README
¶
#HTS
##Installation
$ go get github.com/biogo/hts/...
##Overview
SAM and BAM handling for the Go language.
Citing
If you use bíogo, please cite Kortschak and Adelson "bíogo: a simple high-performance bioinformatics toolkit for the Go language", doi:10.1101/005033.
##Library Structure and Coding Style
The coding style should be aligned with normal Go idioms as represented in the Go core libraries.
##Copyright and License
Copyright ©2011-2013 The bíogo Authors except where otherwise noted. All rights reserved. Use of this source code is governed by a BSD-style license that can be found in the LICENSE file.
The bíogo logo is derived from Bitstream Charter, Copyright ©1989-1992 Bitstream Inc., Cambridge, MA.
BITSTREAM CHARTER is a registered trademark of Bitstream Inc.
Directories
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| Path | Synopsis |
|---|---|
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Package bam implements BAM file format reading, writing and indexing.
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Package bam implements BAM file format reading, writing and indexing. |
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Package bgzf implements BGZF format reading and writing according to the SAM specification.
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Package bgzf implements BGZF format reading and writing according to the SAM specification. |
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cache
Package cache provides basic block cache types for the bgzf package.
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Package cache provides basic block cache types for the bgzf package. |
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index
Package index provides common code for CSI and tabix BGZF indexing.
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Package index provides common code for CSI and tabix BGZF indexing. |
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Package csi implements CSIv1 and CSIv2 coordinate sorted indexing.
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Package csi implements CSIv1 and CSIv2 coordinate sorted indexing. |
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Package internal provides shared code for BAI and tabix index implementations.
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Package internal provides shared code for BAI and tabix index implementations. |
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Package sam implements SAM file format reading and writing.
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Package sam implements SAM file format reading and writing. |
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Package tabix implements tabix coordinate sorted indexing.
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Package tabix implements tabix coordinate sorted indexing. |
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