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Documentation

Index

• Constants
• func Format(format string) int
• func StrFormat(format int) string
• type ImageDownloader
• type ItolImageDownloader
  • func NewItolImageDownloader(config map[string]string) *ItolImageDownloader
  • func (d *ItolImageDownloader) Download(id string, format int) ([]byte, error)
• type NcbiTreeDownloader
  • func NewNcbiTreeDownloader() *NcbiTreeDownloader
  • func (d *NcbiTreeDownloader) Download(id string) (*tree.Tree, error)
  • func (d *NcbiTreeDownloader) SetInternalNodesTaxId(val bool)
  • func (d *NcbiTreeDownloader) SetMapFileOutputPath(output string)
  • func (d *NcbiTreeDownloader) SetTipsTaxId(val bool)
• type TreeDownloader

Constants

const (
	IMGFORMAT_SVG = iota
	IMGFORMAT_PNG
	IMGFORMAT_EPS
	IMGFORMAT_PDF
	TXTFORMAT_NEWICK
	TXTFORMAT_NEXUS
	TXTFORMAT_PHYLOXML
	FORMAT_UNKNOWN
)

Functions

func Format

func Format(format string) int

func StrFormat

func StrFormat(format int) string

Types

type ImageDownloader

type ImageDownloader interface {
	Download(id string, format int) ([]byte, error) // Downdload a tree image from a server
}

type ItolImageDownloader

type ItolImageDownloader struct {
	// contains filtered or unexported fields
}

func NewItolImageDownloader

func NewItolImageDownloader(config map[string]string) *ItolImageDownloader

func (*ItolImageDownloader) Download

func (d *ItolImageDownloader) Download(id string, format int) ([]byte, error)

Down a tree image from ITOL

type NcbiTreeDownloader

type NcbiTreeDownloader struct {
	// contains filtered or unexported fields
}

func NewNcbiTreeDownloader

func NewNcbiTreeDownloader() *NcbiTreeDownloader

NCBI taxonomy downloader

func (*NcbiTreeDownloader) Download

func (d *NcbiTreeDownloader) Download(id string) (*tree.Tree, error)

Download the NCBI taxonomy as a tree.Tree

func (*NcbiTreeDownloader) SetInternalNodesTaxId

func (d *NcbiTreeDownloader) SetInternalNodesTaxId(val bool)

If taxids only must be printed as internal nodes of the output tree Otherwise taxa names

func (*NcbiTreeDownloader) SetMapFileOutputPath

func (d *NcbiTreeDownloader) SetMapFileOutputPath(output string)

If called, the downloader will also write mapping between ncbi taxid and tax name in the given output file

func (*NcbiTreeDownloader) SetTipsTaxId

func (d *NcbiTreeDownloader) SetTipsTaxId(val bool)

If taxids only must be printed as tips of the output tree Otherwise taxa names

type TreeDownloader

type TreeDownloader interface {
	Download(id string) (*tree.Tree, error) // Download a tree from a server
}