shared

Documentation

Index

• Constants
• func Contains(haystack []string, needle string) bool
• func HasProg(p string) string
• func NewReader(path string, rd int, fasta string, args ...string) (*bam.Reader, error)
• type Logger
  • func (l *Logger) Write(b []byte) (int, error)

Constants

const Prefix = "[smoove]"

Functions

func Contains

func Contains(haystack []string, needle string) bool

func HasProg

func HasProg(p string) string

func NewReader

func NewReader(path string, rd int, fasta string, args ...string) (*bam.Reader, error)

NewReader returns a bam.Reader from any path that samtools can read.

Types

type Logger

type Logger struct {
	*log.Logger
}

var Slogger *Logger

func (*Logger) Write

func (l *Logger) Write(b []byte) (int, error)