codon

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Overview

Package codon contains 31 DNA to Protein translation tables. See https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi for details.

Index

Constants

This section is empty.

Variables

This section is empty.

Functions

This section is empty.

Types

type AltFlatwormMt 

type AltFlatwormMt struct{}

AltFlatwormMt is the NCBI mtDNA to protein translation table for flatworm

func (AltFlatwormMt) AltName 

func (s AltFlatwormMt) AltName() string

AltName provides the alternative name used by NCBI

func (AltFlatwormMt) ID 

func (s AltFlatwormMt) ID() uint

ID provides the alternative identifier used by NCBI

func (AltFlatwormMt) StartCodons 

func (s AltFlatwormMt) StartCodons() []string

StartCodons lists the codons which start a transcript

func (AltFlatwormMt) StopCodons 

func (s AltFlatwormMt) StopCodons() []string

StopCodons lists the codons which end a transcript

func (AltFlatwormMt) String 

func (s AltFlatwormMt) String() string

String provides a human-readable indication of usage

func (AltFlatwormMt) Translate 

func (s AltFlatwormMt) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type AltNamer 

type AltNamer interface {
	AltName() string
}

AltNamer provides the alternative name for a codon translation table Zero value ("") indicates no alternative name.

type AltYeast 

type AltYeast struct{}

AltYeast is the alternative yeast DNA to protein translation table

func (AltYeast) AltName 

func (s AltYeast) AltName() string

AltName provides the alternative name used by NCBI

func (AltYeast) ID 

func (s AltYeast) ID() uint

ID provides the alternative identifier used by NCBI

func (AltYeast) StartCodons 

func (s AltYeast) StartCodons() []string

StartCodons lists the codons which start a transcript

func (AltYeast) StopCodons 

func (s AltYeast) StopCodons() []string

StopCodons lists the codons which end a transcript

func (AltYeast) String 

func (s AltYeast) String() string

String provides a human-readable indication of usage

func (AltYeast) Translate 

func (s AltYeast) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type ArchaelPlastid 

type ArchaelPlastid struct {
	BacterialArchaelPlantPlastid
}

ArchaelPlastid is the archael plastid DNA to protein translation table

func (ArchaelPlastid) String 

func (s ArchaelPlastid) String() string

String provides a human-readable indication of usage

type AscidianMt 

type AscidianMt struct{}

AscidianMt is the ascidian mtDNA to protein translation table

func (AscidianMt) AltName 

func (s AscidianMt) AltName() string

AltName provides the alternative name used by NCBI

func (AscidianMt) ID 

func (s AscidianMt) ID() uint

ID provides the alternative identifier used by NCBI

func (AscidianMt) StartCodons 

func (s AscidianMt) StartCodons() []string

StartCodons lists the codons which start a transcript

func (AscidianMt) StopCodons 

func (s AscidianMt) StopCodons() []string

StopCodons lists the codons which end a transcript

func (AscidianMt) String 

func (s AscidianMt) String() string

String provides a human-readable indication of usage

func (AscidianMt) Translate 

func (s AscidianMt) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type BacterialArchaelPlantPlastid 

type BacterialArchaelPlantPlastid struct{}

BacterialArchaelPlantPlastid is the NCBI DNA to protein translation table for bacterial, archael, and plant plastid

func (BacterialArchaelPlantPlastid) AltName 

func (s BacterialArchaelPlantPlastid) AltName() string

AltName provides the alternative name used by NCBI

func (BacterialArchaelPlantPlastid) ID 

func (s BacterialArchaelPlantPlastid) ID() uint

ID provides the alternative identifier used by NCBI

func (BacterialArchaelPlantPlastid) StartCodons 

func (s BacterialArchaelPlantPlastid) StartCodons() []string

StartCodons lists the codons which start a transcript

func (BacterialArchaelPlantPlastid) StopCodons 

func (s BacterialArchaelPlantPlastid) StopCodons() []string

StopCodons lists the codons which end a transcript

func (BacterialArchaelPlantPlastid) String 

func (s BacterialArchaelPlantPlastid) String() string

String provides a human-readable indication of usage

func (BacterialArchaelPlantPlastid) Translate 

func (s BacterialArchaelPlantPlastid) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type BacterialPlastid 

type BacterialPlastid struct {
	BacterialArchaelPlantPlastid
}

BacterialPlastid is the bacterial plastid DNA to protein translation table

func (BacterialPlastid) String 

func (s BacterialPlastid) String() string

String provides a human-readable indication of usage

type Blastocrithidia 

type Blastocrithidia struct{}

Blastocrithidia is the blastocrithidia DNA to protein translation table

func (Blastocrithidia) AltName 

func (s Blastocrithidia) AltName() string

AltName provides the alternative name used by NCBI

func (Blastocrithidia) ID 

func (s Blastocrithidia) ID() uint

ID provides the alternative identifier used by NCBI

func (Blastocrithidia) StartCodons 

func (s Blastocrithidia) StartCodons() []string

StartCodons lists the codons which start a transcript

func (Blastocrithidia) StopCodons 

func (s Blastocrithidia) StopCodons() []string

StopCodons lists the codons which end a transcript

func (Blastocrithidia) String 

func (s Blastocrithidia) String() string

String provides a human-readable indication of usage

func (Blastocrithidia) Translate 

func (s Blastocrithidia) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type BlepharismaMacronuclear 

type BlepharismaMacronuclear struct{}

BlepharismaMacronuclear is the DNA to protein translation table

func (BlepharismaMacronuclear) AltName 

func (s BlepharismaMacronuclear) AltName() string

AltName provides the alternative name used by NCBI

func (BlepharismaMacronuclear) ID 

func (s BlepharismaMacronuclear) ID() uint

ID provides the alternative identifier used by NCBI

func (BlepharismaMacronuclear) StartCodons 

func (s BlepharismaMacronuclear) StartCodons() []string

StartCodons lists the codons which start a transcript

func (BlepharismaMacronuclear) StopCodons 

func (s BlepharismaMacronuclear) StopCodons() []string

StopCodons lists the codons which end a transcript

func (BlepharismaMacronuclear) String 

func (s BlepharismaMacronuclear) String() string

String provides a human-readable indication of usage

func (BlepharismaMacronuclear) Translate 

func (s BlepharismaMacronuclear) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type CandidateDivisionSR1 

type CandidateDivisionSR1 struct {
	Gracilibacteria
}

CandidateDivisionSR1 is the mtDNA to protein translation table for Candidate Division SR1

func (CandidateDivisionSR1) String 

func (s CandidateDivisionSR1) String() string

String provides a human-readable indication of usag

type ChlorophyceanMt 

type ChlorophyceanMt struct{}

ChlorophyceanMt is the chlorophycean mtDNA to protein translation table

func (ChlorophyceanMt) AltName 

func (s ChlorophyceanMt) AltName() string

AltName provides the alternative name used by NCBI

func (ChlorophyceanMt) ID 

func (s ChlorophyceanMt) ID() uint

ID provides the alternative identifier used by NCBI

func (ChlorophyceanMt) StartCodons 

func (s ChlorophyceanMt) StartCodons() []string

StartCodons lists the codons which start a transcrip

func (ChlorophyceanMt) StopCodons 

func (s ChlorophyceanMt) StopCodons() []string

StopCodons lists the codons which end a transcrip

func (ChlorophyceanMt) String 

func (s ChlorophyceanMt) String() string

String provides a human-readable indication of usage

func (ChlorophyceanMt) Translate 

func (s ChlorophyceanMt) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalen

type Ciliate 

type Ciliate struct {
	SGC5
}

Ciliate is the DNA to protein translation table

func (Ciliate) String 

func (s Ciliate) String() string

String provides a human-readable indication of usag

type CoelenterateMt 

type CoelenterateMt struct {
	SGC3
}

CoelenterateMt is the coelenterate mtDNA to protein translation table

func (CoelenterateMt) String 

func (s CoelenterateMt) String() string

String provides a human-readable indication of usage

type Condylostoma 

type Condylostoma struct{}

Condylostoma is the condylostoma DNA to protein translation table

func (Condylostoma) AltName 

func (s Condylostoma) AltName() string

AltName provides the alternative name used by NCB

func (Condylostoma) ID 

func (s Condylostoma) ID() uint

ID provides the alternative identifier used by NCBI

func (Condylostoma) StartCodons 

func (s Condylostoma) StartCodons() []string

StartCodons lists the codons which start a transcript

func (Condylostoma) StopCodons 

func (s Condylostoma) StopCodons() []string

StopCodons lists the codons which end a transcript

func (Condylostoma) String 

func (s Condylostoma) String() string

String provides a human-readable indication of usage

func (Condylostoma) Translate 

func (s Condylostoma) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type Dasycladacean 

type Dasycladacean struct {
	SGC5
}

Dasycladacean is the DNA to protein translation table

func (Dasycladacean) String 

func (s Dasycladacean) String() string

String provides a human-readable indication of usag

type EchinodermMt 

type EchinodermMt struct {
	SGC8
}

EchinodermMt is the echinoderm mtDNA to protein translation table

func (EchinodermMt) String 

func (s EchinodermMt) String() string

String provides a human-readable indication of usage

type Euplotid 

type Euplotid struct {
	SGC9
}

Euplotid is the euplotid DNA to protein translation table

func (Euplotid) String 

func (s Euplotid) String() string

String provides a human-readable indication of usage

type FlatwormMt 

type FlatwormMt struct {
	SGC8
}

FlatwormMt is the flatworm mtDNA to protein translation table

func (FlatwormMt) String 

func (s FlatwormMt) String() string

String provides a human-readable indication of usage

type Gracilibacteria 

type Gracilibacteria struct{}

Gracilibacteria is the NCBI DNA to protein translation table for gracilibacteria

func (Gracilibacteria) AltName 

func (s Gracilibacteria) AltName() string

AltName provides the alternative name used by NCBI

func (Gracilibacteria) ID 

func (s Gracilibacteria) ID() uint

ID provides the alternative identifier used by NCBI

func (Gracilibacteria) StartCodons 

func (s Gracilibacteria) StartCodons() []string

StartCodons lists the codons which start a transcript

func (Gracilibacteria) StopCodons 

func (s Gracilibacteria) StopCodons() []string

StopCodons lists the codons which end a transcript

func (Gracilibacteria) String 

func (s Gracilibacteria) String() string

String provides a human-readable indication of usag

func (Gracilibacteria) Translate 

func (s Gracilibacteria) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type Hexamita 

type Hexamita struct {
	SGC5
}

Hexamita is the DNA to protein translation table

func (Hexamita) String 

func (s Hexamita) String() string

String provides a human-readable indication of usag

type IDer 

type IDer interface {
	ID() uint
}

IDer provides the ID code used by NCBI

type Interface 

type Interface interface {
	Translater
	AltNamer
	IDer
	StartCodoner
	StopCodoner
}

Interface is a full featured codon lookup table

type InvertebrateMt 

type InvertebrateMt struct {
	SGC4
}

InvertebrateMt is the invertebrate mtDNA to protein translation table

func (InvertebrateMt) String 

func (s InvertebrateMt) String() string

String provides a human-readable indication of usage

type Karyorelict 

type Karyorelict struct{}

Karyorelict is the karyorelict DNA to protein translation table

func (Karyorelict) AltName 

func (s Karyorelict) AltName() string

AltName provides the alternative name used by NCB

func (Karyorelict) ID 

func (s Karyorelict) ID() uint

ID provides the alternative identifier used by NCBI

func (Karyorelict) StartCodons 

func (s Karyorelict) StartCodons() []string

StartCodons lists the codons which start a transcript

func (Karyorelict) StopCodons 

func (s Karyorelict) StopCodons() []string

StopCodons lists the codons which end a transcript

func (Karyorelict) String 

func (s Karyorelict) String() string

String provides a human-readable indication of usage

func (Karyorelict) Translate 

func (s Karyorelict) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type Mesodinium 

type Mesodinium struct{}

Mesodinium is the mesodinium DNA to protein translation table

func (Mesodinium) AltName 

func (s Mesodinium) AltName() string

AltName provides the alternative name used by NCBI

func (Mesodinium) ID 

func (s Mesodinium) ID() uint

ID provides the alternative identifier used by NCBI

func (Mesodinium) StartCodons 

func (s Mesodinium) StartCodons() []string

StartCodons lists the codons which start a transcript

func (Mesodinium) StopCodons 

func (s Mesodinium) StopCodons() []string

StopCodons lists the codons which end a transcript

func (Mesodinium) String 

func (s Mesodinium) String() string

String provides a human-readable indication of usage

func (Mesodinium) Translate 

func (s Mesodinium) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type MoldMt 

type MoldMt struct {
	SGC3
}

MoldMt is the mold mtDNA to protein translation table

func (MoldMt) String 

func (s MoldMt) String() string

String provides a human-readable indication of usage

type Mycoplasma 

type Mycoplasma struct {
	SGC3
}

Mycoplasma is the mycoplasma DNA to protein translation table

func (Mycoplasma) String 

func (s Mycoplasma) String() string

String provides a human-readable indication of usage

type PachysolenTannophilus 

type PachysolenTannophilus struct{}

PachysolenTannophilus is the NCBI DNA to protein translation table for Pachysolen tannophilus

func (PachysolenTannophilus) AltName 

func (s PachysolenTannophilus) AltName() string

AltName provides the alternative name used by NCBI

func (PachysolenTannophilus) ID 

func (s PachysolenTannophilus) ID() uint

ID provides the alternative identifier used by NCBI

func (PachysolenTannophilus) StartCodons 

func (s PachysolenTannophilus) StartCodons() []string

StartCodons lists the codons which start a transcript

func (PachysolenTannophilus) StopCodons 

func (s PachysolenTannophilus) StopCodons() []string

StopCodons lists the codons which end a transcript

func (PachysolenTannophilus) String 

func (s PachysolenTannophilus) String() string

String provides a human-readable indication of usage

func (PachysolenTannophilus) Translate 

func (s PachysolenTannophilus) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type Peritrich 

type Peritrich struct{}

Peritrich is the peritrich DNA to protein translation table

func (Peritrich) AltName 

func (s Peritrich) AltName() string

AltName provides the alternative name used by NCBI

func (Peritrich) ID 

func (s Peritrich) ID() uint

ID provides the alternative identifier used by NCBI

func (Peritrich) StartCodons 

func (s Peritrich) StartCodons() []string

StartCodons lists the codons which start a transcript

func (Peritrich) StopCodons 

func (s Peritrich) StopCodons() []string

StopCodons lists the codons which end a transcript

func (Peritrich) String 

func (s Peritrich) String() string

String provides a human-readable indication of usage

func (Peritrich) Translate 

func (s Peritrich) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type PlantPlastid 

type PlantPlastid struct {
	BacterialArchaelPlantPlastid
}

PlantPlastid is the plant plastid DNA to protein translation table

func (PlantPlastid) String 

func (s PlantPlastid) String() string

String provides a human-readable indication of usage

type ProtozoanMt 

type ProtozoanMt struct {
	SGC3
}

ProtozoanMt is the protozoan mtDNA to protein translation table

func (ProtozoanMt) String 

func (s ProtozoanMt) String() string

String provides a human-readable indication of usage

type PterobranchiaMt 

type PterobranchiaMt struct{}

PterobranchiaMt is the pterobranchia mtDNA to protein translation tabl

func (PterobranchiaMt) AltName 

func (s PterobranchiaMt) AltName() string

AltName provides the alternative name used by NCBI

func (PterobranchiaMt) ID 

func (s PterobranchiaMt) ID() uint

ID provides the alternative identifier used by NCBI

func (PterobranchiaMt) StartCodons 

func (s PterobranchiaMt) StartCodons() []string

StartCodons lists the codons which start a transcript

func (PterobranchiaMt) StopCodons 

func (s PterobranchiaMt) StopCodons() []string

StopCodons lists the codons which end a transcript

func (PterobranchiaMt) String 

func (s PterobranchiaMt) String() string

String provides a human-readable indication of usag

func (PterobranchiaMt) Translate 

func (s PterobranchiaMt) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC0 

type SGC0 struct{}

SGC0 is the NCBI DNA to Protein translation table

func (SGC0) AltName 

func (s SGC0) AltName() string

AltName provides the alternative name used by NCBI

func (SGC0) ID 

func (s SGC0) ID() uint

ID provides the identifier used by NCBI

func (SGC0) StartCodons 

func (s SGC0) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC0) StopCodons 

func (s SGC0) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC0) String 

func (s SGC0) String() string

String provides a human-readable indication of usage

func (SGC0) Translate 

func (s SGC0) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC1 

type SGC1 struct{}

SGC1 is the NCBI mtDNA to protein translation table

func (SGC1) AltName 

func (s SGC1) AltName() string

AltName provides the alternative name used by NCBI

func (SGC1) ID 

func (s SGC1) ID() uint

ID provides the alternative identifier used by NCBI

func (SGC1) StartCodons 

func (s SGC1) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC1) StopCodons 

func (s SGC1) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC1) String 

func (s SGC1) String() string

String provides a human-readable indication of usage

func (SGC1) Translate 

func (s SGC1) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC2 

type SGC2 struct{}

SGC2 is the NCBI yeast mtDNA to protein translation table

func (SGC2) AltName 

func (s SGC2) AltName() string

AltName provides the alternative name used by NCBI

func (SGC2) ID 

func (s SGC2) ID() uint

ID provides the alternative identifier used by NCBI

func (SGC2) StartCodons 

func (s SGC2) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC2) StopCodons 

func (s SGC2) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC2) String 

func (s SGC2) String() string

String provides a human-readable indication of usage

func (SGC2) Translate 

func (s SGC2) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC3 

type SGC3 struct{}

SGC3 is the NCBI mtDNA to protein translation table for Mold, Protozoan, and Coelenterate As well as the standard code for Mycoplasma/Spiroplasma

func (SGC3) AltName 

func (s SGC3) AltName() string

AltName provides the alternative name used by NCBI

func (SGC3) ID 

func (s SGC3) ID() uint

ID provides the alternative identifier used by NCBI

func (SGC3) StartCodons 

func (s SGC3) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC3) StopCodons 

func (s SGC3) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC3) String 

func (s SGC3) String() string

String provides a human-readable indication of usage

func (SGC3) Translate 

func (s SGC3) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC4 

type SGC4 struct{}

SGC4 is the NCBI invertebrate mtDNA to protein translation table

func (SGC4) AltName 

func (s SGC4) AltName() string

AltName provides the alternative name used by NCB

func (SGC4) ID 

func (s SGC4) ID() uint

ID provides the alternative identifier used by NCBI

func (SGC4) StartCodons 

func (s SGC4) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC4) StopCodons 

func (s SGC4) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC4) String 

func (s SGC4) String() string

String provides a human-readable indication of usage

func (SGC4) Translate 

func (s SGC4) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC5 

type SGC5 struct{}

SGC5 is the NCBI DNA to protein translation table for Ciliate, Dasycladacean, and Hexamita

func (SGC5) AltName 

func (s SGC5) AltName() string

AltName provides the alternative name used by NCBI

func (SGC5) ID 

func (s SGC5) ID() uint

ID provides the alternative identifier used by NCBI

func (SGC5) StartCodons 

func (s SGC5) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC5) StopCodons 

func (s SGC5) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC5) String 

func (s SGC5) String() string

String provides a human-readable indication of usag

func (SGC5) Translate 

func (s SGC5) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC8 

type SGC8 struct{}

SGC8 is the NCBI mtDNA to protein translation table for Echinoderm and Flatworm

func (SGC8) AltName 

func (s SGC8) AltName() string

AltName provides the alternative name used by NCBI

func (SGC8) ID 

func (s SGC8) ID() uint

ID provides the alternative identifier used by NCBI

func (SGC8) StartCodons 

func (s SGC8) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC8) StopCodons 

func (s SGC8) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC8) String 

func (s SGC8) String() string

String provides a human-readable indication of usage

func (SGC8) Translate 

func (s SGC8) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type SGC9 

type SGC9 struct{}

SGC9 is the NCBI mtDNA to protein translation table for Echinoderm and Flatworm

func (SGC9) AltName 

func (s SGC9) AltName() string

AltName provides the alternative name used by NCBI

func (SGC9) ID 

func (s SGC9) ID() uint

ID provides the alternative identifier used by NCBI

func (SGC9) StartCodons 

func (s SGC9) StartCodons() []string

StartCodons lists the codons which start a transcript

func (SGC9) StopCodons 

func (s SGC9) StopCodons() []string

StopCodons lists the codons which end a transcript

func (SGC9) String 

func (s SGC9) String() string

String provides a human-readable indication of usage

func (SGC9) Translate 

func (s SGC9) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type ScenedesmusObliquusMt 

type ScenedesmusObliquusMt struct{}

ScenedesmusObliquusMt is the Scenedesmus obliquus mtDNA to protein translation tabl

func (ScenedesmusObliquusMt) AltName 

func (s ScenedesmusObliquusMt) AltName() string

AltName provides the alternative name used by NCBI

func (ScenedesmusObliquusMt) ID 

func (s ScenedesmusObliquusMt) ID() uint

ID provides the alternative identifier used by NCBI

func (ScenedesmusObliquusMt) StartCodons 

func (s ScenedesmusObliquusMt) StartCodons() []string

StartCodons lists the codons which start a transcript

func (ScenedesmusObliquusMt) StopCodons 

func (s ScenedesmusObliquusMt) StopCodons() []string

StopCodons lists the codons which end a transcript

func (ScenedesmusObliquusMt) String 

func (s ScenedesmusObliquusMt) String() string

String provides a human-readable indication of usage

func (ScenedesmusObliquusMt) Translate 

func (s ScenedesmusObliquusMt) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type Spiroplasma 

type Spiroplasma struct {
	SGC3
}

Spiroplasma is the spiroplasma DNA to protein translation table

func (Spiroplasma) String 

func (s Spiroplasma) String() string

String provides a human-readable indication of usage

type Standard 

type Standard struct {
	SGC0
}

Standard is the standard DNA to Protein translation table

func (Standard) String 

func (s Standard) String() string

String provides a human-readable indication of usage

type StartCodoner 

type StartCodoner interface {
	StartCodons() []string
}

StartCodoner lists the codons which start a transcript

type StopCodoner 

type StopCodoner interface {
	StopCodons() []string
}

StopCodoner lists the codons which end a transcript

type ThraustochytriumMt 

type ThraustochytriumMt struct{}

ThraustochytriumMt is the thraustochytrium mtDNA to protein translation table

func (ThraustochytriumMt) AltName 

func (s ThraustochytriumMt) AltName() string

AltName provides the alternative name used by NCBI

func (ThraustochytriumMt) ID 

func (s ThraustochytriumMt) ID() uint

ID provides the alternative identifier used by NCBI

func (ThraustochytriumMt) StartCodons 

func (s ThraustochytriumMt) StartCodons() []string

StartCodons lists the codons which start a transcript

func (ThraustochytriumMt) StopCodons 

func (s ThraustochytriumMt) StopCodons() []string

StopCodons lists the codons which end a transcript

func (ThraustochytriumMt) String 

func (s ThraustochytriumMt) String() string

String provides a human-readable indication of usage

func (ThraustochytriumMt) Translate 

func (s ThraustochytriumMt) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type Translater 

type Translater interface {
	Translate(string) (byte, bool)
}

Translater converts a codon into its amino acid equivalent

type TrematodeMt 

type TrematodeMt struct{}

TrematodeMt is the trematode mtDNA to protein translation table

func (TrematodeMt) AltName 

func (s TrematodeMt) AltName() string

AltName provides the alternative name used by NCB

func (TrematodeMt) ID 

func (s TrematodeMt) ID() uint

ID provides the alternative identifier used by NCBI

func (TrematodeMt) StartCodons 

func (s TrematodeMt) StartCodons() []string

StartCodons lists the codons which start a transcript

func (TrematodeMt) StopCodons 

func (s TrematodeMt) StopCodons() []string

StopCodons lists the codons which end a transcript

func (TrematodeMt) String 

func (s TrematodeMt) String() string

String provides a human-readable indication of usage

func (TrematodeMt) Translate 

func (s TrematodeMt) Translate(c string) (byte, bool)

Translate converts a codon into its amino acid equivalent

type VertebrateMt 

type VertebrateMt struct {
	SGC1
}

VertebrateMt is the mtDNA to protein translation table

func (VertebrateMt) String 

func (s VertebrateMt) String() string

String provides a human-readable indication of usage

type YeastMt 

type YeastMt struct {
	SGC2
}

YeastMt is the yeast mtDNA to protein translation table

func (YeastMt) String 

func (s YeastMt) String() string

String provides a human-readable indication of usage

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