgroupsetsDeleteCall

Delete: Deletes a read group set.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*ReadgroupsetsService) Export 

func (r *ReadgroupsetsService) Export(readGroupSetId string, exportreadgroupsetrequest *ExportReadGroupSetRequest) *ReadgroupsetsExportCall

Export: Exports a read group set to a BAM file in Google Cloud Storage.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Note that currently there may be some differences between exported BAM files and the original BAM file at the time of import. See ImportReadGroupSets for caveats.

func (*ReadgroupsetsService) Get 

func (r *ReadgroupsetsService) Get(readGroupSetId string) *ReadgroupsetsGetCall

Get: Gets a read group set by ID.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*ReadgroupsetsService) Import 

func (r *ReadgroupsetsService) Import(importreadgroupsetsrequest *ImportReadGroupSetsRequest) *ReadgroupsetsImportCall

Import: Creates read group sets by asynchronously importing the provided information.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

The caller must have WRITE permissions to the dataset.

## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import

- Tags will be converted to strings - tag types are not preserved - Comments (`@CO`) in the input file header will not be preserved - Original header order of references (`@SQ`) will not be preserved - Any reverse stranded unmapped reads will be reverse complemented, and their qualities (also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped reads will be stripped of positional information (reference name and position)

func (*ReadgroupsetsService) Patch 

func (r *ReadgroupsetsService) Patch(readGroupSetId string, readgroupset *ReadGroupSet) *ReadgroupsetsPatchCall

Patch: Updates a read group set.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

This method supports patch semantics.

func (*ReadgroupsetsService) Search 

func (r *ReadgroupsetsService) Search(searchreadgroupsetsrequest *SearchReadGroupSetsRequest) *ReadgroupsetsSearchCall

Search: Searches for read group sets matching the criteria.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.searchReadGroupSets](http s://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readm ethods.avdl#L135).

type ReadsSearchCall 

type ReadsSearchCall struct {
	// contains filtered or unexported fields
}

func (*ReadsSearchCall) Context 

func (c *ReadsSearchCall) Context(ctx context.Context) *ReadsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReadsSearchCall) Do 

func (c *ReadsSearchCall) Do(opts ...googleapi.CallOption) (*SearchReadsResponse, error)

Do executes the "genomics.reads.search" call. Exactly one of *SearchReadsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchReadsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReadsSearchCall) Fields 

func (c *ReadsSearchCall) Fields(s ...googleapi.Field) *ReadsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReadsSearchCall) Header 

func (c *ReadsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReadsSearchCall) Pages 

func (c *ReadsSearchCall) Pages(ctx context.Context, f func(*SearchReadsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type ReadsService 

type ReadsService struct {
	// contains filtered or unexported fields
}

func NewReadsService 

func NewReadsService(s *Service) *ReadsService

func (*ReadsService) Search 

func (r *ReadsService) Search(searchreadsrequest *SearchReadsRequest) *ReadsSearchCall

Search: Gets a list of reads for one or more read group sets.

For the definitions of read group sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Reads search operates over a genomic coordinate space of reference sequence & position defined over the reference sequences to which the requested read group sets are aligned.

If a target positional range is specified, search returns all reads whose alignment to the reference genome overlap the range. A query which specifies only read group set IDs yields all reads in those read group sets, including unmapped reads.

All reads returned (including reads on subsequent pages) are ordered by genomic coordinate (by reference sequence, then position). Reads with equivalent genomic coordinates are returned in an unspecified order. This order is consistent, such that two queries for the same content (regardless of page size) yield reads in the same order across their respective streams of paginated responses.

Implements [GlobalAllianceApi.searchReads](https://github. com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl #L85).

type Reference 

type Reference struct {
	// Id: The server-generated reference ID, unique across all references.
	Id string `json:"id,omitempty"`

	// Length: The length of this reference's sequence.
	Length int64 `json:"length,omitempty,string"`

	// Md5checksum: MD5 of the upper-case sequence excluding all whitespace
	// characters (this
	// is equivalent to SQ:M5 in SAM). This value is represented in lower
	// case
	// hexadecimal format.
	Md5checksum string `json:"md5checksum,omitempty"`

	// Name: The name of this reference, for example `22`.
	Name string `json:"name,omitempty"`

	// NcbiTaxonId: ID from http://www.ncbi.nlm.nih.gov/taxonomy. For
	// example, 9606 for human.
	NcbiTaxonId int64 `json:"ncbiTaxonId,omitempty"`

	// SourceAccessions: All known corresponding accession IDs in INSDC
	// (GenBank/ENA/DDBJ) ideally
	// with a version number, for example `GCF_000001405.26`.
	SourceAccessions []string `json:"sourceAccessions,omitempty"`

	// SourceUri: The URI from which the sequence was obtained. Typically
	// specifies a FASTA
	// format file.
	SourceUri string `json:"sourceUri,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Id") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Id") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Reference: A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*Reference) MarshalJSON 

func (s *Reference) MarshalJSON() ([]byte, error)

type ReferenceBound 

type ReferenceBound struct {
	// ReferenceName: The name of the reference associated with this
	// reference bound.
	ReferenceName string `json:"referenceName,omitempty"`

	// UpperBound: An upper bound (inclusive) on the starting coordinate of
	// any
	// variant in the reference sequence.
	UpperBound int64 `json:"upperBound,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "ReferenceName") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ReferenceName") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ReferenceBound: ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.

func (*ReferenceBound) MarshalJSON 

func (s *ReferenceBound) MarshalJSON() ([]byte, error)

type ReferenceSet 

type ReferenceSet struct {
	// AssemblyId: Public id of this reference set, such as `GRCh37`.
	AssemblyId string `json:"assemblyId,omitempty"`

	// Description: Free text description of this reference set.
	Description string `json:"description,omitempty"`

	// Id: The server-generated reference set ID, unique across all
	// reference sets.
	Id string `json:"id,omitempty"`

	// Md5checksum: Order-independent MD5 checksum which identifies this
	// reference set. The
	// checksum is computed by sorting all lower case hexidecimal
	// string
	// `reference.md5checksum` (for all reference in this set) in
	// ascending lexicographic order, concatenating, and taking the MD5 of
	// that
	// value. The resulting value is represented in lower case hexadecimal
	// format.
	Md5checksum string `json:"md5checksum,omitempty"`

	// NcbiTaxonId: ID from http://www.ncbi.nlm.nih.gov/taxonomy (for
	// example, 9606 for human)
	// indicating the species which this reference set is intended to model.
	// Note
	// that contained references may specify a different `ncbiTaxonId`,
	// as
	// assemblies may contain reference sequences which do not belong to
	// the
	// modeled species, for example EBV in a human reference genome.
	NcbiTaxonId int64 `json:"ncbiTaxonId,omitempty"`

	// ReferenceIds: The IDs of the reference objects that are part of this
	// set.
	// `Reference.md5checksum` must be unique within this set.
	ReferenceIds []string `json:"referenceIds,omitempty"`

	// SourceAccessions: All known corresponding accession IDs in INSDC
	// (GenBank/ENA/DDBJ) ideally
	// with a version number, for example `NC_000001.11`.
	SourceAccessions []string `json:"sourceAccessions,omitempty"`

	// SourceUri: The URI from which the references were obtained.
	SourceUri string `json:"sourceUri,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "AssemblyId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AssemblyId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ReferenceSet: A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*ReferenceSet) MarshalJSON 

func (s *ReferenceSet) MarshalJSON() ([]byte, error)

type ReferencesBasesListCall 

type ReferencesBasesListCall struct {
	// contains filtered or unexported fields
}

func (*ReferencesBasesListCall) Context 

func (c *ReferencesBasesListCall) Context(ctx context.Context) *ReferencesBasesListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReferencesBasesListCall) Do 

func (c *ReferencesBasesListCall) Do(opts ...googleapi.CallOption) (*ListBasesResponse, error)

Do executes the "genomics.references.bases.list" call. Exactly one of *ListBasesResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListBasesResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReferencesBasesListCall) End 

func (c *ReferencesBasesListCall) End(end int64) *ReferencesBasesListCall

End sets the optional parameter "end": The end position (0-based, exclusive) of this query. Defaults to the length of this reference.

func (*ReferencesBasesListCall) Fields 

func (c *ReferencesBasesListCall) Fields(s ...googleapi.Field) *ReferencesBasesListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReferencesBasesListCall) Header 

func (c *ReferencesBasesListCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReferencesBasesListCall) IfNoneMatch 

func (c *ReferencesBasesListCall) IfNoneMatch(entityTag string) *ReferencesBasesListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*ReferencesBasesListCall) PageSize 

func (c *ReferencesBasesListCall) PageSize(pageSize int64) *ReferencesBasesListCall

PageSize sets the optional parameter "pageSize": The maximum number of bases to return in a single page. If unspecified, defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base pairs).

func (*ReferencesBasesListCall) PageToken 

func (c *ReferencesBasesListCall) PageToken(pageToken string) *ReferencesBasesListCall

PageToken sets the optional parameter "pageToken": The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

func (*ReferencesBasesListCall) Pages 

func (c *ReferencesBasesListCall) Pages(ctx context.Context, f func(*ListBasesResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

func (*ReferencesBasesListCall) Start 

func (c *ReferencesBasesListCall) Start(start int64) *ReferencesBasesListCall

Start sets the optional parameter "start": The start position (0-based) of this query. Defaults to 0.

type ReferencesBasesService 

type ReferencesBasesService struct {
	// contains filtered or unexported fields
}

func NewReferencesBasesService 

func NewReferencesBasesService(s *Service) *ReferencesBasesService

func (*ReferencesBasesService) List 

func (r *ReferencesBasesService) List(referenceId string) *ReferencesBasesListCall

List: Lists the bases in a reference, optionally restricted to a range.

For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.getReferenceBases](https: //github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referen cemethods.avdl#L221).

type ReferencesGetCall 

type ReferencesGetCall struct {
	// contains filtered or unexported fields
}

func (*ReferencesGetCall) Context 

func (c *ReferencesGetCall) Context(ctx context.Context) *ReferencesGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReferencesGetCall) Do 

func (c *ReferencesGetCall) Do(opts ...googleapi.CallOption) (*Reference, error)

Do executes the "genomics.references.get" call. Exactly one of *Reference or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Reference.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReferencesGetCall) Fields 

func (c *ReferencesGetCall) Fields(s ...googleapi.Field) *ReferencesGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReferencesGetCall) Header 

func (c *ReferencesGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReferencesGetCall) IfNoneMatch 

func (c *ReferencesGetCall) IfNoneMatch(entityTag string) *ReferencesGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type ReferencesSearchCall 

type ReferencesSearchCall struct {
	// contains filtered or unexported fields
}

func (*ReferencesSearchCall) Context 

func (c *ReferencesSearchCall) Context(ctx context.Context) *ReferencesSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReferencesSearchCall) Do 

func (c *ReferencesSearchCall) Do(opts ...googleapi.CallOption) (*SearchReferencesResponse, error)

Do executes the "genomics.references.search" call. Exactly one of *SearchReferencesResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchReferencesResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReferencesSearchCall) Fields 

func (c *ReferencesSearchCall) Fields(s ...googleapi.Field) *ReferencesSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReferencesSearchCall) Header 

func (c *ReferencesSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReferencesSearchCall) Pages 

func (c *ReferencesSearchCall) Pages(ctx context.Context, f func(*SearchReferencesResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type ReferencesService 

type ReferencesService struct {
	Bases *ReferencesBasesService
	// contains filtered or unexported fields
}

func NewReferencesService 

func NewReferencesService(s *Service) *ReferencesService

func (*ReferencesService) Get 

func (r *ReferencesService) Get(referenceId string) *ReferencesGetCall

Get: Gets a reference.

For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.getReference](https://git hub.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemet hods.avdl#L158).

func (*ReferencesService) Search 

func (r *ReferencesService) Search(searchreferencesrequest *SearchReferencesRequest) *ReferencesSearchCall

Search: Searches for references which match the given criteria.

For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.searchReferences](https:/ /github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referenc emethods.avdl#L146).

type ReferencesetsGetCall 

type ReferencesetsGetCall struct {
	// contains filtered or unexported fields
}

func (*ReferencesetsGetCall) Context 

func (c *ReferencesetsGetCall) Context(ctx context.Context) *ReferencesetsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReferencesetsGetCall) Do 

func (c *ReferencesetsGetCall) Do(opts ...googleapi.CallOption) (*ReferenceSet, error)

Do executes the "genomics.referencesets.get" call. Exactly one of *ReferenceSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ReferenceSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReferencesetsGetCall) Fields 

func (c *ReferencesetsGetCall) Fields(s ...googleapi.Field) *ReferencesetsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReferencesetsGetCall) Header 

func (c *ReferencesetsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReferencesetsGetCall) IfNoneMatch 

func (c *ReferencesetsGetCall) IfNoneMatch(entityTag string) *ReferencesetsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type ReferencesetsSearchCall 

type ReferencesetsSearchCall struct {
	// contains filtered or unexported fields
}

func (*ReferencesetsSearchCall) Context 

func (c *ReferencesetsSearchCall) Context(ctx context.Context) *ReferencesetsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*ReferencesetsSearchCall) Do 

func (c *ReferencesetsSearchCall) Do(opts ...googleapi.CallOption) (*SearchReferenceSetsResponse, error)

Do executes the "genomics.referencesets.search" call. Exactly one of *SearchReferenceSetsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchReferenceSetsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*ReferencesetsSearchCall) Fields 

func (c *ReferencesetsSearchCall) Fields(s ...googleapi.Field) *ReferencesetsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*ReferencesetsSearchCall) Header 

func (c *ReferencesetsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*ReferencesetsSearchCall) Pages 

func (c *ReferencesetsSearchCall) Pages(ctx context.Context, f func(*SearchReferenceSetsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type ReferencesetsService 

type ReferencesetsService struct {
	// contains filtered or unexported fields
}

func NewReferencesetsService 

func NewReferencesetsService(s *Service) *ReferencesetsService

func (*ReferencesetsService) Get 

func (r *ReferencesetsService) Get(referenceSetId string) *ReferencesetsGetCall

Get: Gets a reference set.

For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.getReferenceSet](https:// github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/reference methods.avdl#L83).

func (*ReferencesetsService) Search 

func (r *ReferencesetsService) Search(searchreferencesetsrequest *SearchReferenceSetsRequest) *ReferencesetsSearchCall

Search: Searches for reference sets which match the given criteria.

For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.searchReferenceSets](http s://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/refer encemethods.avdl#L71)

type RuntimeMetadata 

type RuntimeMetadata struct {
	// ComputeEngine: Execution information specific to Google Compute
	// Engine.
	ComputeEngine *ComputeEngine `json:"computeEngine,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ComputeEngine") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ComputeEngine") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

RuntimeMetadata: Runtime metadata that will be populated in the runtimeMetadata field of the Operation associated with a RunPipeline execution.

func (*RuntimeMetadata) MarshalJSON 

func (s *RuntimeMetadata) MarshalJSON() ([]byte, error)

type SearchAnnotationSetsRequest 

type SearchAnnotationSetsRequest struct {
	// DatasetIds: Required. The dataset IDs to search within. Caller must
	// have `READ` access
	// to these datasets.
	DatasetIds []string `json:"datasetIds,omitempty"`

	// Name: Only return annotations sets for which a substring of the name
	// matches this
	// string (case insensitive).
	Name string `json:"name,omitempty"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 128. The maximum value is 1024.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ReferenceSetId: If specified, only annotation sets associated with
	// the given reference set
	// are returned.
	ReferenceSetId string `json:"referenceSetId,omitempty"`

	// Types: If specified, only annotation sets that have any of these
	// types are
	// returned.
	//
	// Possible values:
	//   "ANNOTATION_TYPE_UNSPECIFIED"
	//   "GENERIC" - A `GENERIC` annotation type should be used when no
	// other annotation
	// type will suffice. This represents an untyped annotation of the
	// reference
	// genome.
	//   "VARIANT" - A `VARIANT` annotation type.
	//   "GENE" - A `GENE` annotation type represents the existence of a
	// gene at the
	// associated reference coordinates. The start coordinate is typically
	// the
	// gene's transcription start site and the end is typically the end of
	// the
	// gene's last exon.
	//   "TRANSCRIPT" - A `TRANSCRIPT` annotation type represents the
	// assertion that a
	// particular region of the reference genome may be transcribed as RNA.
	Types []string `json:"types,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DatasetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetIds") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*SearchAnnotationSetsRequest) MarshalJSON 

func (s *SearchAnnotationSetsRequest) MarshalJSON() ([]byte, error)

type SearchAnnotationSetsResponse 

type SearchAnnotationSetsResponse struct {
	// AnnotationSets: The matching annotation sets.
	AnnotationSets []*AnnotationSet `json:"annotationSets,omitempty"`

	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "AnnotationSets") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AnnotationSets") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

func (*SearchAnnotationSetsResponse) MarshalJSON 

func (s *SearchAnnotationSetsResponse) MarshalJSON() ([]byte, error)

type SearchAnnotationsRequest 

type SearchAnnotationsRequest struct {
	// AnnotationSetIds: Required. The annotation sets to search within. The
	// caller must have
	// `READ` access to these annotation sets.
	// All queried annotation sets must have the same type.
	AnnotationSetIds []string `json:"annotationSetIds,omitempty"`

	// End: The end position of the range on the reference, 0-based
	// exclusive. If
	// referenceId or
	// referenceName
	// must be specified, Defaults to the length of the reference.
	End int64 `json:"end,omitempty,string"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 256. The maximum value is 2048.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ReferenceId: The ID of the reference to query.
	ReferenceId string `json:"referenceId,omitempty"`

	// ReferenceName: The name of the reference to query, within the
	// reference set associated
	// with this query.
	ReferenceName string `json:"referenceName,omitempty"`

	// Start: The start position of the range on the reference, 0-based
	// inclusive. If
	// specified,
	// referenceId or
	// referenceName
	// must be specified. Defaults to 0.
	Start int64 `json:"start,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "AnnotationSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AnnotationSetIds") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

func (*SearchAnnotationsRequest) MarshalJSON 

func (s *SearchAnnotationsRequest) MarshalJSON() ([]byte, error)

type SearchAnnotationsResponse 

type SearchAnnotationsResponse struct {
	// Annotations: The matching annotations.
	Annotations []*Annotation `json:"annotations,omitempty"`

	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Annotations") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Annotations") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*SearchAnnotationsResponse) MarshalJSON 

func (s *SearchAnnotationsResponse) MarshalJSON() ([]byte, error)

type SearchCallSetsRequest 

type SearchCallSetsRequest struct {
	// Name: Only return call sets for which a substring of the name matches
	// this
	// string.
	Name string `json:"name,omitempty"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 1024.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// VariantSetIds: Restrict the query to call sets within the given
	// variant sets. At least one
	// ID must be provided.
	VariantSetIds []string `json:"variantSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Name") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Name") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchCallSetsRequest: The call set search request.

func (*SearchCallSetsRequest) MarshalJSON 

func (s *SearchCallSetsRequest) MarshalJSON() ([]byte, error)

type SearchCallSetsResponse 

type SearchCallSetsResponse struct {
	// CallSets: The list of matching call sets.
	CallSets []*CallSet `json:"callSets,omitempty"`

	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "CallSets") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CallSets") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchCallSetsResponse: The call set search response.

func (*SearchCallSetsResponse) MarshalJSON 

func (s *SearchCallSetsResponse) MarshalJSON() ([]byte, error)

type SearchReadGroupSetsRequest 

type SearchReadGroupSetsRequest struct {
	// DatasetIds: Restricts this query to read group sets within the given
	// datasets. At least
	// one ID must be provided.
	DatasetIds []string `json:"datasetIds,omitempty"`

	// Name: Only return read group sets for which a substring of the name
	// matches this
	// string.
	Name string `json:"name,omitempty"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 256. The maximum value is 1024.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DatasetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetIds") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchReadGroupSetsRequest: The read group set search request.

func (*SearchReadGroupSetsRequest) MarshalJSON 

func (s *SearchReadGroupSetsRequest) MarshalJSON() ([]byte, error)

type SearchReadGroupSetsResponse 

type SearchReadGroupSetsResponse struct {
	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ReadGroupSets: The list of matching read group sets.
	ReadGroupSets []*ReadGroupSet `json:"readGroupSets,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchReadGroupSetsResponse: The read group set search response.

func (*SearchReadGroupSetsResponse) MarshalJSON 

func (s *SearchReadGroupSetsResponse) MarshalJSON() ([]byte, error)

type SearchReadsRequest 

type SearchReadsRequest struct {
	// End: The end position of the range on the reference, 0-based
	// exclusive. If
	// specified, `referenceName` must also be specified.
	End int64 `json:"end,omitempty,string"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 256. The maximum value is 2048.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ReadGroupIds: The IDs of the read groups within which to search for
	// reads. All specified
	// read groups must belong to the same read group sets. Must specify one
	// of
	// `readGroupSetIds` or `readGroupIds`.
	ReadGroupIds []string `json:"readGroupIds,omitempty"`

	// ReadGroupSetIds: The IDs of the read groups sets within which to
	// search for reads. All
	// specified read group sets must be aligned against a common set of
	// reference
	// sequences; this defines the genomic coordinates for the query. Must
	// specify
	// one of `readGroupSetIds` or `readGroupIds`.
	ReadGroupSetIds []string `json:"readGroupSetIds,omitempty"`

	// ReferenceName: The reference sequence name, for example `chr1`, `1`,
	// or `chrX`. If set to
	// `*`, only unmapped reads are returned. If unspecified, all reads
	// (mapped
	// and unmapped) are returned.
	ReferenceName string `json:"referenceName,omitempty"`

	// Start: The start position of the range on the reference, 0-based
	// inclusive. If
	// specified, `referenceName` must also be specified.
	Start int64 `json:"start,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "End") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "End") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchReadsRequest: The read search request.

func (*SearchReadsRequest) MarshalJSON 

func (s *SearchReadsRequest) MarshalJSON() ([]byte, error)

type SearchReadsResponse 

type SearchReadsResponse struct {
	// Alignments: The list of matching alignments sorted by mapped genomic
	// coordinate,
	// if any, ascending in position within the same reference. Unmapped
	// reads,
	// which have no position, are returned contiguously and are sorted
	// in
	// ascending lexicographic order by fragment name.
	Alignments []*Read `json:"alignments,omitempty"`

	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Alignments") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Alignments") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchReadsResponse: The read search response.

func (*SearchReadsResponse) MarshalJSON 

func (s *SearchReadsResponse) MarshalJSON() ([]byte, error)

type SearchReferenceSetsRequest 

type SearchReferenceSetsRequest struct {
	// Accessions: If present, return reference sets for which a prefix of
	// any of
	// sourceAccessions
	// match any of these strings. Accession numbers typically have a main
	// number
	// and a version, for example `NC_000001.11`.
	Accessions []string `json:"accessions,omitempty"`

	// AssemblyId: If present, return reference sets for which a substring
	// of their
	// `assemblyId` matches this string (case insensitive).
	AssemblyId string `json:"assemblyId,omitempty"`

	// Md5checksums: If present, return reference sets for which
	// the
	// md5checksum matches exactly.
	Md5checksums []string `json:"md5checksums,omitempty"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 1024. The maximum value is 4096.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Accessions") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Accessions") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*SearchReferenceSetsRequest) MarshalJSON 

func (s *SearchReferenceSetsRequest) MarshalJSON() ([]byte, error)

type SearchReferenceSetsResponse 

type SearchReferenceSetsResponse struct {
	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// ReferenceSets: The matching references sets.
	ReferenceSets []*ReferenceSet `json:"referenceSets,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*SearchReferenceSetsResponse) MarshalJSON 

func (s *SearchReferenceSetsResponse) MarshalJSON() ([]byte, error)

type SearchReferencesRequest 

type SearchReferencesRequest struct {
	// Accessions: If present, return references for which a prefix of any
	// of
	// sourceAccessions match
	// any of these strings. Accession numbers typically have a main number
	// and a
	// version, for example `GCF_000001405.26`.
	Accessions []string `json:"accessions,omitempty"`

	// Md5checksums: If present, return references for which the
	// md5checksum matches exactly.
	Md5checksums []string `json:"md5checksums,omitempty"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 1024. The maximum value is 4096.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ReferenceSetId: If present, return only references which belong to
	// this reference set.
	ReferenceSetId string `json:"referenceSetId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Accessions") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Accessions") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*SearchReferencesRequest) MarshalJSON 

func (s *SearchReferencesRequest) MarshalJSON() ([]byte, error)

type SearchReferencesResponse 

type SearchReferencesResponse struct {
	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// References: The matching references.
	References []*Reference `json:"references,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*SearchReferencesResponse) MarshalJSON 

func (s *SearchReferencesResponse) MarshalJSON() ([]byte, error)

type SearchVariantSetsRequest 

type SearchVariantSetsRequest struct {
	// DatasetIds: Exactly one dataset ID must be provided here. Only
	// variant sets which
	// belong to this dataset will be returned.
	DatasetIds []string `json:"datasetIds,omitempty"`

	// PageSize: The maximum number of results to return in a single page.
	// If unspecified,
	// defaults to 1024.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DatasetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetIds") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchVariantSetsRequest: The search variant sets request.

func (*SearchVariantSetsRequest) MarshalJSON 

func (s *SearchVariantSetsRequest) MarshalJSON() ([]byte, error)

type SearchVariantSetsResponse 

type SearchVariantSetsResponse struct {
	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// VariantSets: The variant sets belonging to the requested dataset.
	VariantSets []*VariantSet `json:"variantSets,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchVariantSetsResponse: The search variant sets response.

func (*SearchVariantSetsResponse) MarshalJSON 

func (s *SearchVariantSetsResponse) MarshalJSON() ([]byte, error)

type SearchVariantsRequest 

type SearchVariantsRequest struct {
	// CallSetIds: Only return variant calls which belong to call sets with
	// these ids.
	// Leaving this blank returns all variant calls. If a variant has
	// no
	// calls belonging to any of these call sets, it won't be returned at
	// all.
	CallSetIds []string `json:"callSetIds,omitempty"`

	// End: The end of the window, 0-based exclusive. If unspecified or 0,
	// defaults to
	// the length of the reference.
	End int64 `json:"end,omitempty,string"`

	// MaxCalls: The maximum number of calls to return in a single page.
	// Note that this
	// limit may be exceeded in the event that a matching variant contains
	// more
	// calls than the requested maximum. If unspecified, defaults to 5000.
	// The
	// maximum value is 10000.
	MaxCalls int64 `json:"maxCalls,omitempty"`

	// PageSize: The maximum number of variants to return in a single page.
	// If unspecified,
	// defaults to 5000. The maximum value is 10000.
	PageSize int64 `json:"pageSize,omitempty"`

	// PageToken: The continuation token, which is used to page through
	// large result sets.
	// To get the next page of results, set this parameter to the value
	// of
	// `nextPageToken` from the previous response.
	PageToken string `json:"pageToken,omitempty"`

	// ReferenceName: Required. Only return variants in this reference
	// sequence.
	ReferenceName string `json:"referenceName,omitempty"`

	// Start: The beginning of the window (0-based, inclusive) for
	// which
	// overlapping variants should be returned. If unspecified, defaults to
	// 0.
	Start int64 `json:"start,omitempty,string"`

	// VariantName: Only return variants which have exactly this name.
	VariantName string `json:"variantName,omitempty"`

	// VariantSetIds: At most one variant set ID must be provided. Only
	// variants from this
	// variant set will be returned. If omitted, a call set id must be
	// included in
	// the request.
	VariantSetIds []string `json:"variantSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CallSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CallSetIds") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchVariantsRequest: The variant search request.

func (*SearchVariantsRequest) MarshalJSON 

func (s *SearchVariantsRequest) MarshalJSON() ([]byte, error)

type SearchVariantsResponse 

type SearchVariantsResponse struct {
	// NextPageToken: The continuation token, which is used to page through
	// large result sets.
	// Provide this value in a subsequent request to return the next page
	// of
	// results. This field will be empty if there aren't any additional
	// results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// Variants: The list of matching Variants.
	Variants []*Variant `json:"variants,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SearchVariantsResponse: The variant search response.

func (*SearchVariantsResponse) MarshalJSON 

func (s *SearchVariantsResponse) MarshalJSON() ([]byte, error)

type Service 

type Service struct {
	BasePath                  string // API endpoint base URL
	UserAgent                 string // optional additional User-Agent fragment
	GoogleClientHeaderElement string // client header fragment, for Google use only

	Annotations *AnnotationsService

	Annotationsets *AnnotationsetsService

	Callsets *CallsetsService

	Datasets *DatasetsService

	Operations *OperationsService

	Readgroupsets *ReadgroupsetsService

	Reads *ReadsService

	References *ReferencesService

	Referencesets *ReferencesetsService

	Variants *VariantsService

	Variantsets *VariantsetsService
	// contains filtered or unexported fields
}

func New 

func New(client *http.Client) (*Service, error)

type SetIamPolicyRequest 

type SetIamPolicyRequest struct {
	// Policy: REQUIRED: The complete policy to be applied to the
	// `resource`. The size of
	// the policy is limited to a few 10s of KB. An empty policy is a
	// valid policy but certain Cloud Platform services (such as
	// Projects)
	// might reject them.
	Policy *Policy `json:"policy,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Policy") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Policy") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SetIamPolicyRequest: Request message for `SetIamPolicy` method.

func (*SetIamPolicyRequest) MarshalJSON 

func (s *SetIamPolicyRequest) MarshalJSON() ([]byte, error)

type Status 

type Status struct {
	// Code: The status code, which should be an enum value of
	// google.rpc.Code.
	Code int64 `json:"code,omitempty"`

	// Details: A list of messages that carry the error details.  There will
	// be a
	// common set of message types for APIs to use.
	Details []googleapi.RawMessage `json:"details,omitempty"`

	// Message: A developer-facing error message, which should be in
	// English. Any
	// user-facing error message should be localized and sent in
	// the
	// google.rpc.Status.details field, or localized by the client.
	Message string `json:"message,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Code") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Code") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Status: The `Status` type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by [gRPC](https://github.com/grpc). The error model is designed to be:

- Simple to use and understand for most users - Flexible enough to meet unexpected needs

Overview

The `Status` message contains three pieces of data: error code, error message, and error details. The error code should be an enum value of google.rpc.Code, but it may accept additional error codes if needed. The error message should be a developer-facing English message that helps developers *understand* and *resolve* the error. If a localized user-facing error message is needed, put the localized message in the error details or localize it in the client. The optional error details may contain arbitrary information about the error. There is a predefined set of error detail types in the package `google.rpc` which can be used for common error conditions.

Language mapping

The `Status` message is the logical representation of the error model, but it is not necessarily the actual wire format. When the `Status` message is exposed in different client libraries and different wire protocols, it can be mapped differently. For example, it will likely be mapped to some exceptions in Java, but more likely mapped to some error codes in C.

Other uses

The error model and the `Status` message can be used in a variety of environments, either with or without APIs, to provide a consistent developer experience across different environments.

Example uses of this error model include:

- Partial errors. If a service needs to return partial errors to the client, 

it may embed the `Status` in the normal response to indicate the

partial 

errors.

- Workflow errors. A typical workflow has multiple steps. Each step may 

have a `Status` message for error reporting purpose.

- Batch operations. If a client uses batch request and batch response, the 

`Status` message should be used directly inside batch response,

one for 

each error sub-response.

- Asynchronous operations. If an API call embeds asynchronous operation 

results in its response, the status of those operations should

be 

represented directly using the `Status` message.

- Logging. If some API errors are stored in logs, the message `Status` could 

be used directly after any stripping needed for security/privacy

reasons.

func (*Status) MarshalJSON 

func (s *Status) MarshalJSON() ([]byte, error)

type TestIamPermissionsRequest 

type TestIamPermissionsRequest struct {
	// Permissions: REQUIRED: The set of permissions to check for the
	// 'resource'.
	// Permissions with wildcards (such as '*' or 'storage.*') are not
	// allowed.
	// Allowed permissions are&#58;
	//
	// * `genomics.datasets.create`
	// * `genomics.datasets.delete`
	// * `genomics.datasets.get`
	// * `genomics.datasets.list`
	// * `genomics.datasets.update`
	// * `genomics.datasets.getIamPolicy`
	// * `genomics.datasets.setIamPolicy`
	Permissions []string `json:"permissions,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Permissions") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Permissions") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

TestIamPermissionsRequest: Request message for `TestIamPermissions` method.

func (*TestIamPermissionsRequest) MarshalJSON 

func (s *TestIamPermissionsRequest) MarshalJSON() ([]byte, error)

type TestIamPermissionsResponse 

type TestIamPermissionsResponse struct {
	// Permissions: A subset of `TestPermissionsRequest.permissions` that
	// the caller is
	// allowed.
	Permissions []string `json:"permissions,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Permissions") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Permissions") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

TestIamPermissionsResponse: Response message for `TestIamPermissions` method.

func (*TestIamPermissionsResponse) MarshalJSON 

func (s *TestIamPermissionsResponse) MarshalJSON() ([]byte, error)

type Transcript 

type Transcript struct {
	// CodingSequence: The range of the coding sequence for this transcript,
	// if any. To determine
	// the exact ranges of coding sequence, intersect this range with those
	// of the
	// exons, if any. If there are any
	// exons, the
	// codingSequence must start
	// and end within them.
	//
	// Note that in some cases, the reference genome will not exactly match
	// the
	// observed mRNA transcript e.g. due to variance in the source genome
	// from
	// reference. In these cases,
	// exon.frame will not necessarily
	// match the expected reference reading frame and coding exon reference
	// bases
	// cannot necessarily be concatenated to produce the original transcript
	// mRNA.
	CodingSequence *CodingSequence `json:"codingSequence,omitempty"`

	// Exons: The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that
	// compose
	// this transcript. This field should be unset for genomes where
	// transcript
	// splicing does not occur, for example prokaryotes.
	//
	// Introns are regions of the transcript that are not included in
	// the
	// spliced RNA product. Though not explicitly modeled here, intron
	// ranges can
	// be deduced; all regions of this transcript that are not exons are
	// introns.
	//
	// Exonic sequences do not necessarily code for a translational
	// product
	// (amino acids). Only the regions of exons bounded by
	// the
	// codingSequence correspond
	// to coding DNA sequence.
	//
	// Exons are ordered by start position and may not overlap.
	Exons []*Exon `json:"exons,omitempty"`

	// GeneId: The annotation ID of the gene from which this transcript is
	// transcribed.
	GeneId string `json:"geneId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CodingSequence") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CodingSequence") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

Transcript: A transcript represents the assertion that a particular region of the reference genome may be transcribed as RNA.

func (*Transcript) MarshalJSON 

func (s *Transcript) MarshalJSON() ([]byte, error)

type UndeleteDatasetRequest 

type UndeleteDatasetRequest struct {
}

type Variant 

type Variant struct {
	// AlternateBases: The bases that appear instead of the reference bases.
	AlternateBases []string `json:"alternateBases,omitempty"`

	// Calls: The variant calls for this particular variant. Each one
	// represents the
	// determination of genotype with respect to this variant.
	Calls []*VariantCall `json:"calls,omitempty"`

	// Created: The date this variant was created, in milliseconds from the
	// epoch.
	Created int64 `json:"created,omitempty,string"`

	// End: The end position (0-based) of this variant. This corresponds to
	// the first
	// base after the last base in the reference allele. So, the length
	// of
	// the reference allele is (end - start). This is useful for
	// variants
	// that don't explicitly give alternate bases, for example large
	// deletions.
	End int64 `json:"end,omitempty,string"`

	// Filter: A list of filters (normally quality filters) this variant has
	// failed.
	// `PASS` indicates this variant has passed all filters.
	Filter []string `json:"filter,omitempty"`

	// Id: The server-generated variant ID, unique across all variants.
	Id string `json:"id,omitempty"`

	// Info: A map of additional variant information. This must be of the
	// form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// Names: Names for the variant, for example a RefSNP ID.
	Names []string `json:"names,omitempty"`

	// Quality: A measure of how likely this variant is to be real.
	// A higher value is better.
	Quality float64 `json:"quality,omitempty"`

	// ReferenceBases: The reference bases for this variant. They start at
	// the given
	// position.
	ReferenceBases string `json:"referenceBases,omitempty"`

	// ReferenceName: The reference on which this variant occurs.
	// (such as `chr20` or `X`)
	ReferenceName string `json:"referenceName,omitempty"`

	// Start: The position at which this variant occurs (0-based).
	// This corresponds to the first base of the string of reference bases.
	Start int64 `json:"start,omitempty,string"`

	// VariantSetId: The ID of the variant set this variant belongs to.
	VariantSetId string `json:"variantSetId,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "AlternateBases") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AlternateBases") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

Variant: A variant represents a change in DNA sequence relative to a reference sequence. For example, a variant could represent a SNP or an insertion. Variants belong to a variant set.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Each of the calls on a variant represent a determination of genotype with respect to that variant. For example, a call might assign probability of 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call belongs to a call set, which contains related calls typically from one sample.

func (*Variant) MarshalJSON 

func (s *Variant) MarshalJSON() ([]byte, error)

func (*Variant) UnmarshalJSON 

func (s *Variant) UnmarshalJSON(data []byte) error

type VariantAnnotation 

type VariantAnnotation struct {
	// AlternateBases: The alternate allele for this variant. If multiple
	// alternate alleles
	// exist at this location, create a separate variant for each one, as
	// they
	// may represent distinct conditions.
	AlternateBases string `json:"alternateBases,omitempty"`

	// ClinicalSignificance: Describes the clinical significance of a
	// variant.
	// It is adapted from the ClinVar controlled vocabulary for
	// clinical
	// significance described
	// at:
	// http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
	//
	// Possible values:
	//   "CLINICAL_SIGNIFICANCE_UNSPECIFIED"
	//   "CLINICAL_SIGNIFICANCE_OTHER" - `OTHER` should be used when no
	// other clinical significance
	// value will suffice.
	//   "UNCERTAIN"
	//   "BENIGN"
	//   "LIKELY_BENIGN"
	//   "LIKELY_PATHOGENIC"
	//   "PATHOGENIC"
	//   "DRUG_RESPONSE"
	//   "HISTOCOMPATIBILITY"
	//   "CONFERS_SENSITIVITY"
	//   "RISK_FACTOR"
	//   "ASSOCIATION"
	//   "PROTECTIVE"
	//   "MULTIPLE_REPORTED" - `MULTIPLE_REPORTED` should be used when
	// multiple clinical
	// signficances are reported for a variant. The original
	// clinical
	// significance values may be provided in the `info` field.
	ClinicalSignificance string `json:"clinicalSignificance,omitempty"`

	// Conditions: The set of conditions associated with this variant.
	// A condition describes the way a variant influences human health.
	Conditions []*ClinicalCondition `json:"conditions,omitempty"`

	// Effect: Effect of the variant on the coding sequence.
	//
	// Possible values:
	//   "EFFECT_UNSPECIFIED"
	//   "EFFECT_OTHER" - `EFFECT_OTHER` should be used when no other
	// Effect
	// will suffice.
	//   "FRAMESHIFT" - `FRAMESHIFT` indicates a mutation in which the
	// insertion or
	// deletion of nucleotides resulted in a frameshift change.
	//   "FRAME_PRESERVING_INDEL" - `FRAME_PRESERVING_INDEL` indicates a
	// mutation in which a
	// multiple of three nucleotides has been inserted or deleted,
	// resulting
	// in no change to the reading frame of the coding sequence.
	//   "SYNONYMOUS_SNP" - `SYNONYMOUS_SNP` indicates a single nucleotide
	// polymorphism
	// mutation that results in no amino acid change.
	//   "NONSYNONYMOUS_SNP" - `NONSYNONYMOUS_SNP` indicates a single
	// nucleotide
	// polymorphism mutation that results in an amino acid change.
	//   "STOP_GAIN" - `STOP_GAIN` indicates a mutation that leads to the
	// creation
	// of a stop codon at the variant site. Frameshift mutations
	// creating
	// downstream stop codons do not count as `STOP_GAIN`.
	//   "STOP_LOSS" - `STOP_LOSS` indicates a mutation that eliminates
	// a
	// stop codon at the variant site.
	//   "SPLICE_SITE_DISRUPTION" - `SPLICE_SITE_DISRUPTION` indicates that
	// this variant is
	// found in a splice site for the associated transcript, and alters
	// the
	// normal splicing pattern.
	Effect string `json:"effect,omitempty"`

	// GeneId: Google annotation ID of the gene affected by this variant.
	// This should
	// be provided when the variant is created.
	GeneId string `json:"geneId,omitempty"`

	// TranscriptIds: Google annotation IDs of the transcripts affected by
	// this variant. These
	// should be provided when the variant is created.
	TranscriptIds []string `json:"transcriptIds,omitempty"`

	// Type: Type has been adapted from ClinVar's list of variant types.
	//
	// Possible values:
	//   "TYPE_UNSPECIFIED"
	//   "TYPE_OTHER" - `TYPE_OTHER` should be used when no other Type will
	// suffice.
	// Further explanation of the variant type may be included in the
	// info field.
	//   "INSERTION" - `INSERTION` indicates an insertion.
	//   "DELETION" - `DELETION` indicates a deletion.
	//   "SUBSTITUTION" - `SUBSTITUTION` indicates a block substitution
	// of
	// two or more nucleotides.
	//   "SNP" - `SNP` indicates a single nucleotide polymorphism.
	//   "STRUCTURAL" - `STRUCTURAL` indicates a large structural
	// variant,
	// including chromosomal fusions, inversions, etc.
	//   "CNV" - `CNV` indicates a variation in copy number.
	Type string `json:"type,omitempty"`

	// ForceSendFields is a list of field names (e.g. "AlternateBases") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AlternateBases") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

func (*VariantAnnotation) MarshalJSON 

func (s *VariantAnnotation) MarshalJSON() ([]byte, error)

type VariantCall 

type VariantCall struct {
	// CallSetId: The ID of the call set this variant call belongs to.
	CallSetId string `json:"callSetId,omitempty"`

	// CallSetName: The name of the call set this variant call belongs to.
	CallSetName string `json:"callSetName,omitempty"`

	// Genotype: The genotype of this variant call. Each value represents
	// either the value
	// of the `referenceBases` field or a 1-based index
	// into
	// `alternateBases`. If a variant had a `referenceBases`
	// value of `T` and an `alternateBases`
	// value of `["A", "C"]`, and the `genotype` was
	// `[2, 1]`, that would mean the call
	// represented the heterozygous value `CA` for this variant.
	// If the `genotype` was instead `[0, 1]`, the
	// represented value would be `TA`. Ordering of the
	// genotype values is important if the `phaseset` is present.
	// If a genotype is not called (that is, a `.` is present in the
	// GT string) -1 is returned.
	Genotype []int64 `json:"genotype,omitempty"`

	// GenotypeLikelihood: The genotype likelihoods for this variant call.
	// Each array entry
	// represents how likely a specific genotype is for this call. The
	// value
	// ordering is defined by the GL tag in the VCF spec.
	// If Phred-scaled genotype likelihood scores (PL) are available
	// and
	// log10(P) genotype likelihood scores (GL) are not, PL scores are
	// converted
	// to GL scores.  If both are available, PL scores are stored in `info`.
	GenotypeLikelihood []float64 `json:"genotypeLikelihood,omitempty"`

	// Info: A map of additional variant call information. This must be of
	// the form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// Phaseset: If this field is present, this variant call's genotype
	// ordering implies
	// the phase of the bases and is consistent with any other variant calls
	// in
	// the same reference sequence which have the same phaseset value.
	// When importing data from VCF, if the genotype data was phased but
	// no
	// phase set was specified this field will be set to `*`.
	Phaseset string `json:"phaseset,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CallSetId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CallSetId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

VariantCall: A call represents the determination of genotype with respect to a particular variant. It may include associated information such as quality and phasing. For example, a call might assign a probability of 0.32 to the occurrence of a SNP named rs1234 in a call set with the name NA12345.

func (*VariantCall) MarshalJSON 

func (s *VariantCall) MarshalJSON() ([]byte, error)

type VariantSet 

type VariantSet struct {
	// DatasetId: The dataset to which this variant set belongs.
	DatasetId string `json:"datasetId,omitempty"`

	// Description: A textual description of this variant set.
	Description string `json:"description,omitempty"`

	// Id: The server-generated variant set ID, unique across all variant
	// sets.
	Id string `json:"id,omitempty"`

	// Metadata: The metadata associated with this variant set.
	Metadata []*VariantSetMetadata `json:"metadata,omitempty"`

	// Name: User-specified, mutable name.
	Name string `json:"name,omitempty"`

	// ReferenceBounds: A list of all references used by the variants in a
	// variant set
	// with associated coordinate upper bounds for each one.
	ReferenceBounds []*ReferenceBound `json:"referenceBounds,omitempty"`

	// ReferenceSetId: The reference set to which the variant set is mapped.
	// The reference set
	// describes the alignment provenance of the variant set, while
	// the
	// `referenceBounds` describe the shape of the actual variant data.
	// The
	// reference set's reference names are a superset of those found in
	// the
	// `referenceBounds`.
	//
	// For example, given a variant set that is mapped to the GRCh38
	// reference set
	// and contains a single variant on reference 'X', `referenceBounds`
	// would
	// contain only an entry for 'X', while the associated reference
	// set
	// enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
	ReferenceSetId string `json:"referenceSetId,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "DatasetId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DatasetId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

VariantSet: A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantSet) MarshalJSON 

func (s *VariantSet) MarshalJSON() ([]byte, error)

type VariantSetMetadata 

type VariantSetMetadata struct {
	// Description: A textual description of this metadata.
	Description string `json:"description,omitempty"`

	// Id: User-provided ID field, not enforced by this API.
	// Two or more pieces of structured metadata with identical
	// id and key fields are considered equivalent.
	Id string `json:"id,omitempty"`

	// Info: Remaining structured metadata key-value pairs. This must be of
	// the form
	// map<string, string[]> (string key mapping to a list of string
	// values).
	Info map[string][]interface{} `json:"info,omitempty"`

	// Key: The top-level key.
	Key string `json:"key,omitempty"`

	// Number: The number of values that can be included in a field
	// described by this
	// metadata.
	Number string `json:"number,omitempty"`

	// Type: The type of data. Possible types include: Integer, Float,
	// Flag, Character, and String.
	//
	// Possible values:
	//   "TYPE_UNSPECIFIED"
	//   "INTEGER"
	//   "FLOAT"
	//   "FLAG"
	//   "CHARACTER"
	//   "STRING"
	Type string `json:"type,omitempty"`

	// Value: The value field for simple metadata
	Value string `json:"value,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Description") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Description") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

VariantSetMetadata: Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.

func (*VariantSetMetadata) MarshalJSON 

func (s *VariantSetMetadata) MarshalJSON() ([]byte, error)

type VariantsCreateCall 

type VariantsCreateCall struct {
	// contains filtered or unexported fields
}

func (*VariantsCreateCall) Context 

func (c *VariantsCreateCall) Context(ctx context.Context) *VariantsCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsCreateCall) Do 

func (c *VariantsCreateCall) Do(opts ...googleapi.CallOption) (*Variant, error)

Do executes the "genomics.variants.create" call. Exactly one of *Variant or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Variant.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsCreateCall) Fields 

func (c *VariantsCreateCall) Fields(s ...googleapi.Field) *VariantsCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsCreateCall) Header 

func (c *VariantsCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type VariantsDeleteCall 

type VariantsDeleteCall struct {
	// contains filtered or unexported fields
}

func (*VariantsDeleteCall) Context 

func (c *VariantsDeleteCall) Context(ctx context.Context) *VariantsDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsDeleteCall) Do 

func (c *VariantsDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.variants.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsDeleteCall) Fields 

func (c *VariantsDeleteCall) Fields(s ...googleapi.Field) *VariantsDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsDeleteCall) Header 

func (c *VariantsDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type VariantsGetCall 

type VariantsGetCall struct {
	// contains filtered or unexported fields
}

func (*VariantsGetCall) Context 

func (c *VariantsGetCall) Context(ctx context.Context) *VariantsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsGetCall) Do 

func (c *VariantsGetCall) Do(opts ...googleapi.CallOption) (*Variant, error)

Do executes the "genomics.variants.get" call. Exactly one of *Variant or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Variant.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsGetCall) Fields 

func (c *VariantsGetCall) Fields(s ...googleapi.Field) *VariantsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsGetCall) Header 

func (c *VariantsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*VariantsGetCall) IfNoneMatch 

func (c *VariantsGetCall) IfNoneMatch(entityTag string) *VariantsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type VariantsImportCall 

type VariantsImportCall struct {
	// contains filtered or unexported fields
}

func (*VariantsImportCall) Context 

func (c *VariantsImportCall) Context(ctx context.Context) *VariantsImportCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsImportCall) Do 

func (c *VariantsImportCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.variants.import" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsImportCall) Fields 

func (c *VariantsImportCall) Fields(s ...googleapi.Field) *VariantsImportCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsImportCall) Header 

func (c *VariantsImportCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type VariantsMergeCall 

type VariantsMergeCall struct {
	// contains filtered or unexported fields
}

func (*VariantsMergeCall) Context 

func (c *VariantsMergeCall) Context(ctx context.Context) *VariantsMergeCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsMergeCall) Do 

func (c *VariantsMergeCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.variants.merge" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsMergeCall) Fields 

func (c *VariantsMergeCall) Fields(s ...googleapi.Field) *VariantsMergeCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsMergeCall) Header 

func (c *VariantsMergeCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type VariantsPatchCall 

type VariantsPatchCall struct {
	// contains filtered or unexported fields
}

func (*VariantsPatchCall) Context 

func (c *VariantsPatchCall) Context(ctx context.Context) *VariantsPatchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsPatchCall) Do 

func (c *VariantsPatchCall) Do(opts ...googleapi.CallOption) (*Variant, error)

Do executes the "genomics.variants.patch" call. Exactly one of *Variant or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Variant.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsPatchCall) Fields 

func (c *VariantsPatchCall) Fields(s ...googleapi.Field) *VariantsPatchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsPatchCall) Header 

func (c *VariantsPatchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*VariantsPatchCall) UpdateMask 

func (c *VariantsPatchCall) UpdateMask(updateMask string) *VariantsPatchCall

UpdateMask sets the optional parameter "updateMask": An optional mask specifying which fields to update. At this time, mutable fields are names and info. Acceptable values are "names" and "info". If unspecified, all mutable fields will be updated.

type VariantsSearchCall 

type VariantsSearchCall struct {
	// contains filtered or unexported fields
}

func (*VariantsSearchCall) Context 

func (c *VariantsSearchCall) Context(ctx context.Context) *VariantsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsSearchCall) Do 

func (c *VariantsSearchCall) Do(opts ...googleapi.CallOption) (*SearchVariantsResponse, error)

Do executes the "genomics.variants.search" call. Exactly one of *SearchVariantsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchVariantsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsSearchCall) Fields 

func (c *VariantsSearchCall) Fields(s ...googleapi.Field) *VariantsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsSearchCall) Header 

func (c *VariantsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*VariantsSearchCall) Pages 

func (c *VariantsSearchCall) Pages(ctx context.Context, f func(*SearchVariantsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type VariantsService 

type VariantsService struct {
	// contains filtered or unexported fields
}

func NewVariantsService 

func NewVariantsService(s *Service) *VariantsService

func (*VariantsService) Create 

func (r *VariantsService) Create(variant *Variant) *VariantsCreateCall

Create: Creates a new variant.

For the definitions of variants and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantsService) Delete 

func (r *VariantsService) Delete(variantId string) *VariantsDeleteCall

Delete: Deletes a variant.

For the definitions of variants and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantsService) Get 

func (r *VariantsService) Get(variantId string) *VariantsGetCall

Get: Gets a variant by ID.

For the definitions of variants and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantsService) Import 

func (r *VariantsService) Import(importvariantsrequest *ImportVariantsRequest) *VariantsImportCall

Import: Creates variant data by asynchronously importing the provided information.

For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

The variants for import will be merged with any existing variant that matches its reference sequence, start, end, reference bases, and alternative bases. If no such variant exists, a new one will be created.

When variants are merged, the call information from the new variant is added to the existing variant, and Variant info fields are merged as specified in infoMergeConfig. As a special case, for single-sample VCF files, QUAL and FILTER fields will be moved to the call level; these are sometimes interpreted in a call-specific context. Imported VCF headers are appended to the metadata already in a variant set.

func (*VariantsService) Merge 

func (r *VariantsService) Merge(mergevariantsrequest *MergeVariantsRequest) *VariantsMergeCall

Merge: Merges the given variants with existing variants.

For the definitions of variants and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Each variant will be merged with an existing variant that matches its reference sequence, start, end, reference bases, and alternative bases. If no such variant exists, a new one will be created.

When variants are merged, the call information from the new variant is added to the existing variant. Variant info fields are merged as specified in the infoMergeConfig field of the MergeVariantsRequest.

Please exercise caution when using this method! It is easy to introduce mistakes in existing variants and difficult to back out of them. For example, suppose you were trying to merge a new variant with an existing one and both variants contain calls that belong to callsets with the same callset ID. 

// Existing variant - irrelevant fields trimmed for clarity
{
    "variantSetId": "10473108253681171589",
    "referenceName": "1",
    "start": "10582",
    "referenceBases": "G",
    "alternateBases": [
        "A"
    ],
    "calls": [
        {
            "callSetId": "10473108253681171589-0",
            "callSetName": "CALLSET0",
            "genotype": [
                0,
                1
            ],
        }
    ]
}

// New variant with conflicting call information
{
    "variantSetId": "10473108253681171589",
    "referenceName": "1",
    "start": "10582",
    "referenceBases": "G",
    "alternateBases": [
        "A"
    ],
    "calls": [
        {
            "callSetId": "10473108253681171589-0",
            "callSetName": "CALLSET0",
            "genotype": [
                1,
                1
            ],
        }
    ]
}

The resulting merged variant would overwrite the existing calls with those from the new variant: 

{
    "variantSetId": "10473108253681171589",
    "referenceName": "1",
    "start": "10582",
    "referenceBases": "G",
    "alternateBases": [
        "A"
    ],
    "calls": [
        {
            "callSetId": "10473108253681171589-0",
            "callSetName": "CALLSET0",
            "genotype": [
                1,
                1
            ],
        }
    ]
}

This may be the desired outcome, but it is up to the user to determine if if that is indeed the case.

func (*VariantsService) Patch 

func (r *VariantsService) Patch(variantId string, variant *Variant) *VariantsPatchCall

Patch: Updates a variant.

For the definitions of variants and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

This method supports patch semantics. Returns the modified variant without its calls.

func (*VariantsService) Search 

func (r *VariantsService) Search(searchvariantsrequest *SearchVariantsRequest) *VariantsSearchCall

Search: Gets a list of variants matching the criteria.

For the definitions of variants and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.searchVariants](https://g ithub.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmet hods.avdl#L126).

type VariantsetsCreateCall 

type VariantsetsCreateCall struct {
	// contains filtered or unexported fields
}

func (*VariantsetsCreateCall) Context 

func (c *VariantsetsCreateCall) Context(ctx context.Context) *VariantsetsCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsetsCreateCall) Do 

func (c *VariantsetsCreateCall) Do(opts ...googleapi.CallOption) (*VariantSet, error)

Do executes the "genomics.variantsets.create" call. Exactly one of *VariantSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *VariantSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsetsCreateCall) Fields 

func (c *VariantsetsCreateCall) Fields(s ...googleapi.Field) *VariantsetsCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsetsCreateCall) Header 

func (c *VariantsetsCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type VariantsetsDeleteCall 

type VariantsetsDeleteCall struct {
	// contains filtered or unexported fields
}

func (*VariantsetsDeleteCall) Context 

func (c *VariantsetsDeleteCall) Context(ctx context.Context) *VariantsetsDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsetsDeleteCall) Do 

func (c *VariantsetsDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.variantsets.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsetsDeleteCall) Fields 

func (c *VariantsetsDeleteCall) Fields(s ...googleapi.Field) *VariantsetsDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsetsDeleteCall) Header 

func (c *VariantsetsDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type VariantsetsExportCall 

type VariantsetsExportCall struct {
	// contains filtered or unexported fields
}

func (*VariantsetsExportCall) Context 

func (c *VariantsetsExportCall) Context(ctx context.Context) *VariantsetsExportCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsetsExportCall) Do 

func (c *VariantsetsExportCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.variantsets.export" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsetsExportCall) Fields 

func (c *VariantsetsExportCall) Fields(s ...googleapi.Field) *VariantsetsExportCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsetsExportCall) Header 

func (c *VariantsetsExportCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type VariantsetsGetCall 

type VariantsetsGetCall struct {
	// contains filtered or unexported fields
}

func (*VariantsetsGetCall) Context 

func (c *VariantsetsGetCall) Context(ctx context.Context) *VariantsetsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsetsGetCall) Do 

func (c *VariantsetsGetCall) Do(opts ...googleapi.CallOption) (*VariantSet, error)

Do executes the "genomics.variantsets.get" call. Exactly one of *VariantSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *VariantSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsetsGetCall) Fields 

func (c *VariantsetsGetCall) Fields(s ...googleapi.Field) *VariantsetsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsetsGetCall) Header 

func (c *VariantsetsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*VariantsetsGetCall) IfNoneMatch 

func (c *VariantsetsGetCall) IfNoneMatch(entityTag string) *VariantsetsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type VariantsetsPatchCall 

type VariantsetsPatchCall struct {
	// contains filtered or unexported fields
}

func (*VariantsetsPatchCall) Context 

func (c *VariantsetsPatchCall) Context(ctx context.Context) *VariantsetsPatchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsetsPatchCall) Do 

func (c *VariantsetsPatchCall) Do(opts ...googleapi.CallOption) (*VariantSet, error)

Do executes the "genomics.variantsets.patch" call. Exactly one of *VariantSet or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *VariantSet.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsetsPatchCall) Fields 

func (c *VariantsetsPatchCall) Fields(s ...googleapi.Field) *VariantsetsPatchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsetsPatchCall) Header 

func (c *VariantsetsPatchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*VariantsetsPatchCall) UpdateMask 

func (c *VariantsetsPatchCall) UpdateMask(updateMask string) *VariantsetsPatchCall

UpdateMask sets the optional parameter "updateMask": An optional mask specifying which fields to update. Supported fields:

* metadata. * name. * description.

Leaving `updateMask` unset is equivalent to specifying all mutable fields.

type VariantsetsSearchCall 

type VariantsetsSearchCall struct {
	// contains filtered or unexported fields
}

func (*VariantsetsSearchCall) Context 

func (c *VariantsetsSearchCall) Context(ctx context.Context) *VariantsetsSearchCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*VariantsetsSearchCall) Do 

func (c *VariantsetsSearchCall) Do(opts ...googleapi.CallOption) (*SearchVariantSetsResponse, error)

Do executes the "genomics.variantsets.search" call. Exactly one of *SearchVariantSetsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *SearchVariantSetsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*VariantsetsSearchCall) Fields 

func (c *VariantsetsSearchCall) Fields(s ...googleapi.Field) *VariantsetsSearchCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*VariantsetsSearchCall) Header 

func (c *VariantsetsSearchCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*VariantsetsSearchCall) Pages 

func (c *VariantsetsSearchCall) Pages(ctx context.Context, f func(*SearchVariantSetsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type VariantsetsService 

type VariantsetsService struct {
	// contains filtered or unexported fields
}

func NewVariantsetsService 

func NewVariantsetsService(s *Service) *VariantsetsService

func (*VariantsetsService) Create 

func (r *VariantsetsService) Create(variantset *VariantSet) *VariantsetsCreateCall

Create: Creates a new variant set.

For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

The provided variant set must have a valid `datasetId` set - all other fields are optional. Note that the `id` field will be ignored, as this is assigned by the server.

func (*VariantsetsService) Delete 

func (r *VariantsetsService) Delete(variantSetId string) *VariantsetsDeleteCall

Delete: Deletes a variant set including all variants, call sets, and calls within. This is not reversible.

For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantsetsService) Export 

func (r *VariantsetsService) Export(variantSetId string, exportvariantsetrequest *ExportVariantSetRequest) *VariantsetsExportCall

Export: Exports variant set data to an external destination.

For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantsetsService) Get 

func (r *VariantsetsService) Get(variantSetId string) *VariantsetsGetCall

Get: Gets a variant set by ID.

For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantsetsService) Patch 

func (r *VariantsetsService) Patch(variantSetId string, variantset *VariantSet) *VariantsetsPatchCall

Patch: Updates a variant set using patch semantics.

For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

func (*VariantsetsService) Search 

func (r *VariantsetsService) Search(searchvariantsetsrequest *SearchVariantSetsRequest) *VariantsetsSearchCall

Search: Returns a list of all variant sets matching search criteria.

For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-goo gle-genomics)

Implements [GlobalAllianceApi.searchVariantSets](https: //github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variant methods.avdl#L49).

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