genomics

package
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 Go to latest Published: Oct 10, 2016 License: BSD-3-Clause Imports: 13 Imported by: 0

Documentation

Overview

Package genomics provides access to the Genomics API.

See https://cloud.google.com/genomics/

Usage example: 

import "google.golang.org/api/genomics/v1alpha2"
...
genomicsService, err := genomics.New(oauthHttpClient)

Index

Constants

View Source 
const (
	// View and manage your data across Google Cloud Platform services
	CloudPlatformScope = "https://www.googleapis.com/auth/cloud-platform"

	// View and manage your Google Compute Engine resources
	ComputeScope = "https://www.googleapis.com/auth/compute"

	// View and manage Genomics data
	GenomicsScope = "https://www.googleapis.com/auth/genomics"
)

OAuth2 scopes used by this API.

Variables

This section is empty.

Functions

This section is empty.

Types

type CancelOperationRequest 

type CancelOperationRequest struct {
}

CancelOperationRequest: The request message for Operations.CancelOperation.

type ComputeEngine 

type ComputeEngine struct {
	// DiskNames: The names of the disks that were created for this
	// pipeline.
	DiskNames []string `json:"diskNames,omitempty"`

	// InstanceName: The instance on which the operation is running.
	InstanceName string `json:"instanceName,omitempty"`

	// MachineType: The machine type of the instance.
	MachineType string `json:"machineType,omitempty"`

	// Zone: The availability zone in which the instance resides.
	Zone string `json:"zone,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DiskNames") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DiskNames") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ComputeEngine: Describes a Compute Engine resource that is being managed by a running pipeline.

func (*ComputeEngine) MarshalJSON 

func (s *ComputeEngine) MarshalJSON() ([]byte, error)

type ControllerConfig 

type ControllerConfig struct {
	Cmd string `json:"cmd,omitempty"`

	Disks map[string]string `json:"disks,omitempty"`

	GcsLogPath string `json:"gcsLogPath,omitempty"`

	GcsSinks map[string]RepeatedString `json:"gcsSinks,omitempty"`

	GcsSources map[string]RepeatedString `json:"gcsSources,omitempty"`

	Image string `json:"image,omitempty"`

	MachineType string `json:"machineType,omitempty"`

	Vars map[string]string `json:"vars,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Cmd") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Cmd") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ControllerConfig: Stores the information that the controller will fetch from the server in order to run. Should only be used by VMs created by the Pipelines Service and not by end users.

func (*ControllerConfig) MarshalJSON 

func (s *ControllerConfig) MarshalJSON() ([]byte, error)

type Disk 

type Disk struct {
	// AutoDelete: Specifies whether or not to delete the disk when the
	// pipeline completes. This field is applicable only for newly created
	// disks. See
	// https://cloud.google.com/compute/docs/reference/latest/instances#resource for more details. By default, `autoDelete` is `false`. `autoDelete` will be enabled if set to `true` at create time or run
	// time.
	AutoDelete bool `json:"autoDelete,omitempty"`

	// MountPoint: Required at create time and cannot be overridden at run
	// time. Specifies the path in the docker container where files on this
	// disk should be located. For example, if `mountPoint` is `/mnt/disk`,
	// and the parameter has `localPath` `inputs/file.txt`, the docker
	// container can access the data at `/mnt/disk/inputs/file.txt`.
	MountPoint string `json:"mountPoint,omitempty"`

	// Name: Required. The name of the disk that can be used in the pipeline
	// parameters. Must be 1 - 63 characters. The name "boot" is reserved
	// for system use.
	Name string `json:"name,omitempty"`

	// ReadOnly: Specifies how a sourced-base persistent disk will be
	// mounted. See
	// https://cloud.google.com/compute/docs/disks/persistent-disks#use_multi_instances for more details. Can only be set at create
	// time.
	ReadOnly bool `json:"readOnly,omitempty"`

	// SizeGb: The size of the disk. Defaults to 500 (GB). This field is not
	// applicable for local SSD.
	SizeGb int64 `json:"sizeGb,omitempty"`

	// Source: The full or partial URL of the persistent disk to attach. See
	// https://cloud.google.com/compute/docs/reference/latest/instances#resource and https://cloud.google.com/compute/docs/disks/persistent-disks#snapshots for more
	// details.
	Source string `json:"source,omitempty"`

	// Type: Required. The type of the disk to create.
	//
	// Possible values:
	//   "TYPE_UNSPECIFIED"
	//   "PERSISTENT_HDD"
	//   "PERSISTENT_SSD"
	//   "LOCAL_SSD"
	Type string `json:"type,omitempty"`

	// ForceSendFields is a list of field names (e.g. "AutoDelete") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "AutoDelete") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Disk: A Google Compute Engine disk resource specification.

func (*Disk) MarshalJSON 

func (s *Disk) MarshalJSON() ([]byte, error)

type DockerExecutor 

type DockerExecutor struct {
	// Cmd: Required. The command or newline delimited script to run. The
	// command string will be executed within a bash shell. If the command
	// exits with a non-zero exit code, output parameter de-localization
	// will be skipped and the pipeline operation's `error` field will be
	// populated. Maximum command string length is 16384.
	Cmd string `json:"cmd,omitempty"`

	// ImageName: Required. Image name from either Docker Hub or Google
	// Container Registry. Users that run pipelines must have READ access to
	// the image.
	ImageName string `json:"imageName,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Cmd") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Cmd") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

DockerExecutor: The Docker execuctor specification.

func (*DockerExecutor) MarshalJSON 

func (s *DockerExecutor) MarshalJSON() ([]byte, error)

type Empty 

type Empty struct {
	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`
}

Empty: A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance: service Foo { rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty); } The JSON representation for `Empty` is empty JSON object `{}`.

type ImportReadGroupSetsResponse 

type ImportReadGroupSetsResponse struct {
	// ReadGroupSetIds: IDs of the read group sets that were created.
	ReadGroupSetIds []string `json:"readGroupSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ReadGroupSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ReadGroupSetIds") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

ImportReadGroupSetsResponse: The read group set import response.

func (*ImportReadGroupSetsResponse) MarshalJSON 

func (s *ImportReadGroupSetsResponse) MarshalJSON() ([]byte, error)

type ImportVariantsResponse 

type ImportVariantsResponse struct {
	// CallSetIds: IDs of the call sets created during the import.
	CallSetIds []string `json:"callSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CallSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "CallSetIds") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ImportVariantsResponse: The variant data import response.

func (*ImportVariantsResponse) MarshalJSON 

func (s *ImportVariantsResponse) MarshalJSON() ([]byte, error)

type ListOperationsResponse 

type ListOperationsResponse struct {
	// NextPageToken: The standard List next-page token.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// Operations: A list of operations that matches the specified filter in
	// the request.
	Operations []*Operation `json:"operations,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ListOperationsResponse: The response message for Operations.ListOperations.

func (*ListOperationsResponse) MarshalJSON 

func (s *ListOperationsResponse) MarshalJSON() ([]byte, error)

type ListPipelinesResponse 

type ListPipelinesResponse struct {
	// NextPageToken: The token to use to get the next page of results.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// Pipelines: The matched pipelines.
	Pipelines []*Pipeline `json:"pipelines,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "NextPageToken") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ListPipelinesResponse: The response of ListPipelines. Contains at most `pageSize` pipelines. If it contains `pageSize` pipelines, and more pipelines exist, then `nextPageToken` will be populated and should be used as the `pageToken` argument to a subsequent ListPipelines request.

func (*ListPipelinesResponse) MarshalJSON 

func (s *ListPipelinesResponse) MarshalJSON() ([]byte, error)

type LocalCopy 

type LocalCopy struct {
	// Disk: Required. The name of the disk where this parameter is located.
	// Can be the name of one of the disks specified in the Resources field,
	// or "boot", which represents the Docker instance's boot disk and has a
	// mount point of `/`.
	Disk string `json:"disk,omitempty"`

	// Path: Required. The path within the user's docker container where
	// this input should be localized to and from, relative to the specified
	// disk's mount point. For example: file.txt,
	Path string `json:"path,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Disk") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Disk") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

LocalCopy: LocalCopy defines how a remote file should be copied to and from the VM.

func (*LocalCopy) MarshalJSON 

func (s *LocalCopy) MarshalJSON() ([]byte, error)

type LoggingOptions 

type LoggingOptions struct {
	// GcsPath: The location in Google Cloud Storage to which the pipeline
	// logs will be copied. Can be specified as a fully qualified directory
	// path, in which case logs will be output with a unique identifier as
	// the filename in that directory, or as a fully specified path, which
	// must end in `.log`, in which case that path will be used, and the
	// user must ensure that logs are not overwritten. Stdout and stderr
	// logs from the run are also generated and output as `-stdout.log` and
	// `-stderr.log`.
	GcsPath string `json:"gcsPath,omitempty"`

	// ForceSendFields is a list of field names (e.g. "GcsPath") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "GcsPath") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

LoggingOptions: The logging options for the pipeline run.

func (*LoggingOptions) MarshalJSON 

func (s *LoggingOptions) MarshalJSON() ([]byte, error)

type Operation 

type Operation struct {
	// Done: If the value is `false`, it means the operation is still in
	// progress. If true, the operation is completed, and either `error` or
	// `response` is available.
	Done bool `json:"done,omitempty"`

	// Error: The error result of the operation in case of failure.
	Error *Status `json:"error,omitempty"`

	// Metadata: An OperationMetadata object. This will always be returned
	// with the Operation.
	Metadata OperationMetadata `json:"metadata,omitempty"`

	// Name: The server-assigned name, which is only unique within the same
	// service that originally returns it. For example:
	// `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
	Name string `json:"name,omitempty"`

	// Response: If importing ReadGroupSets, an ImportReadGroupSetsResponse
	// is returned. If importing Variants, an ImportVariantsResponse is
	// returned. For exports, an empty response is returned.
	Response OperationResponse `json:"response,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Done") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Done") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Operation: This resource represents a long-running operation that is the result of a network API call.

func (*Operation) MarshalJSON 

func (s *Operation) MarshalJSON() ([]byte, error)

type OperationEvent 

type OperationEvent struct {
	// Description: Required description of event.
	Description string `json:"description,omitempty"`

	// EndTime: Optional time of when event finished. An event can have a
	// start time and no finish time. If an event has a finish time, there
	// must be a start time.
	EndTime string `json:"endTime,omitempty"`

	// StartTime: Optional time of when event started.
	StartTime string `json:"startTime,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Description") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Description") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

OperationEvent: An event that occurred during an Operation.

func (*OperationEvent) MarshalJSON 

func (s *OperationEvent) MarshalJSON() ([]byte, error)

type OperationMetadata 

type OperationMetadata interface{}

type OperationMetadata1 

type OperationMetadata1 struct {
	// ClientId: Optionally provided by the caller when submitting the
	// request that creates the operation.
	ClientId string `json:"clientId,omitempty"`

	// CreateTime: The time at which the job was submitted to the Genomics
	// service.
	CreateTime string `json:"createTime,omitempty"`

	// EndTime: The time at which the job stopped running.
	EndTime string `json:"endTime,omitempty"`

	// Events: Optional event messages that were generated during the job's
	// execution. This also contains any warnings that were generated during
	// import or export.
	Events []*OperationEvent `json:"events,omitempty"`

	// ProjectId: The Google Cloud Project in which the job is scoped.
	ProjectId string `json:"projectId,omitempty"`

	// Request: The original request that started the operation. Note that
	// this will be in current version of the API. If the operation was
	// started with v1beta2 API and a GetOperation is performed on v1 API, a
	// v1 request will be returned.
	Request OperationMetadataRequest `json:"request,omitempty"`

	// RuntimeMetadata: Runtime metadata on this Operation.
	RuntimeMetadata OperationMetadataRuntimeMetadata `json:"runtimeMetadata,omitempty"`

	// StartTime: The time at which the job began to run.
	StartTime string `json:"startTime,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ClientId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ClientId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

OperationMetadata1: Metadata describing an Operation.

func (*OperationMetadata1) MarshalJSON 

func (s *OperationMetadata1) MarshalJSON() ([]byte, error)

type OperationMetadataRequest 

type OperationMetadataRequest interface{}

type OperationMetadataRuntimeMetadata 

type OperationMetadataRuntimeMetadata interface{}

type OperationResponse 

type OperationResponse interface{}

type OperationsCancelCall 

type OperationsCancelCall struct {
	// contains filtered or unexported fields
}

func (*OperationsCancelCall) Context 

func (c *OperationsCancelCall) Context(ctx context.Context) *OperationsCancelCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsCancelCall) Do 

func (c *OperationsCancelCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.operations.cancel" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsCancelCall) Fields 

func (c *OperationsCancelCall) Fields(s ...googleapi.Field) *OperationsCancelCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

type OperationsGetCall 

type OperationsGetCall struct {
	// contains filtered or unexported fields
}

func (*OperationsGetCall) Context 

func (c *OperationsGetCall) Context(ctx context.Context) *OperationsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsGetCall) Do 

func (c *OperationsGetCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.operations.get" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsGetCall) Fields 

func (c *OperationsGetCall) Fields(s ...googleapi.Field) *OperationsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsGetCall) IfNoneMatch 

func (c *OperationsGetCall) IfNoneMatch(entityTag string) *OperationsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type OperationsListCall 

type OperationsListCall struct {
	// contains filtered or unexported fields
}

func (*OperationsListCall) Context 

func (c *OperationsListCall) Context(ctx context.Context) *OperationsListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsListCall) Do 

func (c *OperationsListCall) Do(opts ...googleapi.CallOption) (*ListOperationsResponse, error)

Do executes the "genomics.operations.list" call. Exactly one of *ListOperationsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListOperationsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsListCall) Fields 

func (c *OperationsListCall) Fields(s ...googleapi.Field) *OperationsListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsListCall) Filter 

func (c *OperationsListCall) Filter(filter string) *OperationsListCall

Filter sets the optional parameter "filter": A string for filtering Operations. The following filter fields are supported: * projectId: Required. Corresponds to OperationMetadata.projectId. * createTime: The time this job was created, in seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=` and/or `= 1432140000` * `projectId = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND status = RUNNING`

func (*OperationsListCall) IfNoneMatch 

func (c *OperationsListCall) IfNoneMatch(entityTag string) *OperationsListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*OperationsListCall) PageSize 

func (c *OperationsListCall) PageSize(pageSize int64) *OperationsListCall

PageSize sets the optional parameter "pageSize": The maximum number of results to return. If unspecified, defaults to 256. The maximum value is 2048.

func (*OperationsListCall) PageToken 

func (c *OperationsListCall) PageToken(pageToken string) *OperationsListCall

PageToken sets the optional parameter "pageToken": The standard list page token.

func (*OperationsListCall) Pages 

func (c *OperationsListCall) Pages(ctx context.Context, f func(*ListOperationsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type OperationsService 

type OperationsService struct {
	// contains filtered or unexported fields
}

func NewOperationsService 

func NewOperationsService(s *Service) *OperationsService

func (*OperationsService) Cancel 

func (r *OperationsService) Cancel(name string, canceloperationrequest *CancelOperationRequest) *OperationsCancelCall

Cancel: Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation.

func (*OperationsService) Get 

func (r *OperationsService) Get(name string) *OperationsGetCall

Get: Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service.

func (*OperationsService) List 

func (r *OperationsService) List(name string) *OperationsListCall

List: Lists operations that match the specified filter in the request.

type Pipeline 

type Pipeline struct {
	// Description: User-specified description.
	Description string `json:"description,omitempty"`

	// Docker: Specifies the docker run information.
	Docker *DockerExecutor `json:"docker,omitempty"`

	// InputParameters: Input parameters of the pipeline.
	InputParameters []*PipelineParameter `json:"inputParameters,omitempty"`

	// Name: Required. A user specified pipeline name that does not have to
	// be unique. This name can be used for filtering Pipelines in
	// ListPipelines.
	Name string `json:"name,omitempty"`

	// OutputParameters: Output parameters of the pipeline.
	OutputParameters []*PipelineParameter `json:"outputParameters,omitempty"`

	// PipelineId: Unique pipeline id that is generated by the service when
	// CreatePipeline is called. Cannot be specified in the Pipeline used in
	// the CreatePipelineRequest, and will be populated in the response to
	// CreatePipeline and all subsequent Get and List calls. Indicates that
	// the service has registered this pipeline.
	PipelineId string `json:"pipelineId,omitempty"`

	// ProjectId: Required. The project in which to create the pipeline. The
	// caller must have WRITE access.
	ProjectId string `json:"projectId,omitempty"`

	// Resources: Required. Specifies resource requirements for the pipeline
	// run. Required fields: * minimumCpuCores * minimumRamGb
	Resources *PipelineResources `json:"resources,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Description") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Description") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Pipeline: The pipeline object. Represents a transformation from a set of input parameters to a set of output parameters. The transformation is defined as a docker image and command to run within that image. Each pipeline is run on a Google Compute Engine VM. A pipeline can be created with the `create` method and then later run with the `run` method, or a pipeline can be defined and run all at once with the `run` method.

func (*Pipeline) MarshalJSON 

func (s *Pipeline) MarshalJSON() ([]byte, error)

type PipelineParameter 

type PipelineParameter struct {
	// DefaultValue: The default value for this parameter. Can be overridden
	// at runtime. If `localCopy` is present, then this must be a Google
	// Cloud Storage path beginning with `gs://`.
	DefaultValue string `json:"defaultValue,omitempty"`

	// Description: Human-readable description.
	Description string `json:"description,omitempty"`

	// LocalCopy: If present, this parameter is marked for copying to and
	// from the VM. `LocalCopy` indicates where on the VM the file should
	// be. The value given to this parameter (either at runtime or using
	// `defaultValue`) must be the remote path where the file should be.
	LocalCopy *LocalCopy `json:"localCopy,omitempty"`

	// Name: Required. Name of the parameter - the pipeline runner uses this
	// string as the key to the input and output maps in RunPipeline.
	Name string `json:"name,omitempty"`

	// ForceSendFields is a list of field names (e.g. "DefaultValue") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "DefaultValue") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

PipelineParameter: Parameters facilitate setting and delivering data into the pipeline's execution environment. They are defined at create time, with optional defaults, and can be overridden at run time. If `localCopy` is unset, then the parameter specifies a string that is passed as-is into the pipeline, as the value of the environment variable with the given name. A default value can be optionally specified at create time. The default can be overridden at run time using the inputs map. If no default is given, a value must be supplied at runtime. If `localCopy` is defined, then the parameter specifies a data source or sink, both in Google Cloud Storage and on the Docker container where the pipeline computation is run. The service account associated with the Pipeline (by default the project's Compute Engine service account) must have access to the Google Cloud Storage paths. At run time, the Google Cloud Storage paths can be overridden if a default was provided at create time, or must be set otherwise. The pipeline runner should add a key/value pair to either the inputs or outputs map. The indicated data copies will be carried out before/after pipeline execution, just as if the corresponding arguments were provided to `gsutil cp`. For example: Given the following `PipelineParameter`, specified in the `inputParameters` list: ``` {name: "input_file", localCopy: {path: "file.txt", disk: "pd1"}} ``` where `disk` is defined in the `PipelineResources` object as: ``` {name: "pd1", mountPoint: "/mnt/disk/"} ``` We create a disk named `pd1`, mount it on the host VM, and map `/mnt/pd1` to `/mnt/disk` in the docker container. At runtime, an entry for `input_file` would be required in the inputs map, such as: ``` inputs["input_file"] = "gs://my-bucket/bar.txt" ``` This would generate the following gsutil call: ``` gsutil cp gs://my-bucket/bar.txt /mnt/pd1/file.txt ``` The file `/mnt/pd1/file.txt` maps to `/mnt/disk/file.txt` in the Docker container. Acceptable paths are: Google Cloud storage pathLocal path filefile globdirectory For outputs, the direction of the copy is reversed: ``` gsutil cp /mnt/disk/file.txt gs://my-bucket/bar.txt ``` Acceptable paths are: Local pathGoogle Cloud Storage path filefile file directory - directory must already exist glob directory - directory will be created if it doesn't exist One restriction due to docker limitations, is that for outputs that are found on the boot disk, the local path cannot be a glob and must be a file.

func (*PipelineParameter) MarshalJSON 

func (s *PipelineParameter) MarshalJSON() ([]byte, error)

type PipelineResources 

type PipelineResources struct {
	// BootDiskSizeGb: The size of the boot disk. Defaults to 10 (GB).
	BootDiskSizeGb int64 `json:"bootDiskSizeGb,omitempty"`

	// Disks: Disks to attach.
	Disks []*Disk `json:"disks,omitempty"`

	// MinimumCpuCores: The minimum number of cores to use. Defaults to 1.
	MinimumCpuCores int64 `json:"minimumCpuCores,omitempty"`

	// MinimumRamGb: The minimum amount of RAM to use. Defaults to 3.75 (GB)
	MinimumRamGb float64 `json:"minimumRamGb,omitempty"`

	// NoAddress: Whether to assign an external IP to the instance. This is
	// an experimental feature that may go away. Defaults to false.
	// Corresponds to `--no_address` flag for [gcloud compute instances
	// create]
	// (https://cloud.google.com/sdk/gcloud/reference/compute/instances/creat
	// e). In order to use this, must be true for both create time and run
	// time. Cannot be true at run time if false at create time. If you need
	// to ssh into a private IP VM for debugging, you can ssh to a public VM
	// and then ssh into the private VM's Internal IP. If noAddress is set,
	// this pipeline run may only load docker images from Google Container
	// Registry and not Docker Hub. ** Note: To use this option, your
	// project must be in Google Access for Private IPs Early Access
	// Program.**
	NoAddress bool `json:"noAddress,omitempty"`

	// Preemptible: Whether to use preemptible VMs. Defaults to `false`. In
	// order to use this, must be true for both create time and run time.
	// Cannot be true at run time if false at create time.
	Preemptible bool `json:"preemptible,omitempty"`

	// Zones: List of Google Compute Engine availability zones to which
	// resource creation will restricted. If empty, any zone may be chosen.
	Zones []string `json:"zones,omitempty"`

	// ForceSendFields is a list of field names (e.g. "BootDiskSizeGb") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "BootDiskSizeGb") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

PipelineResources: The system resources for the pipeline run.

func (*PipelineResources) MarshalJSON 

func (s *PipelineResources) MarshalJSON() ([]byte, error)

type PipelinesCreateCall 

type PipelinesCreateCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesCreateCall) Context 

func (c *PipelinesCreateCall) Context(ctx context.Context) *PipelinesCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesCreateCall) Do 

func (c *PipelinesCreateCall) Do(opts ...googleapi.CallOption) (*Pipeline, error)

Do executes the "genomics.pipelines.create" call. Exactly one of *Pipeline or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Pipeline.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesCreateCall) Fields 

func (c *PipelinesCreateCall) Fields(s ...googleapi.Field) *PipelinesCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

type PipelinesDeleteCall 

type PipelinesDeleteCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesDeleteCall) Context 

func (c *PipelinesDeleteCall) Context(ctx context.Context) *PipelinesDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesDeleteCall) Do 

func (c *PipelinesDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.pipelines.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesDeleteCall) Fields 

func (c *PipelinesDeleteCall) Fields(s ...googleapi.Field) *PipelinesDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

type PipelinesGetCall 

type PipelinesGetCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesGetCall) Context 

func (c *PipelinesGetCall) Context(ctx context.Context) *PipelinesGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesGetCall) Do 

func (c *PipelinesGetCall) Do(opts ...googleapi.CallOption) (*Pipeline, error)

Do executes the "genomics.pipelines.get" call. Exactly one of *Pipeline or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Pipeline.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesGetCall) Fields 

func (c *PipelinesGetCall) Fields(s ...googleapi.Field) *PipelinesGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesGetCall) IfNoneMatch 

func (c *PipelinesGetCall) IfNoneMatch(entityTag string) *PipelinesGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type PipelinesGetControllerConfigCall 

type PipelinesGetControllerConfigCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesGetControllerConfigCall) Context 

func (c *PipelinesGetControllerConfigCall) Context(ctx context.Context) *PipelinesGetControllerConfigCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesGetControllerConfigCall) Do 

func (c *PipelinesGetControllerConfigCall) Do(opts ...googleapi.CallOption) (*ControllerConfig, error)

Do executes the "genomics.pipelines.getControllerConfig" call. Exactly one of *ControllerConfig or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ControllerConfig.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesGetControllerConfigCall) Fields 

func (c *PipelinesGetControllerConfigCall) Fields(s ...googleapi.Field) *PipelinesGetControllerConfigCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesGetControllerConfigCall) IfNoneMatch 

func (c *PipelinesGetControllerConfigCall) IfNoneMatch(entityTag string) *PipelinesGetControllerConfigCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*PipelinesGetControllerConfigCall) OperationId 

func (c *PipelinesGetControllerConfigCall) OperationId(operationId string) *PipelinesGetControllerConfigCall

OperationId sets the optional parameter "operationId": The operation to retrieve controller configuration for.

func (*PipelinesGetControllerConfigCall) ValidationToken 

func (c *PipelinesGetControllerConfigCall) ValidationToken(validationToken uint64) *PipelinesGetControllerConfigCall

ValidationToken sets the optional parameter "validationToken":

type PipelinesListCall 

type PipelinesListCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesListCall) Context 

func (c *PipelinesListCall) Context(ctx context.Context) *PipelinesListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesListCall) Do 

func (c *PipelinesListCall) Do(opts ...googleapi.CallOption) (*ListPipelinesResponse, error)

Do executes the "genomics.pipelines.list" call. Exactly one of *ListPipelinesResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListPipelinesResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesListCall) Fields 

func (c *PipelinesListCall) Fields(s ...googleapi.Field) *PipelinesListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesListCall) IfNoneMatch 

func (c *PipelinesListCall) IfNoneMatch(entityTag string) *PipelinesListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*PipelinesListCall) NamePrefix 

func (c *PipelinesListCall) NamePrefix(namePrefix string) *PipelinesListCall

NamePrefix sets the optional parameter "namePrefix": Pipelines with names that match this prefix should be returned. If unspecified, all pipelines in the project, up to `pageSize`, will be returned.

func (*PipelinesListCall) PageSize 

func (c *PipelinesListCall) PageSize(pageSize int64) *PipelinesListCall

PageSize sets the optional parameter "pageSize": Number of pipelines to return at once. Defaults to 256, and max is 2048.

func (*PipelinesListCall) PageToken 

func (c *PipelinesListCall) PageToken(pageToken string) *PipelinesListCall

PageToken sets the optional parameter "pageToken": Token to use to indicate where to start getting results. If unspecified, returns the first page of results.

func (*PipelinesListCall) Pages 

func (c *PipelinesListCall) Pages(ctx context.Context, f func(*ListPipelinesResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

func (*PipelinesListCall) ProjectId 

func (c *PipelinesListCall) ProjectId(projectId string) *PipelinesListCall

ProjectId sets the optional parameter "projectId": Required. The name of the project to search for pipelines. Caller must have READ access to this project.

type PipelinesRunCall 

type PipelinesRunCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesRunCall) Context 

func (c *PipelinesRunCall) Context(ctx context.Context) *PipelinesRunCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesRunCall) Do 

func (c *PipelinesRunCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.pipelines.run" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesRunCall) Fields 

func (c *PipelinesRunCall) Fields(s ...googleapi.Field) *PipelinesRunCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

type PipelinesService 

type PipelinesService struct {
	// contains filtered or unexported fields
}

func NewPipelinesService 

func NewPipelinesService(s *Service) *PipelinesService

func (*PipelinesService) Create 

func (r *PipelinesService) Create(pipeline *Pipeline) *PipelinesCreateCall

Create: Creates a pipeline that can be run later. Create takes a Pipeline that has all fields other than `pipelineId` populated, and then returns the same pipeline with `pipelineId` populated. This id can be used to run the pipeline. Caller must have WRITE permission to the project.

func (*PipelinesService) Delete 

func (r *PipelinesService) Delete(pipelineId string) *PipelinesDeleteCall

Delete: Deletes a pipeline based on ID. Caller must have WRITE permission to the project.

func (*PipelinesService) Get 

func (r *PipelinesService) Get(pipelineId string) *PipelinesGetCall

Get: Retrieves a pipeline based on ID. Caller must have READ permission to the project.

func (*PipelinesService) GetControllerConfig 

func (r *PipelinesService) GetControllerConfig() *PipelinesGetControllerConfigCall

GetControllerConfig: Gets controller configuration information. Should only be called by VMs created by the Pipelines Service and not by end users.

func (*PipelinesService) List 

func (r *PipelinesService) List() *PipelinesListCall

List: Lists pipelines. Caller must have READ permission to the project.

func (*PipelinesService) Run 

func (r *PipelinesService) Run(runpipelinerequest *RunPipelineRequest) *PipelinesRunCall

Run: Runs a pipeline. If `pipelineId` is specified in the request, then run a saved pipeline. If `ephemeralPipeline` is specified, then run that pipeline once without saving a copy. The caller must have READ permission to the project where the pipeline is stored and WRITE permission to the project where the pipeline will be run, as VMs will be created and storage will be used.

func (*PipelinesService) SetOperationStatus 

func (r *PipelinesService) SetOperationStatus(setoperationstatusrequest *SetOperationStatusRequest) *PipelinesSetOperationStatusCall

SetOperationStatus: Sets status of a given operation. Any new timestamps (as determined by description) are appended to TimestampEvents. Should only be called by VMs created by the Pipelines Service and not by end users.

type PipelinesSetOperationStatusCall 

type PipelinesSetOperationStatusCall struct {
	// contains filtered or unexported fields
}

func (*PipelinesSetOperationStatusCall) Context 

func (c *PipelinesSetOperationStatusCall) Context(ctx context.Context) *PipelinesSetOperationStatusCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesSetOperationStatusCall) Do 

func (c *PipelinesSetOperationStatusCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.pipelines.setOperationStatus" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesSetOperationStatusCall) Fields 

func (c *PipelinesSetOperationStatusCall) Fields(s ...googleapi.Field) *PipelinesSetOperationStatusCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

type RepeatedString 

type RepeatedString struct {
	Values []string `json:"values,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Values") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Values") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

func (*RepeatedString) MarshalJSON 

func (s *RepeatedString) MarshalJSON() ([]byte, error)

type RunPipelineArgs 

type RunPipelineArgs struct {
	// ClientId: Client-specified pipeline operation identifier.
	ClientId string `json:"clientId,omitempty"`

	// Inputs: Pipeline input arguments; keys are defined in the pipeline
	// documentation. All input parameters that do not have default values
	// must be specified. If parameters with defaults are specified here,
	// the defaults will be overridden.
	Inputs map[string]string `json:"inputs,omitempty"`

	// KeepVmAliveOnFailureDuration: How long to keep the VM up after a
	// failure (for example docker command failed, copying input or output
	// files failed, etc). While the VM is up, one can ssh into the VM to
	// debug. Default is 0; maximum allowed value is 1 day.
	KeepVmAliveOnFailureDuration string `json:"keepVmAliveOnFailureDuration,omitempty"`

	// Logging: Required. Logging options. Used by the service to
	// communicate results to the user.
	Logging *LoggingOptions `json:"logging,omitempty"`

	// Outputs: Pipeline output arguments; keys are defined in the pipeline
	// documentation. All output parameters of without default values must
	// be specified. If parameters with defaults are specified here, the
	// defaults will be overridden.
	Outputs map[string]string `json:"outputs,omitempty"`

	// ProjectId: Required. The project in which to run the pipeline. The
	// caller must have WRITER access to all Google Cloud services and
	// resources (e.g. Google Compute Engine) will be used.
	ProjectId string `json:"projectId,omitempty"`

	// Resources: Specifies resource requirements/overrides for the pipeline
	// run.
	Resources *PipelineResources `json:"resources,omitempty"`

	// ServiceAccount: The Google Cloud Service Account that will be used to
	// access data and services. By default, the compute service account
	// associated with `projectId` is used.
	ServiceAccount *ServiceAccount `json:"serviceAccount,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ClientId") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ClientId") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

RunPipelineArgs: The pipeline run arguments.

func (*RunPipelineArgs) MarshalJSON 

func (s *RunPipelineArgs) MarshalJSON() ([]byte, error)

type RunPipelineRequest 

type RunPipelineRequest struct {
	// EphemeralPipeline: A new pipeline object to run once and then delete.
	EphemeralPipeline *Pipeline `json:"ephemeralPipeline,omitempty"`

	// PipelineArgs: The arguments to use when running this pipeline.
	PipelineArgs *RunPipelineArgs `json:"pipelineArgs,omitempty"`

	// PipelineId: The already created pipeline to run.
	PipelineId string `json:"pipelineId,omitempty"`

	// ForceSendFields is a list of field names (e.g. "EphemeralPipeline")
	// to unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "EphemeralPipeline") to
	// include in API requests with the JSON null value. By default, fields
	// with empty values are omitted from API requests. However, any field
	// with an empty value appearing in NullFields will be sent to the
	// server as null. It is an error if a field in this list has a
	// non-empty value. This may be used to include null fields in Patch
	// requests.
	NullFields []string `json:"-"`
}

RunPipelineRequest: The request to run a pipeline. If `pipelineId` is specified, it refers to a saved pipeline created with CreatePipeline and set as the `pipelineId` of the returned Pipeline object. If `ephemeralPipeline` is specified, that pipeline is run once with the given args and not saved. It is an error to specify both `pipelineId` and `ephemeralPipeline`. `pipelineArgs` must be specified.

func (*RunPipelineRequest) MarshalJSON 

func (s *RunPipelineRequest) MarshalJSON() ([]byte, error)

type RuntimeMetadata 

type RuntimeMetadata struct {
	// ComputeEngine: Execution information specific to Google Compute
	// Engine.
	ComputeEngine *ComputeEngine `json:"computeEngine,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ComputeEngine") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ComputeEngine") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

RuntimeMetadata: Runtime metadata that will be populated in the runtimeMetadata field of the Operation associated with a RunPipeline execution.

func (*RuntimeMetadata) MarshalJSON 

func (s *RuntimeMetadata) MarshalJSON() ([]byte, error)

type Service 

type Service struct {
	BasePath  string // API endpoint base URL
	UserAgent string // optional additional User-Agent fragment

	Operations *OperationsService

	Pipelines *PipelinesService
	// contains filtered or unexported fields
}

func New 

func New(client *http.Client) (*Service, error)

type ServiceAccount 

type ServiceAccount struct {
	// Email: Email address of the service account. Defaults to `default`,
	// which uses the compute service account associated with the project.
	Email string `json:"email,omitempty"`

	// Scopes: List of scopes to be enabled for this service account on the
	// VM. The following scopes are automatically included: *
	// https://www.googleapis.com/auth/compute *
	// https://www.googleapis.com/auth/devstorage.full_control *
	// https://www.googleapis.com/auth/genomics *
	// https://www.googleapis.com/auth/logging.write *
	// https://www.googleapis.com/auth/monitoring.write
	Scopes []string `json:"scopes,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Email") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Email") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

ServiceAccount: A Google Cloud Service Account.

func (*ServiceAccount) MarshalJSON 

func (s *ServiceAccount) MarshalJSON() ([]byte, error)

type SetOperationStatusRequest 

type SetOperationStatusRequest struct {
	// Possible values:
	//   "OK"
	//   "CANCELLED"
	//   "UNKNOWN"
	//   "INVALID_ARGUMENT"
	//   "DEADLINE_EXCEEDED"
	//   "NOT_FOUND"
	//   "ALREADY_EXISTS"
	//   "PERMISSION_DENIED"
	//   "UNAUTHENTICATED"
	//   "RESOURCE_EXHAUSTED"
	//   "FAILED_PRECONDITION"
	//   "ABORTED"
	//   "OUT_OF_RANGE"
	//   "UNIMPLEMENTED"
	//   "INTERNAL"
	//   "UNAVAILABLE"
	//   "DATA_LOSS"
	ErrorCode string `json:"errorCode,omitempty"`

	ErrorMessage string `json:"errorMessage,omitempty"`

	OperationId string `json:"operationId,omitempty"`

	TimestampEvents []*TimestampEvent `json:"timestampEvents,omitempty"`

	ValidationToken uint64 `json:"validationToken,omitempty,string"`

	// ForceSendFields is a list of field names (e.g. "ErrorCode") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "ErrorCode") to include in
	// API requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

SetOperationStatusRequest: Request to set operation status. Should only be used by VMs created by the Pipelines Service and not by end users.

func (*SetOperationStatusRequest) MarshalJSON 

func (s *SetOperationStatusRequest) MarshalJSON() ([]byte, error)

type Status 

type Status struct {
	// Code: The status code, which should be an enum value of
	// google.rpc.Code.
	Code int64 `json:"code,omitempty"`

	// Details: A list of messages that carry the error details. There will
	// be a common set of message types for APIs to use.
	Details []StatusDetails `json:"details,omitempty"`

	// Message: A developer-facing error message, which should be in
	// English. Any user-facing error message should be localized and sent
	// in the google.rpc.Status.details field, or localized by the client.
	Message string `json:"message,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Code") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Code") to include in API
	// requests with the JSON null value. By default, fields with empty
	// values are omitted from API requests. However, any field with an
	// empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

Status: The `Status` type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by [gRPC](https://github.com/grpc). The error model is designed to be: - Simple to use and understand for most users - Flexible enough to meet unexpected needs # Overview The `Status` message contains three pieces of data: error code, error message, and error details. The error code should be an enum value of google.rpc.Code, but it may accept additional error codes if needed. The error message should be a developer-facing English message that helps developers *understand* and *resolve* the error. If a localized user-facing error message is needed, put the localized message in the error details or localize it in the client. The optional error details may contain arbitrary information about the error. There is a predefined set of error detail types in the package `google.rpc` which can be used for common error conditions. # Language mapping The `Status` message is the logical representation of the error model, but it is not necessarily the actual wire format. When the `Status` message is exposed in different client libraries and different wire protocols, it can be mapped differently. For example, it will likely be mapped to some exceptions in Java, but more likely mapped to some error codes in C. # Other uses The error model and the `Status` message can be used in a variety of environments, either with or without APIs, to provide a consistent developer experience across different environments. Example uses of this error model include: - Partial errors. If a service needs to return partial errors to the client, it may embed the `Status` in the normal response to indicate the partial errors. - Workflow errors. A typical workflow has multiple steps. Each step may have a `Status` message for error reporting purpose. - Batch operations. If a client uses batch request and batch response, the `Status` message should be used directly inside batch response, one for each error sub-response. - Asynchronous operations. If an API call embeds asynchronous operation results in its response, the status of those operations should be represented directly using the `Status` message. - Logging. If some API errors are stored in logs, the message `Status` could be used directly after any stripping needed for security/privacy reasons.

func (*Status) MarshalJSON 

func (s *Status) MarshalJSON() ([]byte, error)

type StatusDetails 

type StatusDetails interface{}

type TimestampEvent 

type TimestampEvent struct {
	// Description: String indicating the type of event
	Description string `json:"description,omitempty"`

	// Timestamp: The time this event occured.
	Timestamp string `json:"timestamp,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Description") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`

	// NullFields is a list of field names (e.g. "Description") to include
	// in API requests with the JSON null value. By default, fields with
	// empty values are omitted from API requests. However, any field with
	// an empty value appearing in NullFields will be sent to the server as
	// null. It is an error if a field in this list has a non-empty value.
	// This may be used to include null fields in Patch requests.
	NullFields []string `json:"-"`
}

TimestampEvent: Stores the list of events and times they occured for major events in job execution.

func (*TimestampEvent) MarshalJSON 

func (s *TimestampEvent) MarshalJSON() ([]byte, error)

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