chrpos

Documentation

Index

• type TabixLocus
  • func ChunkChrRange(chunksize int, assembly string, chromosome string, startPos, endPos int) ([]TabixLocus, error)
  • func MakeTabixLocus(chrom string, start, end int) TabixLocus
  • func TabixLociFromPath(filepath string) ([]TabixLocus, error)
  • func (tl TabixLocus) Chrom() string
  • func (tl TabixLocus) End() uint32
  • func (tl TabixLocus) Start() uint32

Types

type TabixLocus

type TabixLocus struct {
	// contains filtered or unexported fields
}

func ChunkChrRange

func ChunkChrRange(chunksize int, assembly string, chromosome string, startPos, endPos int) ([]TabixLocus, error)

ChunkChrRange allows you to split genomic data into chunks of size chunksize. Valid values for assemply are grch37 and grch38. chromosome is optional; if set, will only process that chromosome. startPos and endPos are optional and require chromosome to be set. If nonzero, chunks will only be created within their limits.

func MakeTabixLocus

func MakeTabixLocus(chrom string, start, end int) TabixLocus

func TabixLociFromPath

func TabixLociFromPath(filepath string) ([]TabixLocus, error)

func (TabixLocus) Chrom

func (tl TabixLocus) Chrom() string

func (TabixLocus) End

func (tl TabixLocus) End() uint32

func (TabixLocus) Start

func (tl TabixLocus) Start() uint32