fetch

Documentation

Index

• Constants
• func BioTools(endpoints *types.BioToolsEndpoints, BapiClis *types.BapiClisT, f func(), ...) bool
• func Cligov(endpoints *types.CligovEndpoints, BapiClis *types.BapiClisT, f func(), ...) bool
• func Covid19(endpoints *types.Covid19Endpoints, bapiClis *types.BapiClisT, f func(), ...) bool
• func CrossRef(endpoints *types.CrossRefEndpoints, bapiClis *types.BapiClisT, f func(), ...) bool
• func Dataset2tools(endpoints *types.Datasets2toolsEndpoints, BapiClis *types.BapiClisT, ...)
• func Egafetch(ega, fileID, outDir string, opt *cnet.Params) (err error)
• func Gdc(endpoint *types.GdcEndpoints, BapiClis *types.BapiClisT, of io.Writer)
• func GetReq(siteName, url string, bapiClis *types.BapiClisT, netopt *cnet.Params, ...)
• func GetReq2(url string, bapiClis *types.BapiClisT, netopt *cnet.Params, of io.Writer)
• func ListEnsembl(quite bool)
• func MgRast(endpoints *types.MgRastEndpoints, bapiClis *types.BapiClisT, f func(), ...) bool
• func Ncbi(bapiClis *types.BapiClisT, ncbiClis *types.NcbiClisT, of io.Writer)
• func PostReq(siteName, url string, data []byte, bapiClis *types.BapiClisT, ...)
• type BiomartEndpoints

Constants

const BioToolsHost = "https://bio.tools/api/tool/"

const CligovHost = "https://clinicaltrials.gov/api/"

const Covid19Host = "https://api.covid19api.com/"

const CrossRefHost = "https://www.crossref.org/guestquery"

const Dataset2toolsHost = "http://amp.pharm.mssm.edu/datasets2tools/api/search?"

const GdcAPIHost = "https://api.gdc.cancer.gov"

GdcAPIHost GDC API

const GdcAPIHostLegacy = "https://api.gdc.cancer.gov/legacy"

GdcAPIHostLegacy GDC legacy API

const MgRastHost = "http://api.mg-rast.org/"

Functions

func BioTools

func BioTools(endpoints *types.BioToolsEndpoints, BapiClis *types.BapiClisT, f func(), of io.Writer) bool

BioTools access https://clinicaltrials.gov API

func Cligov

func Cligov(endpoints *types.CligovEndpoints, BapiClis *types.BapiClisT, f func(), of io.Writer) bool

Cligov access https://clinicaltrials.gov API

func Covid19

func Covid19(endpoints *types.Covid19Endpoints, bapiClis *types.BapiClisT, f func(), of io.Writer) bool

Covid19 access api.covid19api.com API

func CrossRef

func CrossRef(endpoints *types.CrossRefEndpoints, bapiClis *types.BapiClisT, f func(), of io.Writer) bool

CrossRef access https://clinicaltrials.gov API

func Dataset2tools

func Dataset2tools(endpoints *types.Datasets2toolsEndpoints, BapiClis *types.BapiClisT, of io.Writer)

Dataset2tools access http://amp.pharm.mssm.edu/datasets2tools/ API

func Egafetch

func Egafetch(ega, fileID, outDir string, opt *cnet.Params) (err error)

Egafetch get EGA files

func Gdc

func Gdc(endpoint *types.GdcEndpoints, BapiClis *types.BapiClisT, of io.Writer)

Gdc accesss https://api.gdc.cancer.gov data

func GetReq

func GetReq(siteName, url string, bapiClis *types.BapiClisT, netopt *cnet.Params, of io.Writer)

func GetReq2

func GetReq2(url string, bapiClis *types.BapiClisT, netopt *cnet.Params, of io.Writer)

func ListEnsembl

func ListEnsembl(quite bool)

ListEnsembl returns JSON string of BioMart databases to which biomaRt can connect to. By default all public BioMart databases are displayed.

func MgRast

func MgRast(endpoints *types.MgRastEndpoints, bapiClis *types.BapiClisT, f func(), of io.Writer) bool

MgRast access https://clinicaltrials.gov API

func Ncbi

func Ncbi(bapiClis *types.BapiClisT, ncbiClis *types.NcbiClisT, of io.Writer)

Ncbi modified from https://github.com/biogo/ncbi BSD license

func PostReq

func PostReq(siteName, url string, data []byte, bapiClis *types.BapiClisT, netopt *cnet.Params, of io.Writer)

Types

type BiomartEndpoints

type BiomartEndpoints struct {
	Martservice bool
}